Xanthomonas cucurbitae strain ATCC 23378 plasmid unnamed, complete sequence.
type: Entry
definition: Xanthomonas cucurbitae strain ATCC 23378 plasmid unnamed, complete sequence.
sequence version: NZ_CP033327.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP033327.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10290145
keyword: RefSeq
source: Xanthomonas cucurbitae
organism: Xanthomonas cucurbitae
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
reference: 1
references: 33734871
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP033327.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 06-JUN-2018\nAssembly Method :: SPAdes v. June-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 32.0x\nSequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:25:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,022\nCDSs (total) :: 3,951\nGenes (coding) :: 3,719\nCDSs (with protein) :: 3,719\nGenes (RNA) :: 71\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 10\nPseudo Genes (total) :: 232\nCDSs (without protein) :: 232\nPseudo Genes (ambiguous residues) :: 0 of 232\nPseudo Genes (frameshifted) :: 110 of 232\nPseudo Genes (incomplete) :: 139 of 232\nPseudo Genes (internal stop) :: 27 of 232\nPseudo Genes (multiple problems) :: 40 of 232\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14239
topology: circular
so has quality: SO_0000988
location: 1..14239
location: region:1-14239:1
RO_0002162: 56453

NZ_CP033327
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10290145
type: BioSample
SIO_000068: biosample

1
title: Genome Sequencing and Functional Characterization of Xanthomonas cucurbitae, the Causal Agent of Bacterial Spot Disease of Cucurbits
author: Rai, R.
author: Pasion, J.
author: Majumdar, T.
author: Green, C.E.
author: Hind, S.R.
journal: Phytopathology
volume: 111
issue: 8
pages: 1289-1300
year: 2021
pubmed: 33734871

33734871
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hind, S.R.
journal: Submitted (25-OCT-2018) Crop Sciences, University of Illinois, Urbana-Champaign, 259 ERML, 1201 W Gregory, Urbana, IL 61801, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14239:1
position: 14239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14239:1:source
so part of: sequence
organism: Xanthomonas cucurbitae
mol type: genomic DNA
strain: ATCC 23378
host: Cucurbita maxima
culture collection: ATCC:23378
plasmid: unnamed
country: USA: New York
collection date: 1926
collected by: MP Starr
identified by: Bryan

56453
type: Taxonomy
SIO_000068: taxonomy

EBN15_RS19960
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
gene: trbL
locus tag: EBN15_RS19960
old locus tag: EBN15_20020
so part of: sequence
location: complement(join(14086..14239,1..1241))
location: region:1-14239:-1
so has part: feature:1-1241:-1:exon
so has part: feature:14086-14239:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14239:-1
position: 14239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1241:-1:exon

position:1241:-1
position: 1241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14086-14239:-1:exon

position:14086:-1
position: 14086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EBN15_RS19960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
gene: trbL
locus tag: EBN15_RS19960
old locus tag: EBN15_20020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002097827.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbL
translation: MKKLLLGGLAAVFIAMLSEPAMAQQLNSSGVMNDVLQRFHNAASTWGPAIEAAASRLFWALVVISMVWTFGMMALRKADIGEFFAEFVRFTIFTGFFWWLLTNATTGMNIAGTIVQSMQQLGAQAGGLGDSRLGPSAIVDIGFELYDRTVEATSELGWRRMGTAIVMELMALGVLLVLALIAVNLLLLLASSWVLLYAGIFFLGFGGSRWTSDIAINYYKTVLGIAAQILAMVLIVAIGKQFLTHYYSQISGNMAAQELAVMLVVAVCLLFLVNRIPPLISGIVSGGGIGAAGGIGNFGASSIAAAGGAAIGAAAAVGSAVATGGAALAAGAASIGGGASAIKAAFEKAQGYAANDAGSMPMFGGGSDSGSDAGSFAQAAGFGGGSGSGAGTTTPLAQAAGFGSSSGSGASGSGCRLVCTSCWLWWRFRLRCGHHYTTCTGRRLRQQLGQRCQRFGWSQWAAVR
SIO_010081: EBN15_RS19960
subclass of: SO_0000673
so part of: EBN15_RS19960
location: complement(join(14086..14239,1..1241))
location: region:1-14239:-1
so has part: feature:1-1241:-1:exon
so has part: feature:14086-14239:-1:exon

