Cylindrospermum stagnale PCC 7417 plasmid pCYLST.03, complete sequence.
type: Entry
definition: Cylindrospermum stagnale PCC 7417 plasmid pCYLST.03, complete sequence.
sequence version: NC_019758.1
sequence date: 2023-05-03
sequence: sequence
division: CON
label: NC_019758.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02261342
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Cylindrospermum stagnale PCC 7417
organism: Cylindrospermum stagnale PCC 7417
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Cylindrospermum.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP003645.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4091456\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\n Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Cylindrospermum stagnale PCC 7417\ncollection_date :: 1972\nlat_lon :: 59.332 18.064\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Sweden\nenvironment :: Missing\nnum_replicons :: 4\nref_biomaterial :: PCC 7417\nbiotic_relationship :: Free living\ntrophic_level :: Chemoheterotroph\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi05619\nFunding Program :: DOE-GEBA 2009\nGene Calling Method :: Prodigal, GenePRIMP\nIsolation Site :: Soil, greenhouse, Stockholm, Sweden, 1972\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/I…

sequence
subclass of: SO_0000155
sequence length: 20876
topology: circular
so has quality: SO_0000988
location: 1..20876
location: region:1-20876:1
RO_0002162: 56107

NC_019758
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02261342
type: BioSample
SIO_000068: biosample

1
title: Finished plasmid 3 of genome of Cylindrospermum stagnale PCC 7417
author: Gugger, M.
author: Coursin, T.
author: Rippka, R.
author: Tandeau De Marsac, N.
author: Huntemann, M.
author: Wei, C.-L.
author: Han, J.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Davenport, K.
author: Daligault, H.
author: Erkkila, T.
author: Gu, W.
author: Munk, A.C.C.
author: Teshima, H.
author: Xu, Y.
author: Chain, P.
author: Chen, A.
author: Krypides, N.
author: Mavromatis, K.
author: Markowitz, V.
author: Szeto, E.
author: Ivanova, N.
author: Mikhailova, N.
author: Ovchinnikova, G.
author: Pagani, I.
author: Pati, A.
author: Goodwin, L.
author: Peters, L.
author: Pitluck, S.
author: Woyke, T.
author: Kerfeld, C.
journal: Unpublished

2
title: Direct Submission
author: Gugger, M.
author: Coursin, T.
author: Rippka, R.
author: Tandeau De Marsac, N.
author: Huntemann, M.
author: Wei, C.-L.
author: Han, J.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Chen, A.
author: Kyrpides, N.
author: Mavromatis, K.
author: Markowitz, V.
author: Szeto, E.
author: Ivanova, N.
author: Pagani, I.
author: Pati, A.
author: Goodwin, L.
author: Nordberg, H.P.
author: Cantor, M.N.
author: Hua, S.X.
author: Woyke, T.
author: Kerfeld, C.A.
journal: Submitted (04-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20876:1
position: 20876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20876:1:source
so part of: sequence
organism: Cylindrospermum stagnale PCC 7417
mol type: genomic DNA
strain: PCC 7417
isolation source: Soil, greenhouse, Stockholm, Sweden, 1972
type material: type strain of Cylindrospermum stagnale
plasmid: pCYLST.03
country: Sweden
lat lon: 59.332 N 18.064 E
collection date: 1972

56107
type: Taxonomy
SIO_000068: taxonomy

CYLST_RS31970
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS31970
old locus tag: Cylst_6381
so part of: sequence
location: 46..2316
location: region:46-2316:1
so has part: feature:46-2316:1:exon
subclass of: SO_0000010

position:46:1
position: 46
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2316:1
position: 2316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46-2316:1:exon

