Saccharomyces cerevisiae S288c mitochondrion, complete genome.
type: Entry
definition: Saccharomyces cerevisiae S288c mitochondrion, complete genome.
sequence version: NC_001224.1
sequence date: 2023-04-03
sequence: sequence
division: PLN
label: NC_001224.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Saccharomyces cerevisiae S288C
organism: Saccharomyces cerevisiae S288C
taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
reference: 1
references: 9872396
reference: 2
reference: 3
reference: 4
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to KP263414.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 85779
topology: circular
so has quality: SO_0000988
location: 1..85779
location: region:1-85779:1
RO_0002162: 559292

NC_001224
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae
author: Foury, F.
author: Roganti, T.
author: Lecrenier, N.
author: Purnelle, B.
journal: FEBS Lett.
volume: 440
issue: 3
pages: 325-331
year: 1998
pubmed: 9872396

9872396
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (14-JAN-2015) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
journal: Submitted (12-DEC-2014) Genetics, Saccharomyces Genome Database, Stanford University, Stanford, CA 94305, USA

4
title: Direct Submission
journal: Submitted (16-DEC-1998) Max-Planck-Institut fuer Biochemie, Am Klopferspitz 18a D-82152 Martinsried, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85779:1
position: 85779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-85779:1:source
so part of: sequence
organism: Saccharomyces cerevisiae S288C
organelle: mitochondrion
mol type: genomic DNA
strain: S288C
sub strain: FY1679

559292
type: Taxonomy
SIO_000068: taxonomy

tP(UGG)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tP(UGG)Q
so part of: sequence
location: 731..802
location: region:731-802:1
so has part: feature:731-802:1:exon
subclass of: SO_0000663

854578
type: Gene
SIO_000068: ncbigene

S000007328
type: SGD
SIO_000068: sgd

position:731:1
position: 731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:802:1
position: 802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:731-802:1:exon

tP(UGG)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tP(UGG)Q
product: tRNA-Pro
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial proline tRNA (tRNA-Pro)
SIO_010081: tP(UGG)Q
subclass of: SO_0000673
so part of: tP(UGG)Q
location: 731..802
location: region:731-802:1
so has part: feature:731-802:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:731-802:1:exon

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 559292
note: ORI1; Mitochondrial origin of replication
so part of: sequence
location: complement(4012..4312)
location: region:4012-4312:-1
so has part: feature:4012-4312:-1:region

S000029667
type: SGD
SIO_000068: sgd

position:4012:-1
position: 4012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4312:-1
position: 4312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4012-4312:-1:region

Q0020
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: 15S_RRNA
locus tag: Q0020
so part of: sequence
location: 6546..8194
location: region:6546-8194:1
so has part: feature:6546-8194:1:exon
subclass of: SO_0000573

9164990
type: Gene
SIO_000068: ncbigene

S000007287
type: SGD
SIO_000068: sgd

position:6546:1
position: 6546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8194:1
position: 8194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6546-8194:1:exon

Q0020
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 559292
gene: 15S_RRNA
locus tag: Q0020
product: 15S ribosomal RNA
experiment: EXISTENCE:curator inference:GO:0003735 structural constituent of ribosome [PMID:6262728]
experiment: EXISTENCE:curator inference:GO:0032543 mitochondrial translation [PMID:6262728]
experiment: EXISTENCE:direct assay:GO:0005763 mitochondrial small ribosomal subunit [PMID:6262728]
note: Ribosomal RNA of the small mitochondrial ribosomal subunit; MSU1 allele suppresses ochre stop mutations in mitochondrial protein-coding genes
SIO_010081: Q0020
subclass of: SO_0000673
so part of: Q0020
location: 6546..8194
location: region:6546-8194:1
so has part: feature:6546-8194:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6546-8194:1:exon

tW(UCA)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tW(UCA)Q
so part of: sequence
location: 9374..9447
location: region:9374-9447:1
so has part: feature:9374-9447:1:exon
subclass of: SO_0000663

854581
type: Gene
SIO_000068: ncbigene

S000007337
type: SGD
SIO_000068: sgd

position:9374:1
position: 9374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9447:1
position: 9447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9374-9447:1:exon

tW(UCA)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tW(UCA)Q
product: tRNA-Trp
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial tRNA, annotated as tryptophanyl tRNA (tRNA-Trp); predicted by tRNAscan-SE analysis to have specificity for selenocysteine
SIO_010081: tW(UCA)Q
subclass of: SO_0000673
so part of: tW(UCA)Q
location: 9374..9447
location: region:9374-9447:1
so has part: feature:9374-9447:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9374-9447:1:exon

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 559292
note: ORI8; Mitochondrial origin of replication
so part of: sequence
location: complement(12510..12780)
location: region:12510-12780:-1
so has part: feature:12510-12780:-1:region

S000029331
type: SGD
SIO_000068: sgd

position:12510:-1
position: 12510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12780:-1
position: 12780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12510-12780:-1:region

Q0045
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
alternative label: OXI3
gene: COX1
locus tag: Q0045
gene synonym: OXI3
so part of: sequence
location: 13818..26701
location: region:13818-26701:1
so has part: feature:13818-26701:1:exon
subclass of: SO_0000010

854598
type: Gene
SIO_000068: ncbigene

S000007260
type: SGD
SIO_000068: sgd

position:13818:1
position: 13818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26701:1
position: 26701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13818-26701:1:exon

Q0045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
alternative label: OXI3
gene: COX1
locus tag: Q0045
gene synonym: OXI3
EC number: 7.1.1.9
experiment: EXISTENCE:direct assay:GO:0004129 cytochrome-c oxidase activity [PMID:1331058|PMID:7851399]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961]
experiment: EXISTENCE:direct assay:GO:0005751 mitochondrial respiratory chain complex IV [PMID:1331058]
experiment: EXISTENCE:direct assay:GO:0006123 mitochondrial electron transport, cytochrome c to oxygen [PMID:1331058]
experiment: EXISTENCE:mutant phenotype:GO:0009060 aerobic respiration [PMID:9724417]
note: Subunit I of cytochrome c oxidase (Complex IV); Complex IV is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits; number of introns in different strains varies from 2 to 8, with most strains having 4-6 introns
codon start: 1
transl table: 3
product: cytochrome c oxidase subunit 1
translation: MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISHVVSTYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWLATIHGGSIRLATPMLYAIAFLFLFTMGGLTGVALANASLDVAFHDTYYVVGHFHYVLSMGAIFSLFAGYYYWSPQILGLNYNEKLAQIQFWLIFIGANVIFFPMHFLGINGMPRRIPDYPDAFAGWNYVASIGSFIATLSLFLFIYILYDQLVNGLNNKVNNKSVIYNKAPDFVESNTIFNLNTVKSSSIEFLLTSPPAVHSFNTPAVQS
SIO_010081: Q0045
subclass of: SO_0000673
so part of: Q0045
location: join(13818..13986,16435..16470,18954..18991,20508..20984,21995..22246,23612..23746,25318..25342,26229..26701)
location: region:13818-26701:1
so has part: feature:13818-13986:1:exon
so has part: feature:16435-16470:1:exon
so has part: feature:18954-18991:1:exon
so has part: feature:20508-20984:1:exon
so has part: feature:21995-22246:1:exon
so has part: feature:23612-23746:1:exon
so has part: feature:25318-25342:1:exon
so has part: feature:26229-26701:1:exon

NP_009305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13818-13986:1:exon

position:13986:1
position: 13986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16435-16470:1:exon

position:16435:1
position: 16435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16470:1
position: 16470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:18954-18991:1:exon

position:18954:1
position: 18954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18991:1
position: 18991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:20508-20984:1:exon

position:20508:1
position: 20508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20984:1
position: 20984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:21995-22246:1:exon

position:21995:1
position: 21995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22246:1
position: 22246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:23612-23746:1:exon

position:23612:1
position: 23612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23746:1
position: 23746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:25318-25342:1:exon

position:25318:1
position: 25318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25342:1
position: 25342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:26229-26701:1:exon

position:26229:1
position: 26229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Q0070
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: AI5_ALPHA
locus tag: Q0070
so part of: sequence
location: 13818..23167
location: region:13818-23167:1
so has part: feature:13818-23167:1:exon
subclass of: SO_0000010

854597
type: Gene
SIO_000068: ncbigene

S000007265
type: SGD
SIO_000068: sgd

position:23167:1
position: 23167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13818-23167:1:exon

