Roseicitreum antarcticum strain ZS2-28 plasmid pRA01, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseicitreum.
Complete genome sequence of Roseicitreum antarcticum ZS2-28T
Submitted (15-SEP-2020) Bioscience, Polar Research Institute of China, 451 Jinqiao Road, Shanghai 200136, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP061502.1.\nBacteria and source DNA available from China General\nMicrobiological Culture Collection Center.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 14-SEP-2020\nAssembly Method :: Canu v. 1.3; Pilon v. 1.23\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 722.0x\nSequencing Technology :: Illumina HiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/14/2022 04:46:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,127\nCDSs (total) :: 4,073\nGenes (coding) :: 3,924\nCDSs (with protein) :: 3,924\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 149\nCDSs (without protein) :: 149\nPseudo Genes (ambiguous residues) :: 0 of 149\nPseudo Genes (frameshifted) :: 65 of 149\nPseudo Genes (incomplete) :: 97 of 149\nPseudo Genes (internal stop) :: 19 of 149\nPseudo Genes (multiple problems) :: 28 of 149\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Antarctica: Larsemann Hills, Princess Elizabeth Land
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004686760.1
GO:0004040 - amidase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
glucosaminidase domain-containing protein
COORDINATES: protein motif:HMM:NF025253.2
COORDINATES: similar to AA sequence:RefSeq:WP_012479897.1
GO:0019028 - viral capsid [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007815693.1
COORDINATES: similar to AA sequence:RefSeq:WP_007815694.1
COORDINATES: protein motif:HMM:TIGR01445.1
COORDINATES: protein motif:HMM:NF015550.2
COORDINATES: protein motif:HMM:NF018785.2
COORDINATES: similar to AA sequence:RefSeq:WP_008143072.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501417.1
COORDINATES: similar to AA sequence:RefSeq:WP_011003134.1
COORDINATES: protein motif:HMM:TIGR00616.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015776.2
COORDINATES: protein motif:HMM:NF021574.2
COORDINATES: similar to AA sequence:RefSeq:WP_005980850.1
GO:0008168 - methyltransferase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015967374.1
COORDINATES: protein motif:HMM:NF025712.2
Lar family restriction alleviation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011581237.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_011389655.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012974675.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248383.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488631.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564887.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750587.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012187441.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187442.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF003962.0
glucans biosynthesis glucosyltransferase MdoH
COORDINATES: similar to AA sequence:RefSeq:WP_007818213.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:NF013250.2
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007818217.1
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008196010.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014880317.1
COORDINATES: similar to AA sequence:RefSeq:WP_007426532.1
COORDINATES: similar to AA sequence:RefSeq:WP_008560090.1
COORDINATES: similar to AA sequence:RefSeq:WP_009806307.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF019205.2
COORDINATES: similar to AA sequence:RefSeq:WP_009117755.1
COORDINATES: similar to AA sequence:RefSeq:WP_011440359.1
PLD nuclease N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF039524.1
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_009573974.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257219.1
COORDINATES: similar to AA sequence:RefSeq:WP_004435992.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
GO:0019301 - rhamnose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015494913.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010140962.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017273897.1
GO:0031362 - anchored component of external side of plasma membrane [Evidence IEA]; GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033296 - rhamnose binding [Evidence IEA]; GO:0015153 - rhamnose transmembrane transporter activity [Evidence IEA]
GO:0015762 - rhamnose transmembrane transport [Evidence IEA]
rhamnose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006932484.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006932483.1
COORDINATES: similar to AA sequence:RefSeq:WP_007255953.1
COORDINATES: similar to AA sequence:RefSeq:WP_006932481.1
GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013962200.1
COORDINATES: similar to AA sequence:RefSeq:WP_009465673.1
COORDINATES: similar to AA sequence:RefSeq:WP_002720652.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497873.1
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007198688.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009566024.1
COORDINATES: similar to AA sequence:RefSeq:WP_002720648.1
COORDINATES: similar to AA sequence:RefSeq:WP_006937140.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634262.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_003517922.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_009808822.1
COORDINATES: similar to AA sequence:RefSeq:WP_019963609.1
COORDINATES: protein motif:HMM:NF024863.2
GDSL-type esterase/lipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006727084.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
DNA-binding transcriptional regulator KdgR
COORDINATES: similar to AA sequence:RefSeq:WP_010139998.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139996.1
COORDINATES: similar to AA sequence:RefSeq:WP_007758916.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139994.1
COORDINATES: similar to AA sequence:RefSeq:WP_019462996.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_006727090.1
COORDINATES: similar to AA sequence:RefSeq:WP_007421954.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_009827419.1
COORDINATES: similar to AA sequence:RefSeq:WP_018302738.1
COORDINATES: similar to AA sequence:RefSeq:WP_007427098.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_019954681.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006724855.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594143.1
COORDINATES: similar to AA sequence:RefSeq:WP_005980321.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010972906.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879807.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179415.1
COORDINATES: similar to AA sequence:RefSeq:WP_017928965.1
COORDINATES: similar to AA sequence:RefSeq:WP_008192124.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_009451162.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015781526.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009806035.1
