Roseicitreum antarcticum strain ZS2-28 plasmid pRA04, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseicitreum.
Complete genome sequence of Roseicitreum antarcticum ZS2-28T
Submitted (15-SEP-2020) Bioscience, Polar Research Institute of China, 451 Jinqiao Road, Shanghai 200136, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP061499.1.\nBacteria and source DNA available from China General\nMicrobiological Culture Collection Center.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 14-SEP-2020\nAssembly Method :: Canu v. 1.3; Pilon v. 1.23\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 722.0x\nSequencing Technology :: Illumina HiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/14/2022 04:46:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,127\nCDSs (total) :: 4,073\nGenes (coding) :: 3,924\nCDSs (with protein) :: 3,924\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 149\nCDSs (without protein) :: 149\nPseudo Genes (ambiguous residues) :: 0 of 149\nPseudo Genes (frameshifted) :: 65 of 149\nPseudo Genes (incomplete) :: 97 of 149\nPseudo Genes (internal stop) :: 19 of 149\nPseudo Genes (multiple problems) :: 28 of 149\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Antarctica: Larsemann Hills, Princess Elizabeth Land
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008759285.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009450564.1
antitoxin of toxin-antitoxin stability system
COORDINATES: similar to AA sequence:RefSeq:WP_009820093.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030529.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065909.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803272.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827206.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827208.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859736.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998436.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_010398665.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827215.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574206.1
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF015393.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03453.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503864.1
COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011982890.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_014332409.1
COORDINATES: similar to AA sequence:RefSeq:WP_015493510.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF024408.2
COORDINATES: protein motif:HMM:NF024406.2
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: protein motif:HMM:NF025442.2
COORDINATES: similar to AA sequence:RefSeq:WP_012187136.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187135.1
COORDINATES: similar to AA sequence:RefSeq:WP_011453575.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967842.1
COORDINATES: similar to AA sequence:RefSeq:WP_017268717.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007803314.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005002333.1
COORDINATES: similar to AA sequence:RefSeq:WP_020505848.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495296.1
COORDINATES: similar to AA sequence:RefSeq:WP_017772490.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004111592.1
putative DNA binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004111595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008928713.1
BREX-3 system P-loop-containing protein BrxF
COORDINATES: similar to AA sequence:RefSeq:WP_009816401.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065922.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803302.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820104.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820103.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1