Q0070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: AI5_ALPHA
locus tag: Q0070
experiment: EXISTENCE:mutant phenotype:GO:0004519 endonuclease activity [PMID:1314207]
experiment: EXISTENCE:mutant phenotype:GO:0006316 movement of group I intron [PMID:1314207]
note: Endonuclease I-SceIV; involved in intron mobility; encoded by a mobile group I intron within the mitochondrial COX1 gene
codon start: 1
transl table: 3
product: intron-encoded DNA endonuclease aI5 alpha
translation: MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISHVVSTYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWLMNPFSKDKNKNKNKKLIRNYQKMNNNNMMKTYLNNNNMIMMNMYKGNLYDIYPRSNRNYIQPNNINKELVVYGYNLESCVGMPTYTNIVKHMVGIPNNILYIMTGILLTDGWIDYTSKKDLDKKTIMEINCRFRLKQSMIHSEYLMYVFMLLSHYCMSYPKMKIAKVKGKSYNQLEFYTRSLPCFTILRYMFYNGRVKIVPNNLYDLLNYESLAHMIMCDGSFVKGGGLYLNLQSFTTKELIFIMNILKIKFNLNCTLHKSRNKYTIYMRVESVKRLFPMIYKYILPSMRYKFDIMLWQKKYNMIN
SIO_010081: Q0070
subclass of: SO_0000673
so part of: Q0070
location: join(13818..13986,16435..16470,18954..18991,20508..20984,21995..23167)
location: region:13818-23167:1
so has part: feature:13818-13986:1:exon
so has part: feature:16435-16470:1:exon
so has part: feature:18954-18991:1:exon
so has part: feature:20508-20984:1:exon
so has part: feature:21995-23167:1:exon

NP_009306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13818-13986:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16435-16470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18954-18991:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:20508-20984:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:21995-23167:1:exon

Q0065
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: AI4
locus tag: Q0065
so part of: sequence
location: 13818..21935
location: region:13818-21935:1
so has part: feature:13818-21935:1:exon
subclass of: SO_0000010

854596
type: Gene
SIO_000068: ncbigene

S000007264
type: SGD
SIO_000068: sgd

position:21935:1
position: 21935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13818-21935:1:exon

Q0065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: AI4
locus tag: Q0065
experiment: EXISTENCE:direct assay:GO:0004519 endonuclease activity [PMID:7588637]
experiment: EXISTENCE:direct assay:GO:0008380 RNA splicing [PMID:7588637]
experiment: EXISTENCE:mutant phenotype:GO:0006314 intron homing [PMID:2536592]
note: Endonuclease I-SceII; encoded by a mobile group I intron within the mitochondrial COX1 gene; intron is normally spliced by the BI4p maturase but AI4p can mutate to acquire the same maturase activity
codon start: 1
transl table: 3
product: intron-encoded DNA endonuclease aI4
translation: MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIMLMMYNDMHFSKCWKLLKKWITNIMSTLFKALFVKMFMSYNNQQDKMMNNTMLKKDNIKRSSETTRKMLNNSMNKKFNQWLAGLIDGDGYFGIVSKKYVSLEITVALEDEMALKEIQNKFGGSIKLRSGVKAIRYRLTNKTGMIKLINAVNGNIRNTKRLVQFNKVCILLGIDFIYPIKLTKDNSWFVGFFDADGTINYSFKNNHPQLTISVTNKYLQDVQEYKNILGGNIYFDKSQNGYYKWSIQSKDMVLNFINDYIKMNPSRTTKMNKLYLSKEFYNLKELKAYNKSSDSMQYKAWLNFENKWKNK
SIO_010081: Q0065
subclass of: SO_0000673
so part of: Q0065
location: join(13818..13986,16435..16470,18954..18991,20508..21935)
location: region:13818-21935:1
so has part: feature:13818-13986:1:exon
so has part: feature:16435-16470:1:exon
so has part: feature:18954-18991:1:exon
so has part: feature:20508-21935:1:exon

NP_009307.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13818-13986:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16435-16470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18954-18991:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:20508-21935:1:exon

Q0060
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: AI3
locus tag: Q0060
so part of: sequence
location: 13818..19996
location: region:13818-19996:1
so has part: feature:13818-19996:1:exon
subclass of: SO_0000010

854595
type: Gene
SIO_000068: ncbigene

S000007263
type: SGD
SIO_000068: sgd

position:19996:1
position: 19996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13818-19996:1:exon

Q0060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: AI3
locus tag: Q0060
experiment: EXISTENCE:direct assay:GO:0004519 endonuclease activity [PMID:7797552]
note: Endonuclease I-SceIII; encoded by a mobile group I intron within the mitochondrial COX1 gene
codon start: 1
transl table: 3
product: intron-encoded DNA endonuclease aI3
translation: MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNQKRYESNNNNNQVMENKEYNLKLNYDKLGPYLAGLIEGDGTITVQNSSSMKKSKYRPLIVVVFKLEDLELANYLCNLTKCGKVYKKINRNYVLWTIHDLKGVYTLLNIINGYMRTPKYEAFVRGAEFMNNYINSTTITHNKLKNMDNIKIKPLDTSDIGSNAWLAGMTDADGNFSINLMNGKNRSSRAMPYYCLELRQNYQKNSNNNNINFSYFYIMSAIATYFNVNLYSRERNLNLLVSTNNTYKTYYSYKVMVANTYKNIKVMEYFNKYSLLSSKHLDFLDWSKLVILINNEGQSMKTNGSWELGMNLRKDYNKTRTTFTWSHLKNTYLENK
SIO_010081: Q0060
subclass of: SO_0000673
so part of: Q0060
location: join(13818..13986,16435..16470,18954..19996)
location: region:13818-19996:1
so has part: feature:13818-13986:1:exon
so has part: feature:16435-16470:1:exon
so has part: feature:18954-19996:1:exon

NP_009308.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13818-13986:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16435-16470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18954-19996:1:exon

Q0055
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: AI2
locus tag: Q0055
so part of: sequence
location: 13818..18830
location: region:13818-18830:1
so has part: feature:13818-18830:1:exon
subclass of: SO_0000010

854594
type: Gene
SIO_000068: ncbigene

S000007262
type: SGD
SIO_000068: sgd

position:18830:1
position: 18830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13818-18830:1:exon

Q0055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: AI2
locus tag: Q0055
experiment: EXISTENCE:direct assay:GO:0003964 RNA-directed DNA polymerase activity [PMID:7681727]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:7681727]
experiment: EXISTENCE:mutant phenotype:GO:0006314 intron homing [PMID:14612420]
note: Reverse transcriptase required for splicing of the COX1 pre-mRNA; encoded by a mobile group II intron within the mitochondrial COX1 gene
codon start: 1
transl table: 3
product: intron-encoded reverse transcriptase aI2
translation: MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFCAPFRLIYHCIEVLIDKHISVYSINENFTVSFWFWLLVVTYMVFRYVNHMAYPVGANSTGTMACHKSAGVKQPAQGKNCPMARLTNSCKECLGFSLTPSHLGIVIHAYVLEEEVHELTKNESLALSKSWHLEGCTSSNGKLRNTGLSERGNPGDNGVFMVPKFNLNKVRYFSTLSKLNARKEDSLAYLTKINTTDFSELNKLMENNHNKTETINTRILKLMSDIRMLLIAYNKIKSKKGNMSKGSNNITLDGINISYLNKLSKDINTNMFKFSPVRRVEIPKTSGGFRPLSVGNPREKIVQESMRMMLEIIYNNSFSYYSHGFRPNLSCLTAIIQCKNYMQYCNWFIKVDLNKCFDTIPHNMLINVLNERIKDKGFMDLLYKLLRAGYVDKNNNYHNTTLGIPQGSVVSPILCNIFLDKLDKYLENKFENEFNTGNMSNRGRNPIYNSLSSKIYRCKLLSEKLKLIRLRDHYQRNMGSDKSFKRAYFVRYADDIIIGVMGSHNDCKNILNDINNFLKENLGMSINMDKSVIKHSKEGVSFLGYDVKVTPWEKRPYRMIKKGDNFIRVRHHTSLVVNAPIRSIVMKLNKHGYCSHGILGKPRGVGRLIHEEMKTILMHYLAVGRGIMNYYRLATNFTTLRGRITYILFYSCCLTLARKFKLNTVKKVILKFGKVLVDPHSKVSFSIDDFKIRHKMNMTDSNYTPDEILDRYKYMLPRSLSLFSGICQICGSKHDLEVHHVRTLNNAANKIKDDYLLGRMIKMNRKQITICKTCHFKVHQGKYNGPGL
SIO_010081: Q0055
subclass of: SO_0000673
so part of: Q0055
location: join(13818..13986,16435..18830)
location: region:13818-18830:1
so has part: feature:13818-13986:1:exon
so has part: feature:16435-18830:1:exon

NP_009309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13818-13986:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16435-18830:1:exon

Q0050
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: AI1
locus tag: Q0050
so part of: sequence
location: 13818..16322
location: region:13818-16322:1
so has part: feature:13818-16322:1:exon
subclass of: SO_0000010

854593
type: Gene
SIO_000068: ncbigene

S000007261
type: SGD
SIO_000068: sgd

position:16322:1
position: 16322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13818-16322:1:exon

