Cuculus canorus isolate bCucCan1 chromosome 36, bCucCan1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Cuculus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM030672.1.\nAssembly name: bCucCan1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/04/15. The original whole-genome shotgun project has the\naccession JAGIYT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 30-MAR-2021\nAssembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX\n 8.0.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v.\n 0.3.2; pbgcpp v. 1.9.0; Longranger Align\n v. DX 2.2.2.1; freebayes v. DX 19-07-11;\n gEVAL manual curation v. 2021-03-30; VGP\n assembly pipeline v. 1.5\nAssembly Name :: bCucCan1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 64.31x\nSequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_017976375.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/28/2023\n##Genome-Annotation-Data-END##
actin-like protein 6B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
methylphosphate capping enzyme; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
7SK snRNA methylphosphate capping enzyme
protein phosphatase 1 regulatory subunit 35-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase 1 regulatory subunit 35-like
neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1
neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1
leucine rich repeats and calponin homology domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeats and calponin homology domain containing 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
leucine-rich repeat and calponin homology domain-containing protein 4
2-acylglycerol O-acyltransferase 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
VGF nerve growth factor inducible; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 1 subunit sigma 1; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 1 subunit sigma 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
adaptor related protein complex 1 subunit sigma 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
AP-1 complex subunit sigma-1A isoform X1
AP-1 complex subunit sigma-1A isoform X2
adenosine deaminase tRNA specific 3; Derived by automated computational analysis using gene prediction method: Gnomon.
probable inactive tRNA-specific adenosine deaminase-like protein 3
claudin-15-like; Derived by automated computational analysis using gene prediction method: Gnomon.
fission, mitochondrial 1; Derived by automated computational analysis using gene prediction method: Gnomon.
fission, mitochondrial 1, transcript variant X1
fission, mitochondrial 1, transcript variant X3
mitochondrial fission 1 protein isoform X1
mitochondrial fission 1 protein isoform X3
fission, mitochondrial 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
mitochondrial fission 1 protein isoform X2
dentin sialophosphoprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128849955; Derived by automated computational analysis using gene prediction method: Gnomon.
polyunsaturated fatty acid lipoxygenase ALOX15B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
polyunsaturated fatty acid lipoxygenase ALOX15B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
phosphoribosylformylglycinamidine synthase; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphoribosylformylglycinamidine synthase
chromodomain helicase DNA binding protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain helicase DNA binding protein 3
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3
uncharacterized LOC128849971; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128849972; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome b5 domain-containing protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome b5 domain-containing protein 1, transcript variant X1
cytochrome b5 domain-containing protein 1, transcript variant X2
cytochrome b5 domain-containing protein 1
N-alpha-acetyltransferase 38, NatC auxiliary subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
N-alpha-acetyltransferase 38, NatC auxiliary subunit
lysine demethylase 6B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
lysine-specific demethylase 6B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128849995; Derived by automated computational analysis using gene prediction method: Gnomon.
ephrin B3; Derived by automated computational analysis using gene prediction method: Gnomon.
WD repeat containing antisense to TP53; Derived by automated computational analysis using gene prediction method: Gnomon.
WD repeat containing antisense to TP53, transcript variant X1
WD repeat containing antisense to TP53, transcript variant X2
telomerase Cajal body protein 1 isoform X2
telomerase Cajal body protein 1 isoform X1
profilin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
sperm associated antigen 7; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin-like protein KIF1C; Derived by automated computational analysis using gene prediction method: Gnomon.
ephrin type-B receptor 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 73 Proteins
serrate, RNA effector molecule; Derived by automated computational analysis using gene prediction method: Gnomon.
serrate, RNA effector molecule, transcript variant X1
serrate, RNA effector molecule, transcript variant X4
serrate, RNA effector molecule, transcript variant X2
serrate, RNA effector molecule, transcript variant X3
serrate, RNA effector molecule, transcript variant X5
serrate RNA effector molecule homolog isoform X1
serrate RNA effector molecule homolog isoform X4
serrate RNA effector molecule homolog isoform X2
serrate RNA effector molecule homolog isoform X3
serrate RNA effector molecule homolog isoform X5
transmembrane protein 256; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
neuroligin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
COP9 signalosome subunit 6; Derived by automated computational analysis using gene prediction method: Gnomon.
COP9 signalosome subunit 6, transcript variant X2
fibroblast growth factor 11-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
uncharacterized LOC128849996; Derived by automated computational analysis using gene prediction method: Gnomon.
cholinergic receptor nicotinic beta 1 subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
cholinergic receptor nicotinic beta 1 subunit