WP_208800747.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1241:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14086-14239:-1:exon

EBN15_RS19965
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
gene: trbK
locus tag: EBN15_RS19965
old locus tag: EBN15_20025
so part of: sequence
location: complement(1253..1486)
location: region:1253-1486:-1
so has part: feature:1253-1486:-1:exon
subclass of: SO_0000010

position:1253:-1
position: 1253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1486:-1
position: 1486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1253-1486:-1:exon

EBN15_RS19965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
gene: trbK
locus tag: EBN15_RS19965
old locus tag: EBN15_20025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011785202.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO process: GO:0009292 - horizontal gene transfer [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: entry exclusion lipoprotein TrbK
translation: MKKIMLLAVVAAGLAGCGDDAMPEPNAATCKPPTYQQALSEIKSEAKRAAFIEECKAFQKAQDMRKWEFKPSPADNF
SIO_010081: EBN15_RS19965
subclass of: SO_0000673
so part of: EBN15_RS19965
location: complement(1253..1486)
location: region:1253-1486:-1
so has part: feature:1253-1486:-1:exon

WP_208800749.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1253-1486:-1:exon

EBN15_RS19970
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
gene: trbJ
locus tag: EBN15_RS19970
old locus tag: EBN15_20030
so part of: sequence
location: complement(1499..2269)
location: region:1499-2269:-1
so has part: feature:1499-2269:-1:exon
subclass of: SO_0000010

position:1499:-1
position: 1499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2269:-1
position: 2269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1499-2269:-1:exon

EBN15_RS19970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
gene: trbJ
locus tag: EBN15_RS19970
old locus tag: EBN15_20030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000836966.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbJ
translation: MKHVRLLAAKTALAAALAGSIIITPAQAGIPVIDGGNLVQNVMTAIESVAQTLKQIEQYQTQLQQYENMIQNTVAPAAYIWDQAQSTINGLMNAVDTLNYYKTQLGSLDAYLGKFQDVAYYRSSPCFNGSGGCTPAEKAAMEENRRLASESQKRANDALFKGLEQQQRNLTADARQLERLQSAAQGANGQMQAIGYANQLAANQANQLLQIRGLLIAQQNALAAREAAEIDSDARSEARAKQLRTWNYRASPADNF
SIO_010081: EBN15_RS19970
subclass of: SO_0000673
so part of: EBN15_RS19970
location: complement(1499..2269)
location: region:1499-2269:-1
so has part: feature:1499-2269:-1:exon

WP_159408046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1499-2269:-1:exon

EBN15_RS19975
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS19975
old locus tag: EBN15_20035
pseudo: true
so part of: sequence
location: complement(2509..4328)
location: region:2509-4328:-1
so has part: feature:2509-4328:-1:exon
subclass of: SO_0000010

position:2509:-1
position: 2509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4328:-1
position: 4328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2509-4328:-1:exon

EBN15_RS19975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS19975
old locus tag: EBN15_20035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017997822.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: EBN15_RS19975
subclass of: SO_0000673
so part of: EBN15_RS19975
location: complement(2509..4328)
location: region:2509-4328:-1
so has part: feature:2509-4328:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2509-4328:-1:exon

EBN15_RS19980
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
gene: traJ
locus tag: EBN15_RS19980
old locus tag: EBN15_20040
so part of: sequence
location: complement(4325..4702)
location: region:4325-4702:-1
so has part: feature:4325-4702:-1:exon
subclass of: SO_0000010

position:4325:-1
position: 4325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4702:-1
position: 4702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4325-4702:-1:exon