Q0050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: AI1
locus tag: Q0050
experiment: EXISTENCE:direct assay:GO:0006315 homing of group II introns [PMID:11687644]
experiment: EXISTENCE:direct assay:GO:0006397 mRNA processing [PMID:11687644]
experiment: EXISTENCE:mutant phenotype:GO:0003964 RNA-directed DNA polymerase activity [PMID:15925309]
experiment: EXISTENCE:mutant phenotype:GO:0005739 mitochondrion [PMID:15925309]
experiment: EXISTENCE:mutant phenotype:GO:0006278 RNA-templated DNA biosynthetic process [PMID:15925309]
note: Reverse transcriptase required for splicing of the COX1 pre-mRNA; encoded by a mobile group II intron within the mitochondrial COX1 gene
codon start: 1
transl table: 3
product: intron-encoded reverse transcriptase aI1
translation: MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTSAYISLMRTALVLWIINRYLKHMTNSVGANFTGTMACHKTPMISVGGVKCYMVRLTNFLQVFIRITISSYHLDMVKQVWLFYVEVIRLWFIVLDSTGSVKKMKDTNNTKGNTKSEGSTERGNSGVDRGMVVPNTQMKMRFLNQVRYYSVNNNLKMGKDTNIELSKDTSTSDLLEFEKLVMDNMNEENMNNNLLSIMKNVDMLMLAYNRIKSKPGNMTPGTTLETLDGMNMMYLNKLSNELGTGKFKFKPMRMVNIPKPKGGMRPLSVGNPRDKIVQEVMRMILDTIFDKKMSTHSHGFRKNMSCQTAIWEVRNMFGGSNWFIEVDLKKCFDTISHDLIIKELKRYISDKGFIDLVYKLLRAGYIDEKGTYHKPMLGLPQGSLISPILCNIVMTLVDNWLEDYINLYNKGKVKKQHPTYKKLSRMIAKAKMFSTRLKLHKERAKGPTFIYNDPNFKRMKYVRYADDILIGVLGSKNDCKMIKRDLNNFLNSLGLTMNEEKTLITCATETPARFLGYNISITPLKRMPTVTKTIRGKTIRSRNTTRPIINAPIRDIINKLATNGYCKHNKNGRMGVPTRVGRWTYEEPRTIINNYKALGRGILNYYKLATNYKRLRERIYYVLYYSCVLTLASKYRLKTMSKTIKKFGYNLNIIENDKLIANFPRNTFDNIKKIENHGMFMYMSEAKVTDPFEYIDSIKYMLPTAKANFNKPCSICNSTIDVEMHHVKQLHRGMLKATKDYITGRMITMNRKQIPLCKQCHIKTHKNKFKNMGPGM
SIO_010081: Q0050
subclass of: SO_0000673
so part of: Q0050
location: 13818..16322
location: region:13818-16322:1
so has part: feature:13818-16322:1:exon

NP_009310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13818-16322:1:exon

Q0075
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: AI5_BETA
locus tag: Q0075
so part of: sequence
location: 24156..25255
location: region:24156-25255:1
so has part: feature:24156-25255:1:exon
subclass of: SO_0000010

854599
type: Gene
SIO_000068: ncbigene

S000007266
type: SGD
SIO_000068: sgd

position:24156:1
position: 24156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25255:1
position: 25255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24156-25255:1:exon

Q0075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: AI5_BETA
locus tag: Q0075
note: hypothetical protein; encoded within an intron of the mitochondrial COX1 gene; translational initiation codon is predicted to be ATA rather than ATG
codon start: 1
transl table: 3
product: intron-encoded DNA endonuclease aI5 beta
translation: MLMLLMMILTNNKVFMETLYYYLMFNFQLMSPFGVPVPGPAPETKDIKNLYESIMNNYINILNKYTININKDNINKLKFLDNYTEEEKGYYLSGLFEGDGNIYTRCFSITFSLEDVLLANYLCTYFKIGHITAKYNFNKELTAVKWNIMKKKEQEVFMNYINGKLLTYKRYDQYFKYNFNNRLNIKLLKPKEFDLTLNPWLTGFNDADGYFYTGFQKHKNSQWLKFHLELSQKDSYILDIIKKYFKTGGILKRDYKSGATAYIYKAQSSKAMKPFIEYFNNYQPLSTRRYKQYLLLNIAYLLKLNKLHMLTNSLLMLKELMLLQSVKNMSLEMKNELNNRVKIIINKTHYNNIE
SIO_010081: Q0075
subclass of: SO_0000673
so part of: Q0075
location: join(24156..24870,24906..25255)
location: region:24156-25255:1
so has part: feature:24156-24870:1:exon
so has part: feature:24906-25255:1:exon

NP_009311.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24156-24870:1:exon

position:24870:1
position: 24870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:24906-25255:1:exon

position:24906:1
position: 24906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Q0080
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
alternative label: AAP1
gene: ATP8
locus tag: Q0080
gene synonym: AAP1
so part of: sequence
location: 27666..27812
location: region:27666-27812:1
so has part: feature:27666-27812:1:exon
subclass of: SO_0000010

854600
type: Gene
SIO_000068: ncbigene

S000007267
type: SGD
SIO_000068: sgd

position:27666:1
position: 27666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27812:1
position: 27812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27666-27812:1:exon

Q0080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
alternative label: AAP1
gene: ATP8
locus tag: Q0080
gene synonym: AAP1
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961]
experiment: EXISTENCE:direct assay:GO:0015986 proton movtive force-driven ATP synthesis[PMID:20691145]
experiment: EXISTENCE:direct assay:GO:0046933 proton-transporting ATP synthase activity, rotational mechanism [PMID:20691145]
experiment: EXISTENCE:mutant phenotype:GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [PMID:8662204]
experiment: EXISTENCE:mutant phenotype:GO:0015986 proton motive force-driven ATP synthesis[PMID:8662204]
experiment: EXISTENCE:mutant phenotype:GO:0046933 proton-transporting ATP synthase activity, rotational mechanism [PMID:8662204]
note: Subunit 8 of the F0 sector of mitochondrial F1F0 ATP synthase; encoded on the mitochondrial genome; ATP8 and ATP6 mRNAs are not translated in the absence of the F1 sector of ATPase
codon start: 1
transl table: 3
product: F1F0 ATP synthase subunit 8
translation: MPQLVPFYFMNQLTYGFLLMITLLILFSQFFLPMILRLYVSRLFISKL
SIO_010081: Q0080
subclass of: SO_0000673
so part of: Q0080
location: 27666..27812
location: region:27666-27812:1
so has part: feature:27666-27812:1:exon

NP_009312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27666-27812:1:exon

Q0085
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
alternative label: OLI2
alternative label: OLI4
alternative label: PHO1
gene: ATP6
locus tag: Q0085
gene synonym: OLI2; OLI4; PHO1
so part of: sequence
location: 28487..29266
location: region:28487-29266:1
so has part: feature:28487-29266:1:exon
subclass of: SO_0000010

854601
type: Gene
SIO_000068: ncbigene

S000007268
type: SGD
SIO_000068: sgd

position:28487:1
position: 28487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29266:1
position: 29266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28487-29266:1:exon

Q0085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
alternative label: OLI2
alternative label: OLI4
alternative label: PHO1
gene: ATP6
locus tag: Q0085
gene synonym: OLI2; OLI4; PHO1
experiment: EXISTENCE:direct assay:GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [PMID:18722382]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961]
experiment: EXISTENCE:direct assay:GO:0015986 proton motive force-driven ATP synthesis[PMID:20691145]
experiment: EXISTENCE:direct assay:GO:0046933 proton-transporting ATP synthase activity, rotational mechanism [PMID:20691145]
experiment: EXISTENCE:mutant phenotype:GO:0015986 proton motive force-driven ATP synthesis[PMID:17940284|PMID:6251866]
experiment: EXISTENCE:mutant phenotype:GO:0046933 proton-transporting ATP synthase activity, rotational mechanism [PMID:17940284|PMID:6251866]
note: Subunit a of the F0 sector of mitochondrial F1F0 ATP synthase; mitochondrially encoded; translation is specifically activated by Atp22p; ATP6 and ATP8 mRNAs are not translated in the absence of the F1 sector of ATPase; mutations in human ortholog MT-ATP6 are associated with neurodegenerative disorders such as Neurogenic Ataxia and Retinitis Pigmentosa (NARP), Leigh syndrome (LS), Charcot-Marie-Tooth (CMT), and ataxia telangiectasia
codon start: 1
transl table: 3
product: F1F0 ATP synthase subunit a
translation: MFNLLNTYITSPLDQFEIRTLFGLQSSFIDLSCLNLTTFSLYTIIVLLVITSLYTLTNNNNKIIGSRWLISQEAIYDTIMNMTKGQIGGKNWGLYFPMIFTLFMFIFIANLISMIPYSFALSAHLVFIISLSIVIWLGNTILGLYKHGWVFFSLFVPAGTPLPLVPLLVIIETLSYFARAISLGLRLGSNILAGHLLMVILAGLTFNFMLINLFTLVFGFVPLAMILAIMMLEFAIGIIQGYVWAILTASYLKDAVYLH
SIO_010081: Q0085
subclass of: SO_0000673
so part of: Q0085
location: 28487..29266
location: region:28487-29266:1
so has part: feature:28487-29266:1:exon

NP_009313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28487-29266:1:exon

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 559292
note: ORI7; Mitochondrial origin of replication
so part of: sequence
location: 30220..30594
location: region:30220-30594:1
so has part: feature:30220-30594:1:region

S000029673
type: SGD
SIO_000068: sgd

position:30220:1
position: 30220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30594:1
position: 30594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30220-30594:1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 559292
note: ORI2; Mitochondrial origin of replication
so part of: sequence
location: 32231..32501
location: region:32231-32501:1
so has part: feature:32231-32501:1:region

S000029668
type: SGD
SIO_000068: sgd

position:32231:1
position: 32231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32501:1
position: 32501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32231-32501:1:region

tE(UUC)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tE(UUC)Q
so part of: sequence
location: 35373..35444
location: region:35373-35444:1
so has part: feature:35373-35444:1:exon
subclass of: SO_0000663