COORDINATES: protein motif:HMM:NF037679.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008596429.1
COORDINATES: similar to AA sequence:RefSeq:WP_018426838.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF008277.0
COORDINATES: similar to AA sequence:RefSeq:WP_007257211.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257212.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749186.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_008598342.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_008556145.1
COORDINATES: similar to AA sequence:RefSeq:WP_012067486.1
COORDINATES: similar to AA sequence:RefSeq:WP_018209179.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879519.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571571.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571572.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139013.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179125.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012885564.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009571576.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139009.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178921.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571579.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178864.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571581.1
COORDINATES: similar to AA sequence:RefSeq:WP_007799847.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886187.1
COORDINATES: similar to AA sequence:RefSeq:WP_007799851.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803217.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003508230.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008032380.1
GO:0071518 - autoinducer-2 kinase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0009372 - quorum sensing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004210861.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339369.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: protein motif:HMM:NF024799.2
substrate-binding domain-containing protein
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF016885.2
COORDINATES: similar to AA sequence:RefSeq:WP_005723808.1
COORDINATES: similar to AA sequence:RefSeq:WP_015243229.1
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF024997.2
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_007794566.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571959.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
GO:0098869 - cellular oxidant detoxification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013500767.1
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_008032307.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824137.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804860.1
COORDINATES: similar to AA sequence:RefSeq:WP_018094145.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_013301696.1
COORDINATES: similar to AA sequence:RefSeq:WP_008280136.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818053.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019953956.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006006 - glucose metabolic process [Evidence IEA]
ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009803862.1
organoarsenical effux MFS transporter ArsJ
COORDINATES: similar to AA sequence:RefSeq:WP_009177772.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018404363.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020009122.1
COORDINATES: similar to AA sequence:RefSeq:WP_003511516.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480302.1
COORDINATES: similar to AA sequence:RefSeq:WP_014530826.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397936.1
COORDINATES: similar to AA sequence:RefSeq:WP_018062949.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975057.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019402673.1
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:NF018682.2
COORDINATES: similar to AA sequence:RefSeq:WP_003506045.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: protein motif:HMM:NF024966.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008283078.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911182.1
COORDINATES: similar to AA sequence:RefSeq:WP_008283080.1
Cys/Met metabolism pyridoxal-phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008283081.1
COORDINATES: similar to AA sequence:RefSeq:WP_019427552.1
glutathione S-transferase family protein
COORDINATES: protein motif:HMM:NF015445.2
COORDINATES: similar to AA sequence:RefSeq:WP_014131839.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: similar to AA sequence:RefSeq:WP_003273029.1
COORDINATES: similar to AA sequence:RefSeq:WP_013722777.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550122.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452803.1
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_009492491.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403071.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012904.2
COORDINATES: similar to AA sequence:RefSeq:WP_007178602.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:TIGR02431.1
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF019604.2
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF014757.2
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: similar to AA sequence:RefSeq:WP_009757985.1
COORDINATES: similar to AA sequence:RefSeq:WP_007576446.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: similar to AA sequence:RefSeq:WP_007576445.1
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: protein motif:HMM:NF039482.1
GO:0003951 - NAD+ kinase activity [Evidence IEA]
GO:0006741 - NADP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: protein motif:HMM:NF014073.2
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008123419.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_011537208.1
COORDINATES: similar to AA sequence:RefSeq:WP_012332784.1
COORDINATES: similar to AA sequence:RefSeq:WP_009210440.1
COORDINATES: similar to AA sequence:RefSeq:WP_009210439.1
COORDINATES: protein motif:HMM:NF040438.1
alpha/beta hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014750967.1
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007812659.1
COORDINATES: protein motif:HMM:NF012669.2
COORDINATES: similar to AA sequence:RefSeq:WP_010660800.1
autoinducer 2 ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011910293.1
COORDINATES: similar to AA sequence:RefSeq:WP_008122580.1
COORDINATES: similar to AA sequence:RefSeq:WP_015922940.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723196.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468300.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007255103.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008331266.1
COORDINATES: similar to AA sequence:RefSeq:WP_007256844.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884637.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884002.1