CYLST_RS31970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS31970
old locus tag: Cylst_6381
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDFQTLKNRVILASFASTGLGVLLLFTPAKAVSNWVIAGSIGFLVAGNAIVDKAEKLHDKQAKKNNFQLQKLDTELANNHQLLSAKVQELASIKAELVISYTDNHQITQNALQLKATISKLQGELMTAKNQLSEAKDINSSTAVEILQDSFVEFKSQISALTTMLAKKYPDLSNDWALVEVEYQKQATELTNQIRVVSDQSESQELISMALAVQYEILYRGSMLKVKAYKSVVTHLAQQLIDVMPIDEHSAAIEELNQTWQAKTQAVKQEYHQYFEAIKAEFSEVADTVTTAYREDFNSIISEGMSQSEQIEALQLELHRLTRKLEELSKPHRFPGLTEQARVGNAIIDYYQRLGYCLDAIDWVSNETGYKLLFHHTRNGSRFISTDLLNDGDLPEKLKEVSASLNTPKFEQSERGGHVVLEVQTRHKRKSSSADDIARLWTPASQFEKTVKDWSRVRITGGSESGKSPTAENLAVCILKTRPGTAKLFNPQHDSVKNYWTIPVVGTSHNESEKGISTLAKLVDLRSTGKESREQFEVWIFDEIDSTMSHTHGKKSVIGGNVNFIIKQASHQNLGAIFIGQNANVSEYPGMDRSDWNNAVNVHIGANAYDAITNSNRFTSEEQAKLKATTDKLTEFCTGKNEELGLDKTNPNAYRFALVLEPNKKPYFVELPRFGCYTYDQITPVNTLVAGNDASNNASNSQSLEPLQSKDIAVAVAGDRGVMCAGCGSTNIKRNGKIAGKQKYQCKDCKTNWSE
SIO_010081: CYLST_RS31970
subclass of: SO_0000673
so part of: CYLST_RS31970
location: 46..2316
location: region:46-2316:1
so has part: feature:46-2316:1:exon

WP_015211432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46-2316:1:exon

CYLST_RS31975
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS31975
old locus tag: Cylst_6382
so part of: sequence
location: 2365..2628
location: region:2365-2628:1
so has part: feature:2365-2628:1:exon
subclass of: SO_0000010

position:2365:1
position: 2365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2628:1
position: 2628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2365-2628:1:exon

CYLST_RS31975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS31975
old locus tag: Cylst_6382
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDKLVVFFESLTPPAKIPLDYFFNKIVAFYECVPHTDLQDAYQYFYDGNITEALKYLESIGFEDVRILGDKQYSDMQGYMTLKREE
SIO_010081: CYLST_RS31975
subclass of: SO_0000673
so part of: CYLST_RS31975
location: 2365..2628
location: region:2365-2628:1
so has part: feature:2365-2628:1:exon

WP_015211433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2365-2628:1:exon

CYLST_RS31990
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS31990
old locus tag: Cylst_6385
so part of: sequence
location: 3793..4449
location: region:3793-4449:1
so has part: feature:3793-4449:1:exon
subclass of: SO_0000010

position:3793:1
position: 3793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4449:1
position: 4449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3793-4449:1:exon

CYLST_RS31990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS31990
old locus tag: Cylst_6385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015217882.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MKINRHGRAKVLTQQEIQLIFSHGLENDRDRMLFGVCLFSACRIRECVTLLTQDIYTNKGNVRPQFVLRKSNTKGKLATRSIPVIEDLRRLLADYYPTAGKIYLFPGRSNGHISHDSAARILRQACEQVGIIGVSTHSFRRTALTQMSNAGIPLRVIQEISGHRNLEQLQRYLEVTDEQVLGAAAALSMLSPVSEDVGKYAFNDIALKAPNVGIPADD
SIO_010081: CYLST_RS31990
subclass of: SO_0000673
so part of: CYLST_RS31990
location: 3793..4449
location: region:3793-4449:1
so has part: feature:3793-4449:1:exon

WP_015211436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3793-4449:1:exon

CYLST_RS31995
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS31995
old locus tag: Cylst_6386
so part of: sequence
location: 4442..4633
location: region:4442-4633:1
so has part: feature:4442-4633:1:exon
subclass of: SO_0000010

position:4442:1
position: 4442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4633:1
position: 4633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4442-4633:1:exon