EBN15_RS19980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
gene: traJ
locus tag: EBN15_RS19980
old locus tag: EBN15_20040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010676182.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer transcriptional regulator TraJ
translation: MEANENKVTRKGSTPIKVYCLPDERAAIEANAQAAGMSTSAYLLAVGQGYQVKGVTDFENVRDLVRVNGDLGRLGGLLKLWLTDDPRTARFGDDTIRALLARIEATQDKISTIAESVVRPRGGQS
SIO_010081: EBN15_RS19980
subclass of: SO_0000673
so part of: EBN15_RS19980
location: complement(4325..4702)
location: region:4325-4702:-1
so has part: feature:4325-4702:-1:exon

WP_054471493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4325-4702:-1:exon

EBN15_RS19985
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS19985
so part of: sequence
location: 5045..5473
location: region:5045-5473:1
so has part: feature:5045-5473:1:exon
subclass of: SO_0000010

position:5045:1
position: 5045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5473:1
position: 5473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5045-5473:1:exon

EBN15_RS19985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS19985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011205820.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraK family protein
translation: MMLMGTRYTDELAAWASTKAEAKRRQDTAAVAFLAVKTDVIEAMDAGYALTTIYDHMHETGRVKTSYETFRRHVQRFIKAAPAATTPPTPKATIRSASSSQATVPAVTRKPAAPVPANPAGEQLGKIPSLNFNPTPNKEDLL
SIO_010081: EBN15_RS19985
subclass of: SO_0000673
so part of: EBN15_RS19985
location: 5045..5473
location: region:5045-5473:1
so has part: feature:5045-5473:1:exon

WP_223214485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5045-5473:1:exon

EBN15_RS19990
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS19990
old locus tag: EBN15_20050
so part of: sequence
location: complement(5680..6621)
location: region:5680-6621:-1
so has part: feature:5680-6621:-1:exon
subclass of: SO_0000010

position:5680:-1
position: 5680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6621:-1
position: 6621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5680-6621:-1:exon

EBN15_RS19990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS19990
old locus tag: EBN15_20050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020750540.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MTQQAPQIPADVRERIIAAATDLFEQSGRQTMPTVDAVRRAARVDMNAASAVMKEWRRAQTAQAAPVAVAVPEAVQQASNAAVATIWQQAQELANESLRSAQAAWETERAELDAMRQELAEAFERQAGELDAATAALAAEKAGAEKLAQELAAVRQELDDTTSRAEKAEARNAEIERRADELRTELDRAHKDADQARGALAEQQKAGQAVAAQLDQVREELATVRAKADAEREAHQEQRKAAAAEAQRVAERLTAAQAERDQAMKATALAREEAARMAGQLDTLKEQSAALLARITPPAAEAKPATRKKPGGE
SIO_010081: EBN15_RS19990
subclass of: SO_0000673
so part of: EBN15_RS19990
location: complement(5680..6621)
location: region:5680-6621:-1
so has part: feature:5680-6621:-1:exon

WP_159408056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5680-6621:-1:exon

EBN15_RS19995
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS19995
old locus tag: EBN15_20055
so part of: sequence
location: complement(6906..7214)
location: region:6906-7214:-1
so has part: feature:6906-7214:-1:exon
subclass of: SO_0000010

position:6906:-1
position: 6906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7214:-1
position: 7214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6906-7214:-1:exon

EBN15_RS19995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS19995
old locus tag: EBN15_20055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020750541.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRARRAFPPELLAQLQGMPVTAALDLLGLYWKHDPDFKPIKDKATVRVNVALGGGGVELLATGPKWYDTRAERGGGGAIDLAMHLLRLDFVAAVKRLQAAA
SIO_010081: EBN15_RS19995
subclass of: SO_0000673
so part of: EBN15_RS19995
location: complement(6906..7214)
location: region:6906-7214:-1
so has part: feature:6906-7214:-1:exon

WP_159408047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6906-7214:-1:exon

