Cuculus canorus isolate bCucCan1 chromosome 39, bCucCan1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Cuculus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM030675.1.\nAssembly name: bCucCan1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/04/15. The original whole-genome shotgun project has the\naccession JAGIYT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 30-MAR-2021\nAssembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX\n 8.0.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v.\n 0.3.2; pbgcpp v. 1.9.0; Longranger Align\n v. DX 2.2.2.1; freebayes v. DX 19-07-11;\n gEVAL manual curation v. 2021-03-30; VGP\n assembly pipeline v. 1.5\nAssembly Name :: bCucCan1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 64.31x\nSequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_017976375.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/28/2023\n##Genome-Annotation-Data-END##
olfactory receptor 14J1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14A16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X1
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X2
purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
NDRG family member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
NDRG family member 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
NDRG family member 2, transcript variant X1
apurinic/apyrimidinic endodeoxyribonuclease 1; Derived by automated computational analysis using gene prediction method: Gnomon.
apurinic/apyrimidinic endodeoxyribonuclease 1, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
apurinic/apyrimidinic endodeoxyribonuclease 1, transcript variant X3
apurinic/apyrimidinic endodeoxyribonuclease 1, transcript variant X1
apurinic/apyrimidinic endodeoxyribonuclease 1, transcript variant X2
DNA-(apurinic or apyrimidinic site) endonuclease
O-sialoglycoprotein endopeptidase; Derived by automated computational analysis using gene prediction method: Gnomon.
O-sialoglycoprotein endopeptidase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
O-sialoglycoprotein endopeptidase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
tRNA N6-adenosine threonylcarbamoyltransferase isoform X1
tRNA N6-adenosine threonylcarbamoyltransferase isoform X2
telomerase associated protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850112; Derived by automated computational analysis using gene prediction method: Gnomon.
telomerase protein component 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
telomerase protein component 1-like, transcript variant X1
telomerase protein component 1-like, transcript variant X2
telomerase protein component 1-like isoform X1
telomerase protein component 1-like isoform X2
tetratricopeptide repeat domain 5; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein C; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein C, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
heterogeneous nuclear ribonucleoprotein C, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
heterogeneous nuclear ribonucleoproteins C1/C2 isoform X2
heterogeneous nuclear ribonucleoproteins C1/C2 isoform X1
uncharacterized LOC128850156; Derived by automated computational analysis using gene prediction method: Gnomon.
SPT16 homolog, facilitates chromatin remodeling subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
SPT16 homolog, facilitates chromatin remodeling subunit
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: FACT complex subunit SPT16
chromodomain helicase DNA binding protein 8; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain helicase DNA binding protein 8
chromodomain-helicase-DNA-binding protein 8
TOX high mobility group box family member 4; Derived by automated computational analysis using gene prediction method: Gnomon.
TOX high mobility group box family member 4
COORDINATES: polyA evidence [ECO:0006239]
methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit
N6-adenosine-methyltransferase catalytic subunit
spalt like transcription factor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850168; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850168, transcript variant X8
uncharacterized LOC128850168, transcript variant X12
uncharacterized LOC128850168, transcript variant X4
uncharacterized LOC128850168, transcript variant X10
uncharacterized LOC128850168, transcript variant X6
uncharacterized LOC128850168, transcript variant X1
uncharacterized LOC128850168, transcript variant X5
uncharacterized LOC128850168, transcript variant X14
uncharacterized LOC128850168, transcript variant X11
uncharacterized LOC128850168, transcript variant X7
uncharacterized LOC128850168, transcript variant X13
uncharacterized LOC128850168, transcript variant X9
uncharacterized LOC128850168, transcript variant X3
uncharacterized LOC128850168, transcript variant X16
uncharacterized LOC128850168, transcript variant X17
uncharacterized LOC128850168, transcript variant X2
uncharacterized LOC128850168, transcript variant X15
uncharacterized LOC128850168, transcript variant X18
uncharacterized LOC128850169; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850169, transcript variant X1
uncharacterized LOC128850169, transcript variant X3
uncharacterized LOC128850169, transcript variant X4
uncharacterized LOC128850169, transcript variant X2
uncharacterized LOC128850169, transcript variant X5
Ig heavy chain V region 5-84-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 272 Proteins
immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 692 Proteins
Ig heavy chain V region 914-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 698 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
Ig heavy chain V region 6.96-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 623 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 233 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 704 Proteins
immunoglobulin heavy variable 3-64D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
immunoglobulin heavy variable 3-64D-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 686 Proteins
Ig heavy chain V-A1 region BS-5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 718 Proteins
Ig heavy chain V-III region HPC76-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 167 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 701 Proteins
Ig mu chain C region-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Ig mu chain C region-like, transcript variant X3
uncharacterized LOC128850172; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850173; Derived by automated computational analysis using gene prediction method: Gnomon.
shematrin-like protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: shematrin-like protein 2
uncharacterized LOC128850171; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850171, transcript variant X1
uncharacterized LOC128850171, transcript variant X2
Ig gamma-3 chain C region-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850130; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphoenolpyruvate carboxykinase [GTP], mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphoenolpyruvate carboxykinase [GTP], mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
DDB1 and CUL4 associated factor 11; Derived by automated computational analysis using gene prediction method: Gnomon.