CYLST_RS31995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS31995
old locus tag: Cylst_6386
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012599403.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MIRFKLAIADKLLLTIAEVHLLTGLSKELLRNAITAGELKAKVIGKSWRVKHSDLEEYVDKLF
SIO_010081: CYLST_RS31995
subclass of: SO_0000673
so part of: CYLST_RS31995
location: 4442..4633
location: region:4442-4633:1
so has part: feature:4442-4633:1:exon

WP_015211437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4442-4633:1:exon

CYLST_RS32000
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32000
old locus tag: Cylst_6387
so part of: sequence
location: 4699..5790
location: region:4699-5790:1
so has part: feature:4699-5790:1:exon
subclass of: SO_0000010

position:4699:1
position: 4699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5790:1
position: 5790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4699-5790:1:exon

CYLST_RS32000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32000
old locus tag: Cylst_6387
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAITVYSQRFQREIDIEQLLSLLGHDFGLIKTKNKILSKLEKDEICQDVLCPICRSKGDGGKIVLAPTLQQVHFKFDVHEYFCDDNKSQQKKGQKGRDVDFGKDRSNETKIIRELVTKGIEQKIISQQIISDMRKYFYEAKVKYQYKMDISIDALQWFYHLKCSKRKSLNISNIKLKFNPLHAQLPDFDWRLAAEIFFINENHNLIEMANDCYWEDPPKTFNKIQKIIKNTQDSLVFDVKELEIPYRNTIKLSDFIVYNLAIKNSQGWHLTNSNIVLAFAALLLYISNWDIESAILKLINIVKSPNVTDRNSGNVIGLNPFYDFEVWASISKIREVAKASKKGFDYNAQIKTIEEQLKNESKQ
SIO_010081: CYLST_RS32000
subclass of: SO_0000673
so part of: CYLST_RS32000
location: 4699..5790
location: region:4699-5790:1
so has part: feature:4699-5790:1:exon

WP_015211438.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4699-5790:1:exon

CYLST_RS32005
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32005
old locus tag: Cylst_6388
so part of: sequence
location: complement(5869..6399)
location: region:5869-6399:-1
so has part: feature:5869-6399:-1:exon
subclass of: SO_0000010

position:5869:-1
position: 5869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6399:-1
position: 6399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5869-6399:-1:exon

CYLST_RS32005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32005
old locus tag: Cylst_6388
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRSKVINLAVASVVCFSSLFVSSSVSGVGSRAIAQTVTPATAQNQCKNTKLLALYKKIDELITRIGLGITYPEFRAVFIDAKLIEKDLKELSKTDLCYGLQYDLTLSLEYLGIGKMYWERGMDGTDFLSVNNILIEFLLKQLPDMETLGNGKYIATDNAVKGYFNLGKLVFENIKM
SIO_010081: CYLST_RS32005
subclass of: SO_0000673
so part of: CYLST_RS32005
location: complement(5869..6399)
location: region:5869-6399:-1
so has part: feature:5869-6399:-1:exon

WP_015211439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5869-6399:-1:exon

CYLST_RS32010
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32010
old locus tag: Cylst_6389
so part of: sequence
location: 6651..8519
location: region:6651-8519:1
so has part: feature:6651-8519:1:exon
subclass of: SO_0000010

position:6651:1
position: 6651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8519:1
position: 8519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6651-8519:1:exon

