Cuculus canorus isolate bCucCan1 chromosome 38, bCucCan1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Cuculus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM030674.1.\nAssembly name: bCucCan1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/04/15. The original whole-genome shotgun project has the\naccession JAGIYT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 30-MAR-2021\nAssembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX\n 8.0.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v.\n 0.3.2; pbgcpp v. 1.9.0; Longranger Align\n v. DX 2.2.2.1; freebayes v. DX 19-07-11;\n gEVAL manual curation v. 2021-03-30; VGP\n assembly pipeline v. 1.5\nAssembly Name :: bCucCan1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 64.31x\nSequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_017976375.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/28/2023\n##Genome-Annotation-Data-END##
RUS family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon.
ring finger protein 40; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
Snf2 related CREBBP activator protein; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
shematrin-like protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 3 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: shematrin-like protein 1
protein phosphatase 4 catalytic subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins
serine/threonine-protein phosphatase 4 catalytic subunit
aldolase, fructose-bisphosphate A; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
collagen alpha-2(I) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850087; Derived by automated computational analysis using gene prediction method: Gnomon.
armadillo repeat containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
cytochrome c oxidase subunit 6A, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome c oxidase subunit 6A, mitochondrial
integrin subunit alpha D; Derived by automated computational analysis using gene prediction method: Gnomon.
integrin subunit alpha D, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
integrin subunit alpha D, transcript variant X1
integrin subunit alpha D, transcript variant X3
integrin subunit alpha D, transcript variant X5
integrin subunit alpha D, transcript variant X4
translational activator of cytochrome c oxidase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
translational activator of cytochrome c oxidase 1, transcript variant X1
translational activator of cytochrome c oxidase 1, transcript variant X3
translational activator of cytochrome c oxidase 1, transcript variant X4
translational activator of cytochrome c oxidase 1, transcript variant X2
translational activator of cytochrome c oxidase 1 isoform X1
translational activator of cytochrome c oxidase 1 isoform X2
translational activator of cytochrome c oxidase 1 isoform X3
eukaryotic translation initiation factor 3 subunit C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit C-like
integrin subunit alpha L; Derived by automated computational analysis using gene prediction method: Gnomon.
integrin subunit alpha L, transcript variant X1
integrin subunit alpha L, transcript variant X2
integrin subunit alpha L, transcript variant X3
SLX1 homolog A, structure-specific endonuclease subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
SLX1 homolog A, structure-specific endonuclease subunit
structure-specific endonuclease subunit SLX1
SAGA complex associated factor 29; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
CLN3 lysosomal/endosomal transmembrane protein, battenin; Derived by automated computational analysis using gene prediction method: Gnomon.
CLN3 lysosomal/endosomal transmembrane protein, battenin
proline dehydrogenase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
proline dehydrogenase 2, transcript variant X2
proline dehydrogenase 2, transcript variant X1
uncharacterized LOC128850099; Derived by automated computational analysis using gene prediction method: Gnomon.
transforming growth factor beta regulator 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transforming growth factor beta regulator 1
uncharacterized LOC128850069; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128850069
uncharacterized LOC128850094; Derived by automated computational analysis using gene prediction method: Gnomon.
mucin-12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7; Derived by automated computational analysis using gene prediction method: Gnomon.
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7, transcript variant X1
3 beta-hydroxysteroid dehydrogenase type 7 isoform X2
3 beta-hydroxysteroid dehydrogenase type 7 isoform X1
uncharacterized LOC128850081; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850070; Derived by automated computational analysis using gene prediction method: Gnomon.
serine protease 53-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
vitamin K epoxide reductase complex subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
vitamin K epoxide reductase complex subunit 1
branched chain keto acid dehydrogenase kinase; Derived by automated computational analysis using gene prediction method: Gnomon.
branched chain keto acid dehydrogenase kinase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial
uncharacterized LOC128850090; Derived by automated computational analysis using gene prediction method: Gnomon.
FUS RNA binding protein; Derived by automated computational analysis using gene prediction method: Gnomon.
serine protease 33-like; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine acetyltransferase 8; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850086; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850085; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850085, transcript variant X2
uncharacterized LOC128850085, transcript variant X1
syntaxin-1B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
mitogen-activated protein kinase 7; Derived by automated computational analysis using gene prediction method: Gnomon.
mitogen-activated protein kinase 7, transcript variant X1
mitogen-activated protein kinase 7, transcript variant X2
mitogen-activated protein kinase 7, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
mitogen-activated protein kinase 7, transcript variant X3
mitogen-activated protein kinase 7 isoform X1
mitogen-activated protein kinase 7 isoform X2
SET domain containing 1A, histone lysine methyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
SET domain containing 1A, histone lysine methyltransferase
histone-lysine N-methyltransferase SETD1A
uncharacterized LOC128850105; Derived by automated computational analysis using gene prediction method: Gnomon.