CKLF like MARVEL transmembrane domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
CKLF like MARVEL transmembrane domain containing 5
CKLF-like MARVEL transmembrane domain-containing protein 5
poly(A) binding protein nuclear 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
apoptotic chromatin condensation inducer 1; Derived by automated computational analysis using gene prediction method: Gnomon.
apoptotic chromatin condensation inducer 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus
uncharacterized LOC128850148; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850148, transcript variant X1
uncharacterized LOC128850148, transcript variant X2
solute carrier family 7 member 8; Derived by automated computational analysis using gene prediction method: Gnomon.
large neutral amino acids transporter small subunit 2
neuroguidin; Derived by automated computational analysis using gene prediction method: Gnomon.
protein arginine methyltransferase 5; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
LOW QUALITY PROTEIN: protein arginine N-methyltransferase 5
RNA binding motif protein 23; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA binding motif protein 23, transcript variant X2
RNA binding motif protein 23, transcript variant X3
RNA binding motif protein 23, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
RNA binding motif protein 23, transcript variant X4
probable RNA-binding protein 23 isoform X2
probable RNA-binding protein 23 isoform X3
probable RNA-binding protein 23 isoform X1
probable RNA-binding protein 23 isoform X4
uncharacterized LOC128850150; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850150, transcript variant X3
uncharacterized LOC128850150, transcript variant X2
uncharacterized LOC128850150, transcript variant X4
uncharacterized LOC128850150, transcript variant X1
uncharacterized protein LOC128850150 isoform X3
uncharacterized protein LOC128850150 isoform X1
uncharacterized protein LOC128850150 isoform X2
proteasome 20S subunit beta 5; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: proteasome subunit beta type-5
ring finger protein 212B; Derived by automated computational analysis using gene prediction method: Gnomon.
matrix metalloproteinase-14-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 7 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 7 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: matrix metalloproteinase-14-like
thiamine triphosphatase; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial ribosomal protein L52; Derived by automated computational analysis using gene prediction method: Gnomon.
39S ribosomal protein L52, mitochondrial
OXA1L mitochondrial inner membrane protein; Derived by automated computational analysis using gene prediction method: Gnomon.
OXA1L mitochondrial inner membrane protein
mitochondrial inner membrane protein OXA1L
E3 ubiquitin-protein ligase RNF31-like; Derived by automated computational analysis using gene prediction method: Gnomon.
interferon regulatory factor 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
meiotic recombination protein REC8 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
meiotic recombination protein REC8 homolog, transcript variant X1
meiotic recombination protein REC8 homolog, transcript variant X3
meiotic recombination protein REC8 homolog, transcript variant X2
meiotic recombination protein REC8 homolog, transcript variant X4
meiotic recombination protein REC8 homolog
importin-4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850137; Derived by automated computational analysis using gene prediction method: Gnomon.
NEDD8; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
solute carrier family 12 member 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
H/ACA ribonucleoprotein complex subunit 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
H/ACA ribonucleoprotein complex subunit 3-like
nucleolar protein 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
geranylgeranyl transferase type-2 subunit alpha-like; Derived by automated computational analysis using gene prediction method: Gnomon.
geranylgeranyl transferase type-2 subunit alpha-like, transcript variant X1
geranylgeranyl transferase type-2 subunit alpha-like, transcript variant X2
geranylgeranyl transferase type-2 subunit alpha-like isoform X1
geranylgeranyl transferase type-2 subunit alpha-like isoform X2
protein-glutamine gamma-glutamyltransferase K-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein-glutamine gamma-glutamyltransferase K-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
LOW QUALITY PROTEIN: protein-glutamine gamma-glutamyltransferase K-like
mitochondrial inner membrane protein OXA1L-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial inner membrane protein OXA1L-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF31-like
meiotic recombination protein REC8 homolog isoform X2
meiotic recombination protein REC8 homolog isoform X1
uncharacterized LOC128850181; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850180; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850180, transcript variant X1
uncharacterized LOC128850180, transcript variant X2
uncharacterized LOC128850180, transcript variant X3
NEDD8-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
H/ACA ribonucleoprotein complex subunit 3; Derived by automated computational analysis using gene prediction method: Gnomon.
H/ACA ribonucleoprotein complex subunit 3, transcript variant X2
H/ACA ribonucleoprotein complex subunit 3 isoform X2
H/ACA ribonucleoprotein complex subunit 3, transcript variant X1
geranylgeranyl transferase type-2 subunit alpha-like
protein-glutamine gamma-glutamyltransferase K; Derived by automated computational analysis using gene prediction method: Gnomon.
protein-glutamine gamma-glutamyltransferase K
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins