Roseicitreum antarcticum strain ZS2-28 plasmid pRA03, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseicitreum.
Complete genome sequence of Roseicitreum antarcticum ZS2-28T
Submitted (15-SEP-2020) Bioscience, Polar Research Institute of China, 451 Jinqiao Road, Shanghai 200136, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP061501.1.\nBacteria and source DNA available from China General\nMicrobiological Culture Collection Center.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 14-SEP-2020\nAssembly Method :: Canu v. 1.3; Pilon v. 1.23\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 722.0x\nSequencing Technology :: Illumina HiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/14/2022 04:46:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,127\nCDSs (total) :: 4,073\nGenes (coding) :: 3,924\nCDSs (with protein) :: 3,924\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 149\nCDSs (without protein) :: 149\nPseudo Genes (ambiguous residues) :: 0 of 149\nPseudo Genes (frameshifted) :: 65 of 149\nPseudo Genes (incomplete) :: 97 of 149\nPseudo Genes (internal stop) :: 19 of 149\nPseudo Genes (multiple problems) :: 28 of 149\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Antarctica: Larsemann Hills, Princess Elizabeth Land
COORDINATES: similar to AA sequence:RefSeq:WP_019956876.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007812393.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005617048.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956874.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009807542.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120641.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956872.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807539.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009820261.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187077.1
type II toxin-antitoxin system PrlF family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007120648.1
type II toxin-antitoxin system YhaV family toxin
COORDINATES: protein motif:HMM:NF015642.2
COORDINATES: protein motif:HMM:NF037521.2
COORDINATES: similar to AA sequence:RefSeq:WP_008208328.1
transcriptional regulator/antitoxin MazE
COORDINATES: similar to AA sequence:RefSeq:WP_011911161.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009503768.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327427.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187348.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819680.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187346.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815530.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF025725.2
COORDINATES: similar to AA sequence:RefSeq:WP_009820257.1
COORDINATES: similar to AA sequence:RefSeq:WP_028713484.1
COORDINATES: similar to AA sequence:RefSeq:WP_019017612.1
COORDINATES: similar to AA sequence:RefSeq:WP_017927432.1
GO:0003824 - catalytic activity [Evidence IEA]
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019297917.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019956793.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282761.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008547586.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014327616.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_007427729.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120572.1
COORDINATES: similar to AA sequence:RefSeq:WP_007008337.1
COORDINATES: similar to AA sequence:RefSeq:WP_008546255.1
COORDINATES: similar to AA sequence:RefSeq:WP_012562013.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654758.1
D-Ala-D-Ala carboxypeptidase family metallohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_019956302.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998492.1
COORDINATES: similar to AA sequence:RefSeq:WP_018238875.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187142.1
COORDINATES: protein motif:HMM:NF012503.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_019956781.1
COORDINATES: similar to AA sequence:RefSeq:WP_003564850.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956188.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956681.1
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_019956191.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956192.1
COORDINATES: similar to AA sequence:RefSeq:WP_008031800.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956340.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008031805.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956674.1
COORDINATES: similar to AA sequence:RefSeq:WP_015923019.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030510.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019966414.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998463.1
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019956201.1
COORDINATES: similar to AA sequence:RefSeq:WP_008032455.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956718.1
COORDINATES: similar to AA sequence:RefSeq:WP_008031833.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956205.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956206.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956716.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956324.1
COORDINATES: similar to AA sequence:RefSeq:WP_008032461.1
phage terminase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008032462.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956321.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019956320.1
COORDINATES: similar to AA sequence:RefSeq:WP_008032465.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723262.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331448.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335662.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065894.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001793.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001792.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574206.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/Srx family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819701.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009819700.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120639.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611917.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008834620.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187123.1
COORDINATES: similar to AA sequence:RefSeq:WP_005864150.1
COORDINATES: similar to AA sequence:RefSeq:WP_008942971.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759231.1
COORDINATES: protein motif:HMM:NF012264.2
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: protein motif:HMM:NF024997.2
COORDINATES: similar to AA sequence:RefSeq:WP_005859586.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.