854603
type: Gene
SIO_000068: ncbigene

S000007318
type: SGD
SIO_000068: sgd

position:35373:1
position: 35373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35444:1
position: 35444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35373-35444:1:exon

tE(UUC)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tE(UUC)Q
product: tRNA-Glu
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial glutamate tRNA (tRNA-Glu); predicted by tRNAscan-SE analysis
SIO_010081: tE(UUC)Q
subclass of: SO_0000673
so part of: tE(UUC)Q
location: 35373..35444
location: region:35373-35444:1
so has part: feature:35373-35444:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35373-35444:1:exon

Q0105
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
alternative label: COB1
alternative label: CYTB
gene: COB
locus tag: Q0105
gene synonym: COB1; CYTB
so part of: sequence
location: 36540..43647
location: region:36540-43647:1
so has part: feature:36540-43647:1:exon
subclass of: SO_0000010

854583
type: Gene
SIO_000068: ncbigene

S000007270
type: SGD
SIO_000068: sgd

position:36540:1
position: 36540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43647:1
position: 43647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36540-43647:1:exon

Q0105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
alternative label: COB1
alternative label: CYTB
gene: COB
locus tag: Q0105
gene synonym: COB1; CYTB
EC number: 7.1.1.8
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961]
experiment: EXISTENCE:direct assay:GO:0005750 mitochondrial respiratory chain complex III [PMID:10873857|PMID:391561]
experiment: EXISTENCE:direct assay:GO:0008121 ubiquinol-cytochrome-c reductase activity [PMID:391561]
experiment: EXISTENCE:mutant phenotype:GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c [PMID:391561]
experiment: EXISTENCE:mutant phenotype:GO:0009060 aerobic respiration [PMID:391561]
note: Cytochrome b; mitochondrially-encoded subunit of ubiquinol-cytochrome c reductase complex which includes Cobp, Rip1p, Cyt1p, Cor1p, Qcr2p, Qcr6p, Qcr7p, Qcr8p, Qcr9p, and Qcr10p; number of introns varies between strains from 0 to 6, with most having 5
codon start: 1
transl table: 3
product: cytochrome b
translation: MAFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPNTLGHPDNYIPGNPLVTPASIVPEWYLLPFYAILRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTFKVLSKFFFFIFVFNFVLLGQIGACHVEVPYVLMGQIATFIYFAYFLIIVPVISTIENVLFYIGRVNK
SIO_010081: Q0105
subclass of: SO_0000673
so part of: Q0105
location: join(36540..36954,37723..37736,39141..39217,40841..41090,42508..42558,43297..43647)
location: region:36540-43647:1
so has part: feature:36540-36954:1:exon
so has part: feature:37723-37736:1:exon
so has part: feature:39141-39217:1:exon
so has part: feature:40841-41090:1:exon
so has part: feature:42508-42558:1:exon
so has part: feature:43297-43647:1:exon

NP_009315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36540-36954:1:exon

position:36954:1
position: 36954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:37723-37736:1:exon

position:37723:1
position: 37723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37736:1
position: 37736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:39141-39217:1:exon

position:39141:1
position: 39141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39217:1
position: 39217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:40841-41090:1:exon

position:40841:1
position: 40841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41090:1
position: 41090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:42508-42558:1:exon

position:42508:1
position: 42508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42558:1
position: 42558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:43297-43647:1:exon

position:43297:1
position: 43297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Q0120
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: BI4
locus tag: Q0120
so part of: sequence
location: 36540..42251
location: region:36540-42251:1
so has part: feature:36540-42251:1:exon
subclass of: SO_0000010

854582
type: Gene
SIO_000068: ncbigene

S000007273
type: SGD
SIO_000068: sgd

position:42251:1
position: 42251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36540-42251:1:exon

Q0120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: BI4
locus tag: Q0120
experiment: EXISTENCE:direct assay:GO:0000372 Group I intron splicing [PMID:11142386]
experiment: EXISTENCE:direct assay:GO:0003723 RNA binding [PMID:11142386]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:2875797]
experiment: EXISTENCE:mutant phenotype:GO:0000372 Group I intron splicing [PMID:11142386]
experiment: EXISTENCE:mutant phenotype:GO:0090615 mitochondrial mRNA processing [PMID:8917309]
note: Mitochondrial mRNA maturase; forms a complex with Nam2p to mediate splicing of the bI4 intron of the COB gene; encoded by both exon and intron sequences of partially processed COB mRNA
codon start: 1
transl table: 3
product: intron-encoded RNA maturase bI4
translation: MAFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPNTLGQNMALLLITYVINILCAVCWKSLFIKYQWKIYNKTTYYFIIQNILNTKQLNNFVLKFNWTKQYNKMNIVSDLFNPNRVKYYYKEDNQQVTNMNSSNTHLTSNKKNLLVDTSETTRTTKNKFNYLLNIFNMKKMNQIITKRHYSIYKDSNIRFNQWLAGLIDGDGYFCITKNKYASCEITVELKDEKMLRQIQDKFGGSVKLRSGVKAIRYRLQNKEGMIKLINAVNGNIRNSKRLVQFNKVCILLNIDFKEPIKLTKDNAWFMGFFDADGTINYYYSGKLKIRPQLTISVTNKYLHDVEYYREVFGGNIYFDKAKNGYFKWSINNKELHNIFYTYNKSCPSKSNKGKRLFLIDKFYYLYDLLAFKAPHNTALYKAWLKFNEKWNNN
SIO_010081: Q0120
subclass of: SO_0000673
so part of: Q0120
location: join(36540..36954,37723..37736,39141..39217,40841..42251)
location: region:36540-42251:1
so has part: feature:36540-36954:1:exon
so has part: feature:37723-37736:1:exon
so has part: feature:39141-39217:1:exon
so has part: feature:40841-42251:1:exon

NP_009316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36540-36954:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:37723-37736:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:39141-39217:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:40841-42251:1:exon

Q0115
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: BI3
locus tag: Q0115
so part of: sequence
location: 36540..40265
location: region:36540-40265:1
so has part: feature:36540-40265:1:exon
subclass of: SO_0000010

854605
type: Gene
SIO_000068: ncbigene

S000007272
type: SGD
SIO_000068: sgd

position:40265:1
position: 40265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36540-40265:1:exon

Q0115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: BI3
locus tag: Q0115
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:2538624]
experiment: EXISTENCE:direct assay:GO:0000372 Group I intron splicing [PMID:11773622]
experiment: EXISTENCE:direct assay:GO:0003723 RNA binding [PMID:11773622]
experiment: EXISTENCE:direct assay:GO:0090615 mitochondrial mRNA processing [PMID:11773622]
experiment: EXISTENCE:mutant phenotype:GO:0090615 mitochondrial mRNA processing [PMID:2538624]
note: Mitochondrial mRNA maturase; forms a complex with Mrs1p to mediate splicing of the bI3 intron of the COB gene; encoded by both exon and intron sequences of partially processed COB mRNA
codon start: 1
transl table: 3
product: cytochrome b mRNA maturase bI3
translation: MAFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFNMEDPYYSNMMLNKSVLCWNIFIWMMNYYIIQLIIYNNMIWNKNNMVKMFIMRRKLAVINMYMYMKLIIQRTYSYYMNNTIIYDKNHKLNTDNPIYAYIGGLFEGDGWITISKKGKYLLYELGIEMHIRDIQLLYKIKNILGIGKVTIKKLKMKDGTIKEMCKFNVRNKNHLKNIIIPIFDKYPMLTNKHYDYLYFKDNLLKDIKYYNDLSYYLRPIKPFNTTEDILNKNYFSSWLIGFFEAESCFSIYKPMNKKMKTASFEVSQNNSMEVMLAIKSYLKITQNIYTDKFNNSRMTTKSINGIKNVVMFINNNPIKLLGYKKLQYLLFLKDLRTITKYNNYFKIPPKY
SIO_010081: Q0115
subclass of: SO_0000673
so part of: Q0115
location: join(36540..36954,37723..37736,39141..40265)
location: region:36540-40265:1
so has part: feature:36540-36954:1:exon
so has part: feature:37723-37736:1:exon
so has part: feature:39141-40265:1:exon

NP_009317.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36540-36954:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:37723-37736:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:39141-40265:1:exon

Q0110
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: BI2
locus tag: Q0110
so part of: sequence
location: 36540..38579
location: region:36540-38579:1
so has part: feature:36540-38579:1:exon
subclass of: SO_0000010

854604
type: Gene
SIO_000068: ncbigene

S000007271
type: SGD
SIO_000068: sgd

position:38579:1
position: 38579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36540-38579:1:exon