CYLST_RS32010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32010
old locus tag: Cylst_6389
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017314234.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protelomerase family protein
translation: MSKAVQEKVNQLFEAVKDLTSYDEIRPYCEEFNEWLNTETNYSKASLGTVFSRTGFHKIFKSIPLLQGQNAELVPKRDREGNVKGHELKHYVLLLCGLDDSDWQERNKSEKVIGRLGNSQELNPDEYLELTGKLLESLDPHELAVGLIAATGRRPHEILARAKFTPIDGQSYQVMFEGQGKKRGDKPVFQIATLYPASYIIERLNHLRKSPTTRGLLTDIANEFPRDIAAQNRSIDSRRNGSLNRVVRQYFGDKGNNNPVLNFRHGEEQDNCKALRAAYLALATERDCEGSIGAKMLHAAKLAGHFTNENPNDGDLNHLVTTLGYADYVVTNTVNFPDAPTKDKLSKISVLESNLEEIREIQKQHNLPNQQSVISHLVESYLNRLDTAKELVEARKLITELQIENAKLNQDNSNMQAQITELQSENLQLQQKEIEMLSTESETQNSTVSLLEVQAMLLPLVQRIEALEAGQVSQTVKPVQAVKVEVKEDIDWQAVSNAELWNNADGKTNRAKGASEEKIRRCYEAICLYNNTVATGDNDRLAITNQALRTLSGVNGLAIGEWIKAHSEEIISHHSKYRMENPKDASKVETYYNKRHGAEKIADILGLINTELLEGEAMRINV
SIO_010081: CYLST_RS32010
subclass of: SO_0000673
so part of: CYLST_RS32010
location: 6651..8519
location: region:6651-8519:1
so has part: feature:6651-8519:1:exon

WP_015211440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6651-8519:1:exon

CYLST_RS32020
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32020
old locus tag: Cylst_6391
so part of: sequence
location: 8996..9550
location: region:8996-9550:1
so has part: feature:8996-9550:1:exon
subclass of: SO_0000010

position:8996:1
position: 8996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9550:1
position: 9550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8996-9550:1:exon

CYLST_RS32020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32020
old locus tag: Cylst_6391
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGEAKRRKKLDPSYGQLKAKILLDVQQMIYSSPLVQEMAINQLLEDENFWLQKTDILYEPVVASEEKRFYWTTSPTDSRKNKNRSYFIKHEKIVRDAISPLIGKFGAGWIIQLEQPEIDKTHFNYVPATQENLEKLAQDQFCGSMGQTIRFIIETAMFRWDWGKCVPVIATTVRDEDPVWIYIV
SIO_010081: CYLST_RS32020
subclass of: SO_0000673
so part of: CYLST_RS32020
location: 8996..9550
location: region:8996-9550:1
so has part: feature:8996-9550:1:exon

WP_015211442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8996-9550:1:exon

CYLST_RS32025
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
gene: gvpU
locus tag: CYLST_RS32025
old locus tag: Cylst_6392
so part of: sequence
location: complement(9771..10211)
location: region:9771-10211:-1
so has part: feature:9771-10211:-1:exon
subclass of: SO_0000010

position:9771:-1
position: 9771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10211:-1
position: 10211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9771-10211:-1:exon

CYLST_RS32025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
gene: gvpU
locus tag: CYLST_RS32025
old locus tag: Cylst_6392
inference: COORDINATES: protein motif:HMM:NF041667.1
GO component: GO:0031411 - gas vesicle [Evidence IEA]
GO process: GO:0031412 - gas vesicle organization [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: gas vesicle accessory protein GvpU
translation: MVYERMADNQDKNLPSNMEIDVVLKTIISLVNQTGMEIDITLYVKGIIFSGVAISAEKYFDSLAKEIETANGEPIVTQAFAEGFRKFRDNITLLYKEKEDNKPDPIHVHLRNAKFISGTIFNPDDIGIYWRGRLDQVDGFSLGKIQ
SIO_010081: CYLST_RS32025
subclass of: SO_0000673
so part of: CYLST_RS32025
location: complement(9771..10211)
location: region:9771-10211:-1
so has part: feature:9771-10211:-1:exon

WP_015211443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9771-10211:-1:exon

CYLST_RS32030
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32030
old locus tag: Cylst_6393
so part of: sequence
location: complement(10325..10570)
location: region:10325-10570:-1
so has part: feature:10325-10570:-1:exon
subclass of: SO_0000010

position:10325:-1
position: 10325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10570:-1
position: 10570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10325-10570:-1:exon

