Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium.
Genome sequence of Mycobacterium kansasii
Submitted (23-OCT-2013) McGill University Health Centre, 1650 Cedar Ave. Room A5.156, Montreal, Quebec H3G1A4, Canada
REFSEQ INFORMATION: The reference sequence is identical to\nCP006836.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. October 2013\nGenome Coverage :: 80x\nSequencing Technology :: 454; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 13:52:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,791\nCDSs (total) :: 5,739\nGenes (coding) :: 5,487\nCDSs (with protein) :: 5,487\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 252\nCDSs (without protein) :: 252\nPseudo Genes (ambiguous residues) :: 0 of 252\nPseudo Genes (frameshifted) :: 105 of 252\nPseudo Genes (incomplete) :: 191 of 252\nPseudo Genes (internal stop) :: 19 of 252\nPseudo Genes (multiple problems) :: 59 of 252\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0052636 - arabinosyltransferase activity [Evidence IEA]
GO:0071766 - Actinobacterium-type cell wall biogenesis [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
arabinosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008713084.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018554129.1
cytochrome c biogenesis CcdA family protein
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: similar to AA sequence:RefSeq:WP_006244065.1
COORDINATES: similar to AA sequence:RefSeq:WP_014711990.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244063.1
COORDINATES: similar to AA sequence:RefSeq:WP_005060597.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020099226.1
COORDINATES: similar to AA sequence:RefSeq:WP_005144472.1
COORDINATES: similar to AA sequence:RefSeq:WP_020102386.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013530.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF020123.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015356190.1
COORDINATES: similar to AA sequence:RefSeq:WP_015356189.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_015356188.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011630964.1
GO:0008726 - alkanesulfonate monooxygenase activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
FMNH2-dependent alkanesulfonate monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_009113538.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:TIGR01728.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0005488 - binding [Evidence IEA]
GO:0042918 - alkanesulfonate transport [Evidence IEA]
aliphatic sulfonate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016777.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007170657.1
COORDINATES: similar to AA sequence:RefSeq:WP_007170660.1
COORDINATES: protein motif:HMM:NF013412.2
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018349327.1
COORDINATES: protein motif:HMM:NF027439.2
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:NP_217944.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006480271.1
COORDINATES: similar to AA sequence:RefSeq:WP_011854800.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003897806.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014817208.1
COORDINATES: similar to AA sequence:RefSeq:WP_020730068.1
COORDINATES: similar to AA sequence:RefSeq:WP_015297643.1
COORDINATES: similar to AA sequence:RefSeq:WP_006242961.1
COORDINATES: similar to AA sequence:RefSeq:WP_014817594.1
glutathione S-transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015307939.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
sulfate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005073529.1
COORDINATES: similar to AA sequence:RefSeq:WP_005136740.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017205516.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017205517.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552892.1
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_005148400.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_005148407.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148408.1
COORDINATES: similar to AA sequence:RefSeq:NP_216314.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03923.1
COORDINATES: similar to AA sequence:RefSeq:WP_003920662.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
type VII secretion-associated serine protease mycosin
COORDINATES: similar to AA sequence:RefSeq:WP_011725134.1
GO:0003674 - molecular_function [Evidence IEA]
type VII secretion integral membrane protein EccD
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF025377.2
COORDINATES: similar to AA sequence:RefSeq:YP_177838.1
COORDINATES: similar to AA sequence:RefSeq:NP_216863.1
COORDINATES: similar to AA sequence:RefSeq:WP_003920669.1
COORDINATES: similar to AA sequence:RefSeq:WP_003406222.1
COORDINATES: similar to AA sequence:RefSeq:WP_020787503.1
COORDINATES: similar to AA sequence:RefSeq:WP_003909511.1
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: similar to AA sequence:RefSeq:WP_015297753.1
COORDINATES: similar to AA sequence:RefSeq:WP_003409968.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011562915.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_086558065.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005113549.1
COORDINATES: similar to AA sequence:RefSeq:NP_215437.1
IS607 family element RNA-guided endonuclease TnpB
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005149396.1
COORDINATES: similar to AA sequence:RefSeq:WP_005113596.1
COORDINATES: similar to AA sequence:RefSeq:WP_003787556.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:NP_216476.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: protein motif:HMM:NF015422.2
helicase associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011896342.1
COORDINATES: similar to AA sequence:RefSeq:WP_007170753.1
COORDINATES: protein motif:HMM:NF013021.2
COORDINATES: protein motif:HMM:NF022280.2
COORDINATES: protein motif:HMM:NF022231.2
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: similar to AA sequence:RefSeq:NP_217874.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:NP_217875.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805378.1
COORDINATES: similar to AA sequence:RefSeq:WP_018604278.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006243437.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011767746.1
COORDINATES: similar to AA sequence:RefSeq:WP_012379801.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_007450841.1
COORDINATES: similar to AA sequence:RefSeq:WP_014379321.1
COORDINATES: similar to AA sequence:RefSeq:WP_005056596.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015297737.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246294.1
COORDINATES: similar to AA sequence:RefSeq:WP_003942432.1
COORDINATES: similar to AA sequence:RefSeq:WP_011767739.1
COORDINATES: similar to AA sequence:RefSeq:WP_013470229.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243420.1
COORDINATES: similar to AA sequence:RefSeq:WP_007171797.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243423.1
COORDINATES: similar to AA sequence:RefSeq:WP_006247570.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552891.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: protein motif:HMM:NF020265.2
COORDINATES: similar to AA sequence:RefSeq:WP_018345767.1
COORDINATES: similar to AA sequence:RefSeq:WP_018562581.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244080.1
COORDINATES: protein motif:HMM:NF018984.2
COORDINATES: similar to AA sequence:RefSeq:WP_011558137.1