Xanthomonas cucurbitae strain ATCC 23378 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Genome Sequencing and Functional Characterization of Xanthomonas cucurbitae, the Causal Agent of Bacterial Spot Disease of Cucurbits
Submitted (25-OCT-2018) Crop Sciences, University of Illinois, Urbana-Champaign, 259 ERML, 1201 W Gregory, Urbana, IL 61801, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP033327.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 06-JUN-2018\nAssembly Method :: SPAdes v. June-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 32.0x\nSequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:25:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,022\nCDSs (total) :: 3,951\nGenes (coding) :: 3,719\nCDSs (with protein) :: 3,719\nGenes (RNA) :: 71\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 10\nPseudo Genes (total) :: 232\nCDSs (without protein) :: 232\nPseudo Genes (ambiguous residues) :: 0 of 232\nPseudo Genes (frameshifted) :: 110 of 232\nPseudo Genes (incomplete) :: 139 of 232\nPseudo Genes (internal stop) :: 27 of 232\nPseudo Genes (multiple problems) :: 40 of 232\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002097827.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_011785202.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000836966.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_017997822.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010676182.1
conjugal transfer transcriptional regulator TraJ
COORDINATES: similar to AA sequence:RefSeq:WP_011205820.1
COORDINATES: similar to AA sequence:RefSeq:WP_020750540.1
COORDINATES: similar to AA sequence:RefSeq:WP_020750541.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158332.1
COORDINATES: similar to AA sequence:RefSeq:WP_015042064.1
ParC family partition-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_007966095.1
COORDINATES: similar to AA sequence:RefSeq:WP_011382086.1
COORDINATES: similar to AA sequence:RefSeq:WP_001370723.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019564015.1
COORDINATES: similar to AA sequence:RefSeq:WP_018990404.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010378959.1
COORDINATES: similar to AA sequence:RefSeq:WP_010378961.1
COORDINATES: similar to AA sequence:RefSeq:WP_010373138.1
type I toxin-antitoxin system ptaRNA1 family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017997818.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.