EBN15_RS20000
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20000
old locus tag: EBN15_20060
so part of: sequence
location: complement(7432..8907)
location: region:7432-8907:-1
so has part: feature:7432-8907:-1:exon
subclass of: SO_0000010

position:7432:-1
position: 7432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8907:-1
position: 8907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7432-8907:-1:exon

EBN15_RS20000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20000
old locus tag: EBN15_20060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017158332.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein
translation: MAGQAQLALFEPADEAGTYHDTTRTGFFSLLVAVGKDKRQDSYRLTDMPTILGMVDQTRDTWLTQAEFMRPNRRVVNLARIGLLFADLDTYRQPWAAGRTPEQLAAAVLYHCAQEGIPTPSLLVYSGRGIQAKWLLDGTLPRQALPRWNACQRYLVDRLAGLGADPQAKDASRVLRLVSTVNTKSGDVCRVVHVEHGQDGQPVRYGFEYLAEMLLPVARWTIEQQRQERIERRQLKLLPGGKSDNLRGFSGRQLAWDRLEDLRKLAELRGGVREGERMQHLFWRLNFLLLSGATHSGQMYHEAAALAGELDPAWSYRSKELMTLYAKAKAHEAGEKVEFGGKQLSPLYTPKNDTLISLFQISDEEQCKLRTLISSDMAKERDRERHTARRRAAGAVDRGTYLDAAEAKRAQAQALKAEGLSVRAIAQRMGISKSLAAMYAKEAAACPKSVRITADQAAPVANIAGNDDGGREGVQSPSVLLMAKPTGRGVV
SIO_010081: EBN15_RS20000
subclass of: SO_0000673
so part of: EBN15_RS20000
location: complement(7432..8907)
location: region:7432-8907:-1
so has part: feature:7432-8907:-1:exon

WP_159408048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7432-8907:-1:exon

EBN15_RS20005
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
gene: parC
locus tag: EBN15_RS20005
old locus tag: EBN15_20065
so part of: sequence
location: complement(9124..9438)
location: region:9124-9438:-1
so has part: feature:9124-9438:-1:exon
subclass of: SO_0000010

position:9124:-1
position: 9124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9438:-1
position: 9438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9124-9438:-1:exon

EBN15_RS20005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
gene: parC
locus tag: EBN15_RS20005
old locus tag: EBN15_20065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015042064.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParC family partition-associated protein
translation: MITFDSKAVINPTAFKEVVLVGGVQGATVTVAEKGLVLALRIGGENRILGQYRGGPRYFRTIDAAASLLIQHGIYRFEADVAGWKPKTLTRKGGELLGGTSIEP
SIO_010081: EBN15_RS20005
subclass of: SO_0000673
so part of: EBN15_RS20005
location: complement(9124..9438)
location: region:9124-9438:-1
so has part: feature:9124-9438:-1:exon

WP_159408049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9124-9438:-1:exon

EBN15_RS20010
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20010
old locus tag: EBN15_20070
so part of: sequence
location: complement(9522..9851)
location: region:9522-9851:-1
so has part: feature:9522-9851:-1:exon
subclass of: SO_0000010

position:9522:-1
position: 9522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9851:-1
position: 9851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9522-9851:-1:exon

EBN15_RS20010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20010
old locus tag: EBN15_20070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007966095.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADVSKLKKLKGRRDELGAPPTLDEASTNLTAPEVAPVARPAAANPPPQAPAAKKIDGRSARKTNRTVQFATRVTPEWDARIRALAQREGVLLVEILEKALDHYEQSSS
SIO_010081: EBN15_RS20010
subclass of: SO_0000673
so part of: EBN15_RS20010
location: complement(9522..9851)
location: region:9522-9851:-1
so has part: feature:9522-9851:-1:exon

WP_011997475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9522-9851:-1:exon

EBN15_RS20015
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20015
old locus tag: EBN15_20075
so part of: sequence
location: complement(9844..10476)
location: region:9844-10476:-1
so has part: feature:9844-10476:-1:exon
subclass of: SO_0000010

position:9844:-1
position: 9844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10476:-1
position: 10476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9844-10476:-1:exon