CYLST_RS32030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32030
old locus tag: Cylst_6393
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013651460.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2188 domain-containing protein
translation: MPTENDRYVVNHPEGWAVKKAHAKRASGVFDTKAEAEAYAKEIVGNNGGGEVRSQDTHGKWSDSDTVKPGNDPKSSTDTKH
SIO_010081: CYLST_RS32030
subclass of: SO_0000673
so part of: CYLST_RS32030
location: complement(10325..10570)
location: region:10325-10570:-1
so has part: feature:10325-10570:-1:exon

WP_015211444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10325-10570:-1:exon

CYLST_RS32035
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32035
so part of: sequence
location: 11317..11535
location: region:11317-11535:1
so has part: feature:11317-11535:1:exon
subclass of: SO_0000010

position:11317:1
position: 11317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11535:1
position: 11535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11317-11535:1:exon

CYLST_RS32035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIAYAIAQQIARSPLPPKLGKDGGQKMPIAKPEQPASRVKPMAVAIQAKIAIGHCDAGNHQLAVVSKVDIM
SIO_010081: CYLST_RS32035
subclass of: SO_0000673
so part of: CYLST_RS32035
location: 11317..11535
location: region:11317-11535:1
so has part: feature:11317-11535:1:exon

WP_041234267.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11317-11535:1:exon

CYLST_RS35045
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS35045
so part of: sequence
location: complement(12610..12747)
location: region:12610-12747:-1
so has part: feature:12610-12747:-1:exon
subclass of: SO_0000010

position:12610:-1
position: 12610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12747:-1
position: 12747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12610-12747:-1:exon

CYLST_RS35045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS35045
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPIAKPEQPASRVKPMAVAIQAKIAIGHCDAGNHQLAVVSKVDIM
SIO_010081: CYLST_RS35045
subclass of: SO_0000673
so part of: CYLST_RS35045
location: complement(12610..12747)
location: region:12610-12747:-1
so has part: feature:12610-12747:-1:exon

WP_157162755.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12610-12747:-1:exon

CYLST_RS32040
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32040
old locus tag: Cylst_6394
so part of: sequence
location: complement(13609..17439)
location: region:13609-17439:-1
so has part: feature:13609-17439:-1:exon
subclass of: SO_0000010

position:13609:-1
position: 13609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17439:-1
position: 17439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13609-17439:-1:exon