COORDINATES: similar to AA sequence:RefSeq:WP_018011652.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019998373.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400066.1
COORDINATES: similar to AA sequence:RefSeq:WP_007802887.1
COORDINATES: similar to AA sequence:RefSeq:WP_007802888.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001746.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030639.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008030640.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008885515.1
COORDINATES: similar to AA sequence:RefSeq:WP_019966628.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011453704.1
COORDINATES: protein motif:HMM:NF036542.2
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:NF013867.2
COORDINATES: similar to AA sequence:RefSeq:WP_013654882.1
COORDINATES: similar to AA sequence:RefSeq:WP_011582420.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043059.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006520 - cellular amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005612874.1
COORDINATES: similar to AA sequence:RefSeq:WP_016451135.1
COORDINATES: similar to AA sequence:RefSeq:WP_014283399.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404720.1
COORDINATES: similar to AA sequence:RefSeq:WP_009561276.1
zinc ribbon domain-containing protein YjdM
COORDINATES: similar to AA sequence:RefSeq:WP_008192281.1
COORDINATES: similar to AA sequence:RefSeq:WP_017499892.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175416.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748610.1
COORDINATES: similar to AA sequence:RefSeq:WP_005614889.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818129.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175686.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818132.1
COORDINATES: similar to AA sequence:RefSeq:WP_007799104.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237240.1
COORDINATES: similar to AA sequence:RefSeq:WP_019950667.1
COORDINATES: similar to AA sequence:RefSeq:WP_019950668.1
COORDINATES: similar to AA sequence:RefSeq:WP_000265913.1
COORDINATES: protein motif:HMM:NF009583.0
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019954475.1
COORDINATES: similar to AA sequence:RefSeq:WP_014323422.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007010757.1
COORDINATES: similar to AA sequence:RefSeq:WP_012271431.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012271432.1
dihydroorotate dehydrogenase electron transfer subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009756212.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887189.1
COORDINATES: similar to AA sequence:RefSeq:WP_015336952.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756215.1
COORDINATES: similar to AA sequence:RefSeq:WP_019859757.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533088.1
COORDINATES: similar to AA sequence:RefSeq:WP_006203884.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064636.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064637.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_018064638.1
COORDINATES: similar to AA sequence:RefSeq:WP_019859748.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006203879.1
COORDINATES: similar to AA sequence:RefSeq:WP_006203878.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018064642.1
COORDINATES: similar to AA sequence:RefSeq:WP_019645519.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018064647.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064648.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064649.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533091.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570082.1
COORDINATES: similar to AA sequence:RefSeq:WP_005611164.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570084.1
COORDINATES: similar to AA sequence:RefSeq:WP_005857577.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570086.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005857581.1
COORDINATES: similar to AA sequence:RefSeq:WP_005611152.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570089.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420340.1
COORDINATES: similar to AA sequence:RefSeq:WP_013652710.1
COORDINATES: similar to AA sequence:RefSeq:WP_020181336.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706461.1
COORDINATES: similar to AA sequence:RefSeq:WP_013107461.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_015499932.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015499931.1
COORDINATES: similar to AA sequence:RefSeq:WP_010392183.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496894.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120067.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015499927.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015499926.1
COORDINATES: similar to AA sequence:RefSeq:WP_009826813.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120071.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499923.1
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_018897630.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: protein motif:HMM:NF018513.2
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: protein motif:HMM:NF015905.2
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007618724.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
nickel pincer cofactor biosynthesis protein LarB
COORDINATES: similar to AA sequence:RefSeq:WP_017773574.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178324.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998913.1
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: similar to AA sequence:RefSeq:WP_013168274.1
COORDINATES: similar to AA sequence:RefSeq:WP_009340594.1
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: protein motif:HMM:NF013323.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:NF014841.2
GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014241926.1
COORDINATES: similar to AA sequence:RefSeq:WP_017628117.1
COORDINATES: protein motif:HMM:NF014754.2
COORDINATES: similar to AA sequence:RefSeq:WP_007813144.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331435.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018858767.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007803253.1
COORDINATES: similar to AA sequence:RefSeq:WP_006643175.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654751.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654752.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803247.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505369.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817689.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803242.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505372.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399402.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654758.1
D-Ala-D-Ala carboxypeptidase family metallohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_002723350.1
COORDINATES: protein motif:HMM:NF013661.2
peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF032893.0