EBN15_RS20015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20015
old locus tag: EBN15_20075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011382086.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MAAIVAFVSQKGGVGKSTLARALAREAAAGGLRVKVADLDTQQGTAVDWHRLRLSQGIEPVVSVEAFATAAQALEAAKGYDLLIIDGPARTSSATLDIARAADLIVQPSGASRDDLIPAVREFHALTKAGVPNDRLAFALNRIGTPAEEVAARVYLQQAGYTVLDGSLRDRPAYRQAQNTGHSITETRFAGLNERADTLIQSLIDRVTNG
SIO_010081: EBN15_RS20015
subclass of: SO_0000673
so part of: EBN15_RS20015
location: complement(9844..10476)
location: region:9844-10476:-1
so has part: feature:9844-10476:-1:exon

WP_007966093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9844-10476:-1:exon

EBN15_RS20020
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20020
old locus tag: EBN15_20080
pseudo: true
so part of: sequence
location: complement(<10759..11466)
location: region:10759-11466:-1
so has part: feature:10759-11466:-1:exon
subclass of: SO_0000010

position:10759:-1
position: 10759
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:11466:-1
position: 11466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10759-11466:-1:exon

EBN15_RS20020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20020
old locus tag: EBN15_20080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001370723.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: EBN15_RS20020
subclass of: SO_0000673
so part of: EBN15_RS20020
location: complement(<10759..11466)
location: region:10759-11466:-1
so has part: feature:10759-11466:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10759-11466:-1:exon

EBN15_RS20025
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20025
old locus tag: EBN15_20085
so part of: sequence
location: 11663..11935
location: region:11663-11935:1
so has part: feature:11663-11935:1:exon
subclass of: SO_0000010

position:11663:1
position: 11663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11935:1
position: 11935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11663-11935:1:exon

EBN15_RS20025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20025
old locus tag: EBN15_20085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019564015.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family ribbon-helix-helix protein
translation: MATSLKIDDTLKGRVHHLASQRRRSPHWIMLEAIQQYVEREEARESFKQEALASWAAYKETGRHLTGQEVRTWLNTWGTSDERAVPECHK
SIO_010081: EBN15_RS20025
subclass of: SO_0000673
so part of: EBN15_RS20025
location: 11663..11935
location: region:11663-11935:1
so has part: feature:11663-11935:1:exon

WP_005933935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11663-11935:1:exon

EBN15_RS20030
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20030
old locus tag: EBN15_20090
so part of: sequence
location: 11923..12216
location: region:11923-12216:1
so has part: feature:11923-12216:1:exon
subclass of: SO_0000010

position:11923:1
position: 11923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12216:1
position: 12216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11923-12216:1:exon

EBN15_RS20030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20030
old locus tag: EBN15_20090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018990404.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPQVIVTEGAAEGLERCRRFLAVKAPDAARRAGQAIERQFLLLETAPDIGRPFPEMPELRELVIAFGDSGYVALYRHEPADDAVYVLAFRHQKEAGY
SIO_010081: EBN15_RS20030
subclass of: SO_0000673
so part of: EBN15_RS20030
location: 11923..12216
location: region:11923-12216:1
so has part: feature:11923-12216:1:exon

WP_054471487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11923-12216:1:exon

EBN15_RS20035
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20035
old locus tag: EBN15_20095
so part of: sequence
location: 12216..12581
location: region:12216-12581:1
so has part: feature:12216-12581:1:exon
subclass of: SO_0000010

position:12581:1
position: 12581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12216-12581:1:exon

EBN15_RS20035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20035
old locus tag: EBN15_20095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010378959.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MGRKETEEAIADSRAGHVTRVGSVAELLAELNADDTPDVQQGSTNVYADLGFPDADEMLVKAQLVTKIGEAIKARKLSSDHAAAALGLMSAELGELLAGHFRAHSVDDLARLAALLDEAGR
SIO_010081: EBN15_RS20035
subclass of: SO_0000673
so part of: EBN15_RS20035
location: 12216..12581
location: region:12216-12581:1
so has part: feature:12216-12581:1:exon