Q0110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: BI2
locus tag: Q0110
experiment: EXISTENCE:direct assay:GO:0004518 nuclease activity [PMID:8670880]
experiment: EXISTENCE:direct assay:GO:0008380 RNA splicing [PMID:8670880]
note: Mitochondrial mRNA maturase with a role in splicing; encoded by both exon and intron sequences of partially processed COB mRNA
codon start: 1
transl table: 3
product: cytochrome b mRNA maturase bI2
translation: MAFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGNMNIASNMFNMMKTIYMMMLMLLIYIFYTIMMRQMMKTKEYTMLIKSMDYINKNKYMINLNMTNKKDMNNNIGPLNMNILSIIYGSMLGDGHAEKRKGGKGTRIVFQQEYCNINYLYYLHSLLANLGYCNTNLPLIKTRLGKKGKIRQYLKFNTWTYDSFNMIYSEWYIKNMSGKGNIKVIPKSLDNYLTPLALAIWIMDDGCKLGKGLKFTTNCFSYKDVQYLTYLLHNKYNIKSTITKGNKENTQFVIYVWKESMPILTKIVSPYIIPSMKYKLGNYL
SIO_010081: Q0110
subclass of: SO_0000673
so part of: Q0110
location: join(36540..36954,37723..38579)
location: region:36540-38579:1
so has part: feature:36540-36954:1:exon
so has part: feature:37723-38579:1:exon

NP_009318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36540-36954:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:37723-38579:1:exon

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 559292
note: ORI6; Mitochondrial origin of replication
so part of: sequence
location: 45227..47927
location: region:45227-47927:1
so has part: feature:45227-47927:1:region

S000029672
type: SGD
SIO_000068: sgd

position:45227:1
position: 45227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47927:1
position: 47927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45227-47927:1:region

Q0130
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
alternative label: ATP9
alternative label: OLI3
gene: OLI1
locus tag: Q0130
gene synonym: ATP9; OLI3
so part of: sequence
location: 46723..46953
location: region:46723-46953:1
so has part: feature:46723-46953:1:exon
subclass of: SO_0000010

854584
type: Gene
SIO_000068: ncbigene

S000007274
type: SGD
SIO_000068: sgd

position:46723:1
position: 46723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46953:1
position: 46953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46723-46953:1:exon

Q0130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
alternative label: ATP9
alternative label: OLI3
gene: OLI1
locus tag: Q0130
gene synonym: ATP9; OLI3
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961]
experiment: EXISTENCE:direct assay:GO:0015986 proton motive force-driven ATP synthesis[PMID:20691145]
experiment: EXISTENCE:direct assay:GO:0016887 ATPase activity [PMID:18722382]
experiment: EXISTENCE:direct assay:GO:0046933 proton-transporting ATP synthase activity, rotational mechanism [PMID:20691145]
experiment: EXISTENCE:physical interaction:GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [PMID:2894987]
note: F0-ATP synthase subunit c (ATPase-associated proteolipid); encoded on the mitochondrial genome; mutation confers oligomycin resistance; expression is specifically dependent on the nuclear genes AEP1 and AEP2
codon start: 1
transl table: 3
product: F0 ATP synthase subunit c
translation: MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV
SIO_010081: Q0130
subclass of: SO_0000673
so part of: Q0130
location: 46723..46953
location: region:46723-46953:1
so has part: feature:46723-46953:1:exon

NP_009319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46723-46953:1:exon

tS(UGA)Q2
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tS(UGA)Q2
so part of: sequence
location: 48201..48290
location: region:48201-48290:1
so has part: feature:48201-48290:1:exon
subclass of: SO_0000663

854585
type: Gene
SIO_000068: ncbigene

S000007333
type: SGD
SIO_000068: sgd

position:48201:1
position: 48201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48290:1
position: 48290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48201-48290:1:exon

tS(UGA)Q2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tS(UGA)Q2
product: tRNA-Ser
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial serine tRNA (tRNA-Ser); predicted by tRNAscan-SE analysis
SIO_010081: tS(UGA)Q2
subclass of: SO_0000673
so part of: tS(UGA)Q2
location: 48201..48290
location: region:48201-48290:1
so has part: feature:48201-48290:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48201-48290:1:exon

Q0140
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
alternative label: uS3m
gene: VAR1
locus tag: Q0140
gene synonym: uS3m
so part of: sequence
location: 48901..50097
location: region:48901-50097:1
so has part: feature:48901-50097:1:exon
subclass of: SO_0000010

854586
type: Gene
SIO_000068: ncbigene

S000007275
type: SGD
SIO_000068: sgd

position:48901:1
position: 48901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50097:1
position: 50097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48901-50097:1:exon

Q0140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
alternative label: uS3m
gene: VAR1
locus tag: Q0140
gene synonym: uS3m
experiment: EXISTENCE:direct assay:GO:0003735 structural constituent of ribosome [PMID:11278769]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961|PMID:24769239]
experiment: EXISTENCE:direct assay:GO:0005761 mitochondrial ribosome [PMID:387793]
experiment: EXISTENCE:direct assay:GO:0005763 mitochondrial small ribosomal subunit [PMID:11278769]
experiment: EXISTENCE:mutant phenotype:GO:0032543 mitochondrial translation [PMID:24186543|PMID:6250484]
note: Mitochondrial ribosomal protein of the small subunit; mitochondrially-encoded; polymorphic in different strains due to variation in number of AAT (asparagine) codons; translated near the mitochondrial inner membrane; may have a role in loss of mitochondrial DNA under stress conditions
codon start: 1
transl table: 3
product: mitochondrial 37S ribosomal protein VAR1
translation: MKLKLLNMILSMMNKTNNNNNIIINNTLDSLMNKKLLLKNMLLDMNNKKMNNMKRMLNNNNMNPAGANPVVHRIGPAGNINNKLQHLNNMNNWNTQIYNYNKNMEIMNTMNDKLINKLLYKMMTLKLNNMNINKIIMSKTINQHSLNKLNIKFYYYNNDINNNNNNNNNNYYMNMMNKLMNIMNNNMNNNLCNILSYYYKKKVTIEPIKLSYIYLNSDIFSKYISLNDMDKYNNGILTNYQRMLNNIMPKLNDHNISMNYINNINNINNNKYNNMINLLNNNNNINNNNNYNNNNNNYIGNINNIYNNMTIDNIPMDILMYKYLVGWSIKFKGRLSNNNGRTSTTNLLNGTFNNKKYLWSNINNNYKLNYIPSNHNLYNNSNINKNGKYNIKVKLNFI
SIO_010081: Q0140
subclass of: SO_0000673
so part of: Q0140
location: 48901..50097
location: region:48901-50097:1
so has part: feature:48901-50097:1:exon

NP_009320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48901-50097:1:exon

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 559292
note: ORI3; Mitochondrial origin of replication
so part of: sequence
location: complement(54567..54840)
location: region:54567-54840:-1
so has part: feature:54567-54840:-1:region

S000029669
type: SGD
SIO_000068: sgd

position:54567:-1
position: 54567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54840:-1
position: 54840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54567-54840:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 559292
note: ORI4; Mitochondrial origin of replication
so part of: sequence
location: complement(56567..56832)
location: region:56567-56832:-1
so has part: feature:56567-56832:-1:region

S000029670
type: SGD
SIO_000068: sgd

position:56567:-1
position: 56567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56832:-1
position: 56832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56567-56832:-1:region

Q0158
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: 21S_RRNA
locus tag: Q0158
so part of: sequence
location: 58009..62447
location: region:58009-62447:1
so has part: feature:58009-62447:1:exon
subclass of: SO_0000573

9164988
type: Gene
SIO_000068: ncbigene

S000007288
type: SGD
SIO_000068: sgd

position:58009:1
position: 58009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62447:1
position: 62447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58009-62447:1:exon

Q0158
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 559292
gene: 21S_RRNA
locus tag: Q0158
product: 21S ribosomal RNA
experiment: EXISTENCE:direct assay:GO:0005762 mitochondrial large ribosomal subunit [PMID:6759872]
experiment: EXISTENCE:mutant phenotype:GO:0003735 structural constituent of ribosome [PMID:6759872]
experiment: EXISTENCE:mutant phenotype:GO:0032543 mitochondrial translation [PMID:6759872]
experiment: EXISTENCE:mutant phenotype:GO:0042255 ribosome assembly [PMID:6759872]
note: Mitochondrial 21S rRNA; intron encodes the I-SceI DNA endonuclease
SIO_010081: Q0158
subclass of: SO_0000673
so part of: Q0158
location: join(58009..60724,61868..62447)
location: region:58009-62447:1
so has part: feature:58009-60724:1:exon
so has part: feature:61868-62447:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:58009-60724:1:exon

position:60724:1
position: 60724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:61868-62447:1:exon

position:61868:1
position: 61868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Q0158
type: Exon
subclass of: SO_0000147
RO_0002162: 559292
gene: 21S_RRNA
locus tag: Q0158
number: 1
SIO_010081: Q0158
subclass of: SO_0000673
so part of: Q0158
location: 58009..60724
location: region:58009-60724:1
so has part: feature:58009-60724:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:58009-60724:1:exon

Q0160
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: SCEI
locus tag: Q0160
so part of: sequence
location: 61022..61729
location: region:61022-61729:1
so has part: feature:61022-61729:1:exon
subclass of: SO_0000010

854590
type: Gene
SIO_000068: ncbigene

S000007279
type: SGD
SIO_000068: sgd

position:61022:1
position: 61022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61729:1
position: 61729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61022-61729:1:exon