CYLST_RS32040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32040
old locus tag: Cylst_6394
inference: COORDINATES: protein motif:HMM:NF024367.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3854 domain-containing protein
translation: MTIIVNSTIIGNSQERIFSQSSHNSTNLTDSYENHSQNSVLTDSYGFLASNSGSGSVSTDVHGLICGNLLALQTALNCIDFVKFRDLLKFRAIGSKAKSFTVKAVKRLYKLIKGNSVQKPLQEIKSAKTKKTETETELRAKYQTFLENYPEAKLIYKHWKDLELSGIDDGIKALNYISVEGNTTYSYILSDVEKRINTGGLTASTMRMYGHLYAGGMVCKTVDLINSRDESEWCQVKPNQPRPGKNGKPVKYEAPKGKKGNLTELYALKLPRHIKEKFCEDPLVLDGQDWGFWQYVRDKGLTIVITEGSKKAAALLSHGILAIAVSGVWLWGVSEKDGNGKVINRELIPALQYFVDVPREWVVCFDSDAKHKTVVGVSKALNSLGFAIKKQKSTVSVMSWNGAIGKGIDDVIFNAGKDYLDIIYQAKIPFIEWGTSNLNKLLIDADLLINKEKIGILDIPADRNLIFIKSDKNTGKTWAISEWLKQFSEGEQKRILAIVHRVQLGRALCEKFKLPYVDDKTEQSQIDKLVYGYGLCINSLHPFSQARFNPDSWKGAIIVLDEVCQLIWHLLTDPNMKQQRVRVFNNFKLLLNTVIKSGGKIICADADLNDIAVNFICSLIDGNKKRYIIVNEYKYKNPWKICNFTGTTPGSLVKVAFDQLKRGKKLLFCLSGQKIKAKYGSQYLSEEIKKRFPELKVLIVDGQTVADPQSPAYKCTERLNEVLLDYDVVLCTSVIETGVSIDIDRFDAVFGIFSGLQTANTVRQFLARYRKPVPRFIWISKKGLSKVGNGMIWANGILGDEKTRQAELKDYLRQNGLQEDLETGGYSFDPFTTAWAKFGAFINYTNRNYRESILNGLREEGHIICDNVLPTLDYEPIQLPSESEEKALRKEIAEGCKEAYRVDRVETTKADDIEPTQIETLKKQREMTVKERRELRKASIKQSYGVETVTEELVKADDKDLYNRLYLFYLWSKGRELMPKLDIRKYELAKKYGDGRAYLVDLKSYRNKVEALDTIDFDALLELDNFDKNNETLQECFNVILDNFWKFQKLFFPLTGKWKIEQEILENPMEMAQRIVGWVGLAFVKGKRVGSDGNRVQMWHKPACKVIDANQVCEYWYNRDLERLQKHETEKAKERELMEEMGIDSVSEFYQTVPNYEPNREELTGNESYGQAPTLDVDSYVKELQAKTKAEAKELTEFILPQTVDGFTLDDKHINVLPVVRQLVAGKVAQCREDIKALADEFLAALRESMDLRKIVAIWDIVLMDEINGQLLADCY
SIO_010081: CYLST_RS32040
subclass of: SO_0000673
so part of: CYLST_RS32040
location: complement(13609..17439)
location: region:13609-17439:-1
so has part: feature:13609-17439:-1:exon

WP_015211445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13609-17439:-1:exon

CYLST_RS32045
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32045
old locus tag: Cylst_6395
so part of: sequence
location: complement(17804..18136)
location: region:17804-18136:-1
so has part: feature:17804-18136:-1:exon
subclass of: SO_0000010

position:17804:-1
position: 17804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18136:-1
position: 18136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17804-18136:-1:exon

CYLST_RS32045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32045
old locus tag: Cylst_6395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011316435.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTTPGHNNGQPPNRLDRIEAILERVVIQQETSGERLAELTYKVDDFISTANTVLARSAILDDIIVRLDRNFDEMQRKSEEHQQRFEENQRSTNAALERLEAILIKLMDK
SIO_010081: CYLST_RS32045
subclass of: SO_0000673
so part of: CYLST_RS32045
location: complement(17804..18136)
location: region:17804-18136:-1
so has part: feature:17804-18136:-1:exon

WP_015211446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17804-18136:-1:exon

CYLST_RS32050
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32050
old locus tag: Cylst_6396
so part of: sequence
location: complement(18146..18331)
location: region:18146-18331:-1
so has part: feature:18146-18331:-1:exon
subclass of: SO_0000010

position:18146:-1
position: 18146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18331:-1
position: 18331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18146-18331:-1:exon

CYLST_RS32050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32050
old locus tag: Cylst_6396
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017746878.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MDNKNLNIAQLSREIGVTENAIRGYAQNRFSRIDNATAIKLCSFFGVSMGDMFQIQTAEQL
SIO_010081: CYLST_RS32050
subclass of: SO_0000673
so part of: CYLST_RS32050
location: complement(18146..18331)
location: region:18146-18331:-1
so has part: feature:18146-18331:-1:exon

WP_245587577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18146-18331:-1:exon

CYLST_RS32055
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32055
old locus tag: Cylst_6397
so part of: sequence
location: 18546..19214
location: region:18546-19214:1
so has part: feature:18546-19214:1:exon
subclass of: SO_0000010

position:18546:1
position: 18546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19214:1
position: 19214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18546-19214:1:exon

