Xanthomonas theicola strain CFBP 4691 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
The complete genome sequence of Xanthomonas theicola causing bacterial canker on tea plants provides insight into the biology of clade-1 xanthomonads
Submitted (14-FEB-2020) Plant Pathology, The Ohio State University, 201 Kottman Hall, 2021 Coffey Rd, Columbus, OH 43210, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP049018.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 05-FEB-2019\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 264.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 04:39:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,558\nCDSs (total) :: 4,497\nGenes (coding) :: 3,897\nCDSs (with protein) :: 3,897\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 5\nPseudo Genes (total) :: 600\nCDSs (without protein) :: 600\nPseudo Genes (ambiguous residues) :: 0 of 600\nPseudo Genes (frameshifted) :: 262 of 600\nPseudo Genes (incomplete) :: 416 of 600\nPseudo Genes (internal stop) :: 165 of 600\nPseudo Genes (multiple problems) :: 211 of 600\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_007583955.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611954.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005413373.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017158590.1
COORDINATES: similar to AA sequence:RefSeq:WP_015472934.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
XopAF/AvrXv3 family type III secretion system effector
COORDINATES: protein motif:HMM:NF024408.2
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011347479.1
XopE/AvrPphe family type III secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_017115638.1
COORDINATES: similar to AA sequence:RefSeq:WP_003491323.1
COORDINATES: similar to AA sequence:RefSeq:WP_007971545.1
COORDINATES: similar to AA sequence:RefSeq:WP_007968833.1
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF027824.2
COORDINATES: protein motif:HMM:NF022453.2
COORDINATES: protein motif:HMM:NF021981.2
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019238172.1
COORDINATES: similar to AA sequence:RefSeq:WP_017162875.1
IncP-type conjugal transfer protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_005995704.1
COORDINATES: similar to AA sequence:RefSeq:WP_003298110.1
COORDINATES: similar to AA sequence:RefSeq:WP_003039677.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_003490078.1
COORDINATES: protein motif:HMM:TIGR02780.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbJ
COORDINATES: protein motif:HMM:TIGR02783.1
P-type conjugative transfer protein TrbL
COORDINATES: protein motif:HMM:NF010446.0
COORDINATES: protein motif:HMM:NF015487.2
P-type conjugative transfer protein TrbG
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF021549.2
COORDINATES: similar to AA sequence:RefSeq:WP_003490066.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]