Q0160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
gene: SCEI
locus tag: Q0160
experiment: EXISTENCE:direct assay:GO:0004519 endonuclease activity [PMID:16478204|PMID:8335007]
note: I-SceI DNA endonuclease; encoded by the mitochondrial group I intron of the 21S_rRNA gene; mediates gene conversion that propagates the intron into intron-less copies of the 21S_rRNA gene
codon start: 1
transl table: 3
product: intron-encoded endonuclease I-SceI
translation: MKNIKKNQVMNLGPNSKLLKEYKSQLIELNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEWKNKAYMDHVCLLYDQWVLSPPHKKERVNHLGNLVITWGAQTFKHQAFNKLANLFIVNNKKTIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYLIPQMMYKLPNTISSETFLK
SIO_010081: Q0160
subclass of: SO_0000673
so part of: Q0160
location: 61022..61729
location: region:61022-61729:1
so has part: feature:61022-61729:1:exon

NP_009324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61022-61729:1:exon

Q0158
type: Exon
subclass of: SO_0000147
RO_0002162: 559292
gene: 21S_RRNA
locus tag: Q0158
number: 2
SIO_010081: Q0158
subclass of: SO_0000673
so part of: Q0158
location: 61868..62447
location: region:61868-62447:1
so has part: feature:61868-62447:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:61868-62447:1:exon

tT(UGU)Q1
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tT(UGU)Q1
so part of: sequence
location: 63862..63937
location: region:63862-63937:1
so has part: feature:63862-63937:1:exon
subclass of: SO_0000663

854591
type: Gene
SIO_000068: ncbigene

S000007334
type: SGD
SIO_000068: sgd

position:63862:1
position: 63862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63937:1
position: 63937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63862-63937:1:exon

tT(UGU)Q1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tT(UGU)Q1
product: tRNA-Thr
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:375006]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:375006]
experiment: EXISTENCE:direct assay:GO:0030533 triplet codon-amino acid adaptor activity [PMID:375006]
note: Mitochondrial threonine tRNA (tRNA-Thr); predicted by tRNAscan-SE analysis
SIO_010081: tT(UGU)Q1
subclass of: SO_0000673
so part of: tT(UGU)Q1
location: 63862..63937
location: region:63862-63937:1
so has part: feature:63862-63937:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:63862-63937:1:exon

tC(GCA)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tC(GCA)Q
so part of: sequence
location: 64415..64490
location: region:64415-64490:1
so has part: feature:64415-64490:1:exon
subclass of: SO_0000663

854606
type: Gene
SIO_000068: ncbigene

S000007316
type: SGD
SIO_000068: sgd

position:64415:1
position: 64415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64490:1
position: 64490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64415-64490:1:exon

tC(GCA)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tC(GCA)Q
product: tRNA-Cys
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial cysteine tRNA (tRNA-Cys)
SIO_010081: tC(GCA)Q
subclass of: SO_0000673
so part of: tC(GCA)Q
location: 64415..64490
location: region:64415-64490:1
so has part: feature:64415-64490:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:64415-64490:1:exon

tH(GUG)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tH(GUG)Q
so part of: sequence
location: 64596..64670
location: region:64596-64670:1
so has part: feature:64596-64670:1:exon
subclass of: SO_0000663

854607
type: Gene
SIO_000068: ncbigene

S000007321
type: SGD
SIO_000068: sgd

position:64596:1
position: 64596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64670:1
position: 64670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64596-64670:1:exon

tH(GUG)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tH(GUG)Q
product: tRNA-His
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:16777356]
experiment: EXISTENCE:direct assay:GO:0030371 translation repressor activity [PMID:27609601]
experiment: EXISTENCE:direct assay:GO:0043022 ribosome binding [PMID:27609601]
experiment: EXISTENCE:direct assay:GO:0043555 regulation of translation in response to stress [PMID:27609601]
experiment: EXISTENCE:mutant phenotype:GO:0032543 mitochondrial translation [PMID:16777356]
note: Mitochondrial histidine tRNA (tRNA-His); predicted by tRNAscan-SE analysis
SIO_010081: tH(GUG)Q
subclass of: SO_0000673
so part of: tH(GUG)Q
location: 64596..64670
location: region:64596-64670:1
so has part: feature:64596-64670:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:64596-64670:1:exon

tL(UAA)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tL(UAA)Q
so part of: sequence
location: 66095..66179
location: region:66095-66179:1
so has part: feature:66095-66179:1:exon
subclass of: SO_0000663

854609
type: Gene
SIO_000068: ncbigene

S000007324
type: SGD
SIO_000068: sgd

position:66095:1
position: 66095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66179:1
position: 66179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66095-66179:1:exon

tL(UAA)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tL(UAA)Q
product: tRNA-Leu
experiment: EXISTENCE:direct assay:GO:0030371 translation repressor activity [PMID:27609601]
experiment: EXISTENCE:direct assay:GO:0043022 ribosome binding [PMID:27609601]
experiment: EXISTENCE:direct assay:GO:0043555 regulation of translation in response to stress [PMID:27609601]
experiment: EXISTENCE:mutant phenotype:GO:0005739 mitochondrion [PMID:9872396]
experiment: EXISTENCE:mutant phenotype:GO:0006414 translational elongation [PMID:9872396]
experiment: EXISTENCE:mutant phenotype:GO:0032543 mitochondrial translation [PMID:16777356]
note: Mitochondrial leucine tRNA (tRNA-Leu); predicted by tRNAscan-SE analysis; required for mitochondrial translation and indirectly for maintenance of the mitochondrial genome; mutations in the orthologous human gene cause the neurological disease MELAS
SIO_010081: tL(UAA)Q
subclass of: SO_0000673
so part of: tL(UAA)Q
location: 66095..66179
location: region:66095-66179:1
so has part: feature:66095-66179:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:66095-66179:1:exon

tQ(UUG)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tQ(UUG)Q
so part of: sequence
location: 66210..66285
location: region:66210-66285:1
so has part: feature:66210-66285:1:exon
subclass of: SO_0000663

854610
type: Gene
SIO_000068: ncbigene

S000007329
type: SGD
SIO_000068: sgd

position:66210:1
position: 66210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66285:1
position: 66285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66210-66285:1:exon

tQ(UUG)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tQ(UUG)Q
product: tRNA-Gln
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial glutamine tRNA (tRNA-Gln); predicted by tRNAscan-SE analysis; thiolation of uridine at wobble position (34) requires Ncs6p
SIO_010081: tQ(UUG)Q
subclass of: SO_0000673
so part of: tQ(UUG)Q
location: 66210..66285
location: region:66210-66285:1
so has part: feature:66210-66285:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:66210-66285:1:exon

tK(UUU)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tK(UUU)Q
so part of: sequence
location: 67061..67134
location: region:67061-67134:1
so has part: feature:67061-67134:1:exon
subclass of: SO_0000663

854611
type: Gene
SIO_000068: ncbigene

S000007323
type: SGD
SIO_000068: sgd

position:67061:1
position: 67061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67134:1
position: 67134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67061-67134:1:exon

tK(UUU)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tK(UUU)Q
product: tRNA-Lys
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:387075]
note: Mitochondrial lysine tRNA (tRNA-Lys); predicted by tRNAscan-SE analysis; modification of wobble base U34 is decreased at elevated temperatures, decreasing ability to decode AAG codons; this function is performed at high temperature by imported cytoplasmic tRNA-Lys with CUU anticodon
SIO_010081: tK(UUU)Q
subclass of: SO_0000673
so part of: tK(UUU)Q
location: 67061..67134
location: region:67061-67134:1
so has part: feature:67061-67134:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:67061-67134:1:exon

tR(UCU)Q1
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tR(UCU)Q1
so part of: sequence
location: 67309..67381
location: region:67309-67381:1
so has part: feature:67309-67381:1:exon
subclass of: SO_0000663

854612
type: Gene
SIO_000068: ncbigene

S000007331
type: SGD
SIO_000068: sgd

position:67309:1
position: 67309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67381:1
position: 67381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67309-67381:1:exon

tR(UCU)Q1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tR(UCU)Q1
product: tRNA-Arg
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial arginine tRNA (tRNA-Arg); predicted by tRNAscan-SE analysis
SIO_010081: tR(UCU)Q1
subclass of: SO_0000673
so part of: tR(UCU)Q1
location: 67309..67381
location: region:67309-67381:1
so has part: feature:67309-67381:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:67309-67381:1:exon

tG(UCC)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tG(UCC)Q
so part of: sequence
location: 67468..67542
location: region:67468-67542:1
so has part: feature:67468-67542:1:exon
subclass of: SO_0000663

854613
type: Gene
SIO_000068: ncbigene

S000007320
type: SGD
SIO_000068: sgd

position:67468:1
position: 67468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67542:1
position: 67542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67468-67542:1:exon

tG(UCC)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tG(UCC)Q
product: tRNA-Gly
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial glycine tRNA (tRNA-Gly); predicted by tRNAscan-SE analysis
SIO_010081: tG(UCC)Q
subclass of: SO_0000673
so part of: tG(UCC)Q
location: 67468..67542
location: region:67468-67542:1
so has part: feature:67468-67542:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:67468-67542:1:exon

tD(GUC)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tD(GUC)Q
so part of: sequence
location: 68322..68396
location: region:68322-68396:1
so has part: feature:68322-68396:1:exon
subclass of: SO_0000663