F-box and leucine rich repeat protein 19; Derived by automated computational analysis using gene prediction method: Gnomon.
F-box and leucine rich repeat protein 19
TBC1 domain family member 10B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
CD2 antigen cytoplasmic tail-binding protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
CD2 antigen cytoplasmic tail-binding protein 2-like
uncharacterized LOC128850088; Derived by automated computational analysis using gene prediction method: Gnomon.
THO complex subunit 6; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Tu translation elongation factor, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
Tu translation elongation factor, mitochondrial, transcript variant X1
Tu translation elongation factor, mitochondrial, transcript variant X2
elongation factor Tu, mitochondrial isoform X1
elongation factor Tu, mitochondrial isoform X2
ataxin 2 like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ataxin-2-like protein
SH2B adaptor protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SH2B adaptor protein 1, transcript variant X1
SH2B adaptor protein 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins
sarcoplasmic/endoplasmic reticulum calcium ATPase 1
SPNS lysolipid transporter 1, lysophospholipid; Derived by automated computational analysis using gene prediction method: Gnomon.
SPNS lysolipid transporter 1, lysophospholipid, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
quinolinate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
nicotinate-nucleotide pyrophosphorylase [carboxylating]
uncharacterized LOC128850064; Derived by automated computational analysis using gene prediction method: Gnomon.
myosin light chain 11; Derived by automated computational analysis using gene prediction method: Gnomon.
SPNS lysolipid transporter 1, lysophospholipid, transcript variant X4
SPNS lysolipid transporter 1, lysophospholipid, transcript variant X2
SPNS lysolipid transporter 1, lysophospholipid, transcript variant X1
linker for activation of T cells; Derived by automated computational analysis using gene prediction method: Gnomon.
linker for activation of T cells, transcript variant X2
linker for activation of T cells, transcript variant X4
linker for activation of T cells, transcript variant X1
linker for activation of T cells, transcript variant X5
linker for activation of T cells, transcript variant X3
linker for activation of T-cells family member 1 isoform X1
linker for activation of T-cells family member 1 isoform X2
linker for activation of T-cells family member 1 isoform X3
linker for activation of T-cells family member 1 isoform X4
serine protease 27-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
PAXIP1 associated glutamate rich protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
PAXIP1 associated glutamate rich protein 1
PAXIP1-associated glutamate-rich protein 1
HIRA interacting protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
TAO kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
serine/threonine-protein kinase TAO2 isoform X3
serine/threonine-protein kinase TAO2 isoform X5
serine/threonine-protein kinase TAO2 isoform X4
serine/threonine-protein kinase TAO2 isoform X6
serine/threonine-protein kinase TAO2 isoform X1
serine/threonine-protein kinase TAO2 isoform X2
CDP-diacylglycerol--inositol 3-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
CDP-diacylglycerol--inositol 3-phosphatidyltransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
microfibril-associated glycoprotein 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
microfibril-associated glycoprotein 4-like
serine/arginine repetitive matrix protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/arginine repetitive matrix protein 2, transcript variant X1
serine/arginine repetitive matrix protein 2, transcript variant X2
serine/arginine repetitive matrix protein 2, transcript variant X3
serine/arginine repetitive matrix protein 2, transcript variant X4
serine/arginine repetitive matrix protein 2, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
serine/arginine repetitive matrix protein 2, transcript variant X8
serine/arginine repetitive matrix protein 2, transcript variant X5
serine/arginine repetitive matrix protein 2, transcript variant X7
serine/arginine repetitive matrix protein 2 isoform X1
serine/arginine repetitive matrix protein 2 isoform X2
serine/arginine repetitive matrix protein 2 isoform X3
serine/arginine repetitive matrix protein 2 isoform X4
elongin B; Derived by automated computational analysis using gene prediction method: Gnomon.
INO80 complex subunit E; Derived by automated computational analysis using gene prediction method: Gnomon.
INO80 complex subunit E, transcript variant X2
INO80 complex subunit E, transcript variant X1
INO80 complex subunit E, transcript variant X3
MYC associated zinc finger protein; Derived by automated computational analysis using gene prediction method: Gnomon.
MYC associated zinc finger protein, transcript variant X2
MYC associated zinc finger protein, transcript variant X4
MYC associated zinc finger protein, transcript variant X5
myc-associated zinc finger protein isoform X4
myc-associated zinc finger protein isoform X3
MYC associated zinc finger protein, transcript variant X3
MYC associated zinc finger protein, transcript variant X1
myc-associated zinc finger protein isoform X2
myc-associated zinc finger protein isoform X1