WP_159408051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12216-12581:1:exon

EBN15_RS20040
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20040
old locus tag: EBN15_20100
so part of: sequence
location: 12578..12925
location: region:12578-12925:1
so has part: feature:12578-12925:1:exon
subclass of: SO_0000010

position:12578:1
position: 12578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12925:1
position: 12925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12578-12925:1:exon

EBN15_RS20040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20040
old locus tag: EBN15_20100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010378961.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional regulator
translation: MTDPKNLETWLHEKAGPAHDELKADPARAVSAGRVRYTLDELLAEAEAAGQHPLPPEQREWVDAPAVGRELLPEDLQTAEAIAGFLADAEATGDADYIEHAHQVAARARAMHGIG
SIO_010081: EBN15_RS20040
subclass of: SO_0000673
so part of: EBN15_RS20040
location: 12578..12925
location: region:12578-12925:1
so has part: feature:12578-12925:1:exon

WP_159408052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12578-12925:1:exon

EBN15_RS20045
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20045
old locus tag: EBN15_20110
so part of: sequence
location: complement(13144..13377)
location: region:13144-13377:-1
so has part: feature:13144-13377:-1:exon
subclass of: SO_0000010

position:13144:-1
position: 13144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13377:-1
position: 13377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13144-13377:-1:exon

EBN15_RS20045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20045
old locus tag: EBN15_20110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010373138.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I toxin-antitoxin system ptaRNA1 family toxin
translation: MATLNPTNAIATQAVHHAAAQLAALDWIDQDAARQLSPMAEAVANMFMVLYYQAETGQATRDDFRQALDAVRQSLAA
SIO_010081: EBN15_RS20045
subclass of: SO_0000673
so part of: EBN15_RS20045
location: complement(13144..13377)
location: region:13144-13377:-1
so has part: feature:13144-13377:-1:exon

WP_159408053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13144-13377:-1:exon

EBN15_RS20050
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20050
old locus tag: EBN15_20115
so part of: sequence
location: complement(13438..13701)
location: region:13438-13701:-1
so has part: feature:13438-13701:-1:exon
subclass of: SO_0000010

position:13438:-1
position: 13438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13701:-1
position: 13701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13438-13701:-1:exon

EBN15_RS20050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20050
old locus tag: EBN15_20115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017997818.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRSGFFDCLALDQVQRPAVEFEPPGDQSTELDAAAEVAAFVDRPAPSAIEVTRPAARSSSNSHSGSNRNTPLAEAAGFYSSGQRRQ
SIO_010081: EBN15_RS20050
subclass of: SO_0000673
so part of: EBN15_RS20050
location: complement(13438..13701)
location: region:13438-13701:-1
so has part: feature:13438-13701:-1:exon

WP_159408054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13438-13701:-1:exon

EBN15_RS20155
type: Gene
subclass of: SO_0000704
RO_0002162: 56453
locus tag: EBN15_RS20155
so part of: sequence
location: complement(13704..13958)
location: region:13704-13958:-1
so has part: feature:13704-13958:-1:exon
subclass of: SO_0000010

position:13704:-1
position: 13704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13958:-1
position: 13958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13704-13958:-1:exon

EBN15_RS20155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56453
locus tag: EBN15_RS20155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAQGIGDVAKAKAASIRDAAVERMADTTGGKIAAAIRASSQNDQAAEGMPTFGGDSLAGADSAASDPESEVAAFANRDHGKSEA
SIO_010081: EBN15_RS20155
subclass of: SO_0000673
so part of: EBN15_RS20155
location: complement(13704..13958)
location: region:13704-13958:-1
so has part: feature:13704-13958:-1:exon

WP_167527030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13704-13958:-1:exon