854614
type: Gene
SIO_000068: ncbigene

S000007317
type: SGD
SIO_000068: sgd

position:68322:1
position: 68322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68396:1
position: 68396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68322-68396:1:exon

tD(GUC)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tD(GUC)Q
product: tRNA-Asp
experiment: EXISTENCE:mutant phenotype:GO:0005739 mitochondrion [PMID:7024270]
experiment: EXISTENCE:mutant phenotype:GO:0032543 mitochondrial translation [PMID:7024270]
note: Mitochondrial aspartate tRNA (tRNA-Asp); predicted by tRNAscan-SE analysis
SIO_010081: tD(GUC)Q
subclass of: SO_0000673
so part of: tD(GUC)Q
location: 68322..68396
location: region:68322-68396:1
so has part: feature:68322-68396:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68322-68396:1:exon

tS(GCU)Q1
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tS(GCU)Q1
so part of: sequence
location: 69203..69288
location: region:69203-69288:1
so has part: feature:69203-69288:1:exon
subclass of: SO_0000663

854615
type: Gene
SIO_000068: ncbigene

S000007332
type: SGD
SIO_000068: sgd

position:69203:1
position: 69203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69288:1
position: 69288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69203-69288:1:exon

tS(GCU)Q1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tS(GCU)Q1
product: tRNA-Ser
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial serine tRNA (tRNA-Ser); predicted by tRNAscan-SE analysis
SIO_010081: tS(GCU)Q1
subclass of: SO_0000673
so part of: tS(GCU)Q1
location: 69203..69288
location: region:69203-69288:1
so has part: feature:69203-69288:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:69203-69288:1:exon

tR(ACG)Q2
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tR(ACG)Q2
so part of: sequence
location: 69289..69362
location: region:69289-69362:1
so has part: feature:69289-69362:1:exon
subclass of: SO_0000663

854616
type: Gene
SIO_000068: ncbigene

S000007330
type: SGD
SIO_000068: sgd

position:69289:1
position: 69289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69362:1
position: 69362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69289-69362:1:exon

tR(ACG)Q2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tR(ACG)Q2
product: tRNA-Arg
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial arginine tRNA (tRNA-Arg); predicted by tRNAscan-SE analysis
SIO_010081: tR(ACG)Q2
subclass of: SO_0000673
so part of: tR(ACG)Q2
location: 69289..69362
location: region:69289-69362:1
so has part: feature:69289-69362:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:69289-69362:1:exon

tA(UGC)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tA(UGC)Q
so part of: sequence
location: 69846..69921
location: region:69846-69921:1
so has part: feature:69846-69921:1:exon
subclass of: SO_0000663

854617
type: Gene
SIO_000068: ncbigene

S000007315
type: SGD
SIO_000068: sgd

position:69846:1
position: 69846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69921:1
position: 69921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69846-69921:1:exon

tA(UGC)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tA(UGC)Q
product: tRNA-Ala
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial alanine tRNA (tRNA-Ala); predicted by tRNAscan-SE analysis
SIO_010081: tA(UGC)Q
subclass of: SO_0000673
so part of: tA(UGC)Q
location: 69846..69921
location: region:69846-69921:1
so has part: feature:69846-69921:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:69846-69921:1:exon

tI(GAU)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tI(GAU)Q
so part of: sequence
location: 70162..70237
location: region:70162-70237:1
so has part: feature:70162-70237:1:exon
subclass of: SO_0000663

854618
type: Gene
SIO_000068: ncbigene

S000007322
type: SGD
SIO_000068: sgd

position:70162:1
position: 70162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70237:1
position: 70237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70162-70237:1:exon

tI(GAU)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tI(GAU)Q
product: tRNA-Ile
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial isoleucine tRNA (tRNA-Ile); predicted by tRNAscan-SE analysis; mutations in human ortholog are linked to conditions such as progressive encephalopathy, metabolic syndrome, and hypomagnesaemia
SIO_010081: tI(GAU)Q
subclass of: SO_0000673
so part of: tI(GAU)Q
location: 70162..70237
location: region:70162-70237:1
so has part: feature:70162-70237:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:70162-70237:1:exon

tY(GUA)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tY(GUA)Q
so part of: sequence
location: 70824..70907
location: region:70824-70907:1
so has part: feature:70824-70907:1:exon
subclass of: SO_0000663

854619
type: Gene
SIO_000068: ncbigene

S000007338
type: SGD
SIO_000068: sgd

position:70824:1
position: 70824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70907:1
position: 70907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70824-70907:1:exon

tY(GUA)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tY(GUA)Q
product: tRNA-Tyr
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial tyrosine tRNA (tRNA-Tyr)
SIO_010081: tY(GUA)Q
subclass of: SO_0000673
so part of: tY(GUA)Q
location: 70824..70907
location: region:70824-70907:1
so has part: feature:70824-70907:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:70824-70907:1:exon

tN(GUU)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tN(GUU)Q
so part of: sequence
location: 71433..71503
location: region:71433-71503:1
so has part: feature:71433-71503:1:exon
subclass of: SO_0000663

854620
type: Gene
SIO_000068: ncbigene

S000007327
type: SGD
SIO_000068: sgd

position:71433:1
position: 71433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71503:1
position: 71503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71433-71503:1:exon

tN(GUU)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tN(GUU)Q
product: tRNA-Asn
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial asparagine tRNA (tRNA-Asn); predicted by tRNAscan-SE analysis
SIO_010081: tN(GUU)Q
subclass of: SO_0000673
so part of: tN(GUU)Q
location: 71433..71503
location: region:71433-71503:1
so has part: feature:71433-71503:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:71433-71503:1:exon

tM(CAU)Q1
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tM(CAU)Q1
so part of: sequence
location: 72630..72705
location: region:72630-72705:1
so has part: feature:72630-72705:1:exon
subclass of: SO_0000663

854621
type: Gene
SIO_000068: ncbigene

S000007325
type: SGD
SIO_000068: sgd

position:72630:1
position: 72630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72705:1
position: 72705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72630-72705:1:exon

tM(CAU)Q1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tM(CAU)Q1
product: tRNA-Met
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial methionine tRNA (tRNA-Met); predicted by tRNAscan-SE analysis
SIO_010081: tM(CAU)Q1
subclass of: SO_0000673
so part of: tM(CAU)Q1
location: 72630..72705
location: region:72630-72705:1
so has part: feature:72630-72705:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:72630-72705:1:exon

Q0250
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
alternative label: OXI1
alternative label: OXII
gene: COX2
locus tag: Q0250
gene synonym: OXI1; OXII
so part of: sequence
location: 73758..74513
location: region:73758-74513:1
so has part: feature:73758-74513:1:exon
subclass of: SO_0000010

854622
type: Gene
SIO_000068: ncbigene

S000007281
type: SGD
SIO_000068: sgd

position:73758:1
position: 73758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74513:1
position: 74513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73758-74513:1:exon

Q0250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
alternative label: OXI1
alternative label: OXII
gene: COX2
locus tag: Q0250
gene synonym: OXI1; OXII
EC number: 7.1.1.9
experiment: EXISTENCE:direct assay:GO:0004129 cytochrome-c oxidase activity [PMID:1331058|PMID:7851399]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961|PMID:24769239]
experiment: EXISTENCE:direct assay:GO:0005751 mitochondrial respiratory chain complex IV [PMID:1331058]
experiment: EXISTENCE:direct assay:GO:0006123 mitochondrial electron transport, cytochrome c to oxygen [PMID:1331058]
experiment: EXISTENCE:mutant phenotype:GO:0009060 aerobic respiration [PMID:224191]
note: Subunit II of cytochrome c oxidase (Complex IV); Complex IV is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits
codon start: 1
transl table: 3
product: cytochrome c oxidase subunit 2
translation: MLDLLRLQLTTFIMNDVPTPYACYFQDSATPNQEGILELHDNIMFYLLVILGLVSWMLYTIVMTYSKNPIAYKYIKHGQTIEVIWTIFPAVILLIIAFPSFILLYLCDEVISPAMTIKAIGYQWYWKYEYSDFINDSGETVEFESYVIPDELLEEGQLRLLDTDTSMVVPVDTHIRFVVTAADVIHDFAIPSLGIKVDATPGRLNQVSALIQREGVFYGACSELCGTGHANMPIKIEAVSLPKFLEWLNEQ
SIO_010081: Q0250
subclass of: SO_0000673
so part of: Q0250
location: 73758..74513
location: region:73758-74513:1
so has part: feature:73758-74513:1:exon

NP_009326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73758-74513:1:exon

Q0255
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: Q0255
note: ORF1
so part of: sequence
location: 74495..75984
location: region:74495-75984:1
so has part: feature:74495-75984:1:exon
subclass of: SO_0000010

854623
type: Gene
SIO_000068: ncbigene

S000007282
type: SGD
SIO_000068: sgd

position:74495:1
position: 74495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75984:1
position: 75984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74495-75984:1:exon

