Cereibacter sphaeroides KD131 plasmid pRSKD131A, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Cereibacter.
Complete genome sequence of Rhodobacter sphaeroides KD131
Submitted (04-SEP-2008) R&D Center, GenoTech Corp. 59-5 Jang-dong, Yuseong-gu, Daejeon 305-343, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP001152.1.\nBacteria available from KCTC\n(http://www.brc.re.kr/English/_SearchView.aspx?sn=12085).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 02:15:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,476\nCDSs (total) :: 4,406\nGenes (coding) :: 4,345\nCDSs (with protein) :: 4,345\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 61\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 31 of 61\nPseudo Genes (incomplete) :: 43 of 61\nPseudo Genes (internal stop) :: 16 of 61\nPseudo Genes (multiple problems) :: 24 of 61\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011331313.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011331314.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009564053.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002725028.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009564051.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564050.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002725025.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011331319.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012643320.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002725022.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012643322.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643323.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009564043.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002725018.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643326.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002725016.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_012643328.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002725014.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725013.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331328.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002725011.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564031.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643334.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564029.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009565797.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011747434.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009565800.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012497785.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009565804.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
molybdopterin guanine dinucleotide-containing S/N-oxide reductase
COORDINATES: similar to AA sequence:RefSeq:WP_012643339.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009565807.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009565808.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565809.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565810.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009565811.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643343.1
COORDINATES: similar to AA sequence:RefSeq:WP_011160182.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565814.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643346.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565817.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009565819.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643348.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011331252.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009565823.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565824.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565825.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565826.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012643352.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012643353.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002724996.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565829.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331258.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012643357.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011331260.1
COORDINATES: similar to AA sequence:RefSeq:WP_018262432.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011910274.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331261.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017140459.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331263.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724987.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643364.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724894.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565840.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724891.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012643368.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643369.1
GO:0004333 - fumarate hydratase activity [Evidence IEA]
GO:0006106 - fumarate metabolic process [Evidence IEA]; GO:0006108 - malate metabolic process [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002724885.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009565846.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002724882.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565848.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565849.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565850.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724876.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011331266.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565854.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565855.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138164.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011331267.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_002724863.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002724861.1
TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_011331270.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011331271.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012643381.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565864.1
GO:0050487 - sulfoacetaldehyde acetyltransferase activity [Evidence IEA]
GO:0019529 - taurine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002724852.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012643383.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002724850.1
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0015948 - methanogenesis [Evidence IEA]
trimethylamine methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009620126.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011331279.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009565871.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015930321.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643389.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331289.1
COORDINATES: similar to AA sequence:RefSeq:WP_015008262.1
GO:0005615 - extracellular space [Evidence IEA]
GO:0005509 - calcium ion binding [Evidence IEA]
M10 family metallopeptidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009564110.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643394.1
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_012643395.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725113.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331295.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017140451.1
COORDINATES: similar to AA sequence:RefSeq:WP_017140450.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331298.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331299.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725100.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643402.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009564096.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643403.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725089.1
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_002725087.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011331304.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725083.1
pyrroline-5-carboxylate reductase dimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002725081.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760461.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009564090.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564089.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564087.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564086.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009564085.1
nitrous oxide reductase family maturation protein NosD
COORDINATES: similar to AA sequence:RefSeq:WP_012643414.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643415.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564082.1
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_012643417.1
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012643418.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817689.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017140446.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725056.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564076.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012643424.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725050.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725048.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331309.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_002725044.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725043.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_009564065.1
COORDINATES: similar to AA sequence:RefSeq:WP_002725038.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643430.1