Roseicitreum antarcticum strain ZS2-28 plasmid pRA02, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseicitreum.
Complete genome sequence of Roseicitreum antarcticum ZS2-28T
Submitted (15-SEP-2020) Bioscience, Polar Research Institute of China, 451 Jinqiao Road, Shanghai 200136, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP061500.1.\nBacteria and source DNA available from China General\nMicrobiological Culture Collection Center.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 14-SEP-2020\nAssembly Method :: Canu v. 1.3; Pilon v. 1.23\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 722.0x\nSequencing Technology :: Illumina HiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/14/2022 04:46:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,127\nCDSs (total) :: 4,073\nGenes (coding) :: 3,924\nCDSs (with protein) :: 3,924\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 149\nCDSs (without protein) :: 149\nPseudo Genes (ambiguous residues) :: 0 of 149\nPseudo Genes (frameshifted) :: 65 of 149\nPseudo Genes (incomplete) :: 97 of 149\nPseudo Genes (internal stop) :: 19 of 149\nPseudo Genes (multiple problems) :: 28 of 149\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Antarctica: Larsemann Hills, Princess Elizabeth Land
COORDINATES: similar to AA sequence:RefSeq:WP_011625457.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
nucleoside triphosphate pyrophosphohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007645483.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611979.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020509.2
COORDINATES: similar to AA sequence:RefSeq:WP_015821555.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF036725.2
COORDINATES: similar to AA sequence:RefSeq:WP_015497490.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010398665.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827215.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574206.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009827217.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827218.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030564.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803223.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398645.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336115.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398642.1
COORDINATES: similar to AA sequence:RefSeq:WP_032490240.1
COORDINATES: similar to AA sequence:RefSeq:WP_011515356.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007204732.1
COORDINATES: similar to AA sequence:RefSeq:WP_007204734.1
COORDINATES: similar to AA sequence:RefSeq:WP_007204671.1
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009288189.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177110.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579103.1
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003289015.1
GO:0008804 - carbamate kinase activity [Evidence IEA]
GO:0006520 - cellular amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006198729.1
COORDINATES: similar to AA sequence:RefSeq:WP_008228719.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014579106.1
COORDINATES: similar to AA sequence:RefSeq:WP_015501586.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571224.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177117.1
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018063331.1
COORDINATES: similar to AA sequence:RefSeq:WP_018063332.1
COORDINATES: similar to AA sequence:RefSeq:WP_017324529.1
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007349155.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_019953277.1
COORDINATES: similar to AA sequence:RefSeq:WP_008883017.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008031653.1
COORDINATES: protein motif:HMM:NF017819.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612410.1
COORDINATES: similar to AA sequence:RefSeq:WP_013913361.1
COORDINATES: similar to AA sequence:RefSeq:WP_003859529.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011339464.1
COORDINATES: similar to AA sequence:RefSeq:WP_011505656.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859613.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065950.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820237.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005859619.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327373.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807508.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139197.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859624.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065943.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139194.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495973.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_008336084.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820228.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574168.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139189.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558647.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007815851.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_009827273.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654533.1
COORDINATES: similar to AA sequence:RefSeq:WP_009465943.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860470.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007253732.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859685.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803321.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008336066.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_007803318.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859691.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001755.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803314.1
COORDINATES: similar to AA sequence:RefSeq:WP_013167451.1
COORDINATES: similar to AA sequence:RefSeq:WP_007681434.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_011316274.1
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013167447.1
COORDINATES: similar to AA sequence:RefSeq:WP_006832740.1
COORDINATES: similar to AA sequence:RefSeq:WP_013167445.1
GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
HsdR family type I site-specific deoxyribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_013167444.1
SprT family zinc-dependent metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_009819877.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803302.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820104.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827197.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956934.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956935.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019956936.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956937.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001746.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956939.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956940.1
COORDINATES: similar to AA sequence:RefSeq:WP_007203965.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018324858.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019956944.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019956945.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400335.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450564.1
antitoxin of toxin-antitoxin stability system
COORDINATES: similar to AA sequence:RefSeq:WP_009820093.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030529.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065909.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803272.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138202.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065906.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859722.1
COORDINATES: similar to AA sequence:RefSeq:WP_012112830.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_008840746.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555815.1
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020041673.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_005859736.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612098.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007614727.1
COORDINATES: similar to AA sequence:RefSeq:WP_020182644.1