Q0255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
locus tag: Q0255
note: Maturase-like protein
codon start: 1
transl table: 3
product: maturase-like protein
translation: MIKWTMINIYLLLMFLIIKNNNNNNNYNNITKYNKDMDLYSIQSPYIKNMNIIKRGYHTSLNNKLIIVQKDNKNNNKNNLEMDNFYKWLVGFTDGDGSFYIKLNDKKYLRFFYGFRMHIDDKACLEKIRNMLNMPSNFEETTKTIMLVNSQKKWLYSNIVTIFDKYPCLTIKYYSYYKWKMAMINNLNGMSYNNKDLLNIKNTINNYEVMPNLKIPYDKMNDYWILGFIEAEGSFDTSPKRNICGFNVSQHKRSINTLKAIKSYVLNNWKPIDNTPLLIKNKLLKDWDSSIKLTKPDKNGVIKLEFNRMDFLYYVILPKLYSLKWYSRKEIDFQLWKTTMEIYMKGLHNTTKGSNLLKLINNNINKKRYYSNYNISKNIIDDVLNMNTIYNYKLPYRMNSDIQRLNSMNNNNTKFINVGVFVYDLNNTLIMTFTGYRPAATYFNCSKHEIAKYIKNGNVFMNKYILKNILLD
SIO_010081: Q0255
subclass of: SO_0000673
so part of: Q0255
location: join(74495..75622,75663..75872,75904..75984)
location: region:74495-75984:1
so has part: feature:74495-75622:1:exon
so has part: feature:75663-75872:1:exon
so has part: feature:75904-75984:1:exon

NP_009327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:74495-75622:1:exon

position:75622:1
position: 75622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:75663-75872:1:exon

position:75663:1
position: 75663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75872:1
position: 75872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:75904-75984:1:exon

position:75904:1
position: 75904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tF(GAA)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tF(GAA)Q
so part of: sequence
location: 77431..77505
location: region:77431-77505:1
so has part: feature:77431-77505:1:exon
subclass of: SO_0000663

854624
type: Gene
SIO_000068: ncbigene

S000007319
type: SGD
SIO_000068: sgd

position:77431:1
position: 77431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77505:1
position: 77505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77431-77505:1:exon

tF(GAA)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tF(GAA)Q
product: tRNA-Phe
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial phenylalanine tRNA (tRNA-Phe); predicted by tRNAscan-SE analysis
SIO_010081: tF(GAA)Q
subclass of: SO_0000673
so part of: tF(GAA)Q
location: 77431..77505
location: region:77431-77505:1
so has part: feature:77431-77505:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77431-77505:1:exon

tT(UAG)Q2
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tT(UAG)Q2
so part of: sequence
location: complement(78089..78162)
location: region:78089-78162:-1
so has part: feature:78089-78162:-1:exon
subclass of: SO_0000663

854625
type: Gene
SIO_000068: ncbigene

S000007335
type: SGD
SIO_000068: sgd

position:78089:-1
position: 78089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78162:-1
position: 78162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78089-78162:-1:exon

tT(UAG)Q2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tT(UAG)Q2
product: tRNA-Thr
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:375006]
experiment: EXISTENCE:direct assay:GO:0030533 triplet codon-amino acid adaptor activity [PMID:375006]
experiment: EXISTENCE:mutant phenotype:GO:0070125 mitochondrial translational elongation [PMID:375006]
note: Mitochondrial threonine tRNA (tRNA-Thr); decodes CUA codons as threonine rather than leucine; has an unusual enlarged 8-nt anticodon loop; may be evolutionarily derived from mitochondrial tRNA-His; conserved in some genera of budding yeasts
SIO_010081: tT(UAG)Q2
subclass of: SO_0000673
so part of: tT(UAG)Q2
location: complement(78089..78162)
location: region:78089-78162:-1
so has part: feature:78089-78162:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:78089-78162:-1:exon

tV(UAC)Q
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tV(UAC)Q
so part of: sequence
location: 78533..78608
location: region:78533-78608:1
so has part: feature:78533-78608:1:exon
subclass of: SO_0000663

854626
type: Gene
SIO_000068: ncbigene

S000007336
type: SGD
SIO_000068: sgd

position:78533:1
position: 78533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78608:1
position: 78608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78533-78608:1:exon

tV(UAC)Q
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tV(UAC)Q
product: tRNA-Val
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial valine tRNA (tRNA-Val); predicted by tRNAscan-SE analysis
SIO_010081: tV(UAC)Q
subclass of: SO_0000673
so part of: tV(UAC)Q
location: 78533..78608
location: region:78533-78608:1
so has part: feature:78533-78608:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:78533-78608:1:exon

Q0275
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
alternative label: OXI2
gene: COX3
locus tag: Q0275
gene synonym: OXI2
so part of: sequence
location: 79213..80022
location: region:79213-80022:1
so has part: feature:79213-80022:1:exon
subclass of: SO_0000010

854627
type: Gene
SIO_000068: ncbigene

S000007283
type: SGD
SIO_000068: sgd

position:79213:1
position: 79213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80022:1
position: 80022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79213-80022:1:exon

Q0275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 559292
alternative label: OXI2
gene: COX3
locus tag: Q0275
gene synonym: OXI2
EC number: 7.1.1.9
experiment: EXISTENCE:direct assay:GO:0004129 cytochrome-c oxidase activity [PMID:7851399|PMID:1331058]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:24478450|PMID:16823961]
experiment: EXISTENCE:direct assay:GO:0005751 mitochondrial respiratory chain complex IV [PMID:1331058]
experiment: EXISTENCE:direct assay:GO:0006123 mitochondrial electron transport, cytochrome c to oxygen [PMID:1331058]
experiment: EXISTENCE:mutant phenotype:GO:0009060 aerobic respiration [PMID:11171120]
note: Subunit III of cytochrome c oxidase (Complex IV); Complex IV is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits
codon start: 1
transl table: 3
product: cytochrome c oxidase subunit 3
translation: MTHLERSRHQQHPFHMVMPSPWPIVVSFALLSLALSTALTMHGYIGNMNMVYLALFVLLTSSILWFRDIVAEATYLGDHTMAVRKGINLGFLMFVLSEVLIFAGLFWAYFHSAMSPDVTLGACWPPVGIEAVQPTELPLLNTIILLSSGATVTYSHHALIAGNRNKALSGLLITFWLIVIFVTCQYIEYTNAAFTISDGVYGSVFYAGTGLHFLHMVMLAAMLGVNYWRMRNYHLTAGHHVGYETTIIYTHVLDVIWLFLYVVFYWWGV
SIO_010081: Q0275
subclass of: SO_0000673
so part of: Q0275
location: 79213..80022
location: region:79213-80022:1
so has part: feature:79213-80022:1:exon

NP_009328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79213-80022:1:exon

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 559292
note: ORI5; Mitochondrial origin of replication
so part of: sequence
location: 82329..82600
location: region:82329-82600:1
so has part: feature:82329-82600:1:region

S000029671
type: SGD
SIO_000068: sgd

position:82329:1
position: 82329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82600:1
position: 82600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82329-82600:1:region

tM(CAU)Q2
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
locus tag: tM(CAU)Q2
so part of: sequence
location: 85035..85112
location: region:85035-85112:1
so has part: feature:85035-85112:1:exon
subclass of: SO_0000663

854628
type: Gene
SIO_000068: ncbigene

S000007326
type: SGD
SIO_000068: sgd

position:85035:1
position: 85035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85112:1
position: 85112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85035-85112:1:exon

tM(CAU)Q2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 559292
locus tag: tM(CAU)Q2
product: tRNA-fMet
experiment: EXISTENCE:curator inference:GO:0005739 mitochondrion [PMID:9023104]
experiment: EXISTENCE:curator inference:GO:0070125 mitochondrial translational elongation [PMID:9023104]
note: Mitochondrial formylated methionine tRNA (tRNA-fMet); predicted by tRNAscan-SE analysis
SIO_010081: tM(CAU)Q2
subclass of: SO_0000673
so part of: tM(CAU)Q2
location: 85035..85112
location: region:85035-85112:1
so has part: feature:85035-85112:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85035-85112:1:exon

Q0285
type: Gene
subclass of: SO_0000704
RO_0002162: 559292
gene: RPM1
locus tag: Q0285
so part of: sequence
location: 85295..85777
location: region:85295-85777:1
so has part: feature:85295-85777:1:exon
subclass of: SO_0000011

9164989
type: Gene
SIO_000068: ncbigene

S000029023
type: SGD
SIO_000068: sgd

position:85295:1
position: 85295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85777:1
position: 85777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85295-85777:1:exon

Q0285
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 559292
nc RNA class: other
gene: RPM1
locus tag: Q0285
product: RPM1
experiment: EXISTENCE:direct assay:GO:0001682 tRNA 5'-leader removal [PMID:3537697]
experiment: EXISTENCE:direct assay:GO:0004526 ribonuclease P activity [PMID:8366116]
experiment: EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:11522833]
experiment: EXISTENCE:direct assay:GO:0008033 tRNA processing [PMID:11522833]
experiment: EXISTENCE:direct assay:GO:0030678 mitochondrial ribonuclease P complex [PMID:3537697]
note: RNA component of mitochondrial RNase P; mitochondrial RNase P also contains the protein subunit Rpm2p; RNase P removes 5' extensions from mitochondrial tRNA precursors; RPM1 is conserved in bacteria, fungi, and protozoa
SIO_010081: Q0285
subclass of: SO_0000673
so part of: Q0285
location: 85295..85777
location: region:85295-85777:1
so has part: feature:85295-85777:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85295-85777:1:exon