CYLST_RS32055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32055
old locus tag: Cylst_6397
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQDIIDVDCLATEPDTDQTVNSSLNTTEHPTDRSVFTAKDLAAILESTERTVYKYAAKIIEAWHWLPESDFRVDGIYTAKALEEMKRIKACKNANAYIALIASENQKPVIPTAKTSNTGKISSALALPTRQTEVLESRLATIQGNLSAQNISVQDRVKLALTRISEEKQRTNNNQSALDEARKQQIAMKATQDALEEHEVYQQVKNAVKEQLLIEELQQQG
SIO_010081: CYLST_RS32055
subclass of: SO_0000673
so part of: CYLST_RS32055
location: 18546..19214
location: region:18546-19214:1
so has part: feature:18546-19214:1:exon

WP_015211448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18546-19214:1:exon

CYLST_RS32060
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32060
old locus tag: Cylst_6398
so part of: sequence
location: 19470..19730
location: region:19470-19730:1
so has part: feature:19470-19730:1:exon
subclass of: SO_0000010

position:19470:1
position: 19470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19730:1
position: 19730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19470-19730:1:exon

CYLST_RS32060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32060
old locus tag: Cylst_6398
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQEQIKTVLRGIEETLRMIASLTEYQKLQNSEYFTTSNDLTLGDAIQSVSEVYEGILEVQYQEEIAANQARSEAQLDLTQNHPWS
SIO_010081: CYLST_RS32060
subclass of: SO_0000673
so part of: CYLST_RS32060
location: 19470..19730
location: region:19470-19730:1
so has part: feature:19470-19730:1:exon

WP_015211449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19470-19730:1:exon

CYLST_RS32065
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32065
old locus tag: Cylst_6399
so part of: sequence
location: 19736..20023
location: region:19736-20023:1
so has part: feature:19736-20023:1:exon
subclass of: SO_0000010

position:19736:1
position: 19736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20023:1
position: 20023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19736-20023:1:exon

CYLST_RS32065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32065
old locus tag: Cylst_6399
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRLTVKQQNQAYFNALMIQMECSNPTEALNHLLMDLKRRGYSFLEGMEYVPAYTAEALPQRAIKGKLQPAQPAFNHPESDPVIDRLALLLDDFS
SIO_010081: CYLST_RS32065
subclass of: SO_0000673
so part of: CYLST_RS32065
location: 19736..20023
location: region:19736-20023:1
so has part: feature:19736-20023:1:exon

WP_015211450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19736-20023:1:exon

CYLST_RS32070
type: Gene
subclass of: SO_0000704
RO_0002162: 56107
locus tag: CYLST_RS32070
old locus tag: Cylst_6400
so part of: sequence
location: 20105..20866
location: region:20105-20866:1
so has part: feature:20105-20866:1:exon
subclass of: SO_0000010

position:20105:1
position: 20105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20866:1
position: 20866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20105-20866:1:exon

CYLST_RS32070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56107
locus tag: CYLST_RS32070
old locus tag: Cylst_6400
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAHPRGQLTGSKRTQPKTPRVPKTSKLKQTAEKIADTTKAVGETAKAVTTAVGTVANSLGDIAESIGILGTGHTRQEIKSHDAYGGLQLATFNPDGYLASDLFTDSSNLTRTSKAVADEIVSSVEEKRQTLRVVAANLELNTDALKVGVKSEKMTQSAIDYGTSKVGTETKLTQFQTATVQYETALTKLDQSTEKLEHERVTLEGLRNEPDQRRRFWQEKYNLGESRIKQVQLAKYQLDAKIGAIDSESESAE
SIO_010081: CYLST_RS32070
subclass of: SO_0000673
so part of: CYLST_RS32070
location: 20105..20866
location: region:20105-20866:1
so has part: feature:20105-20866:1:exon

WP_015211451.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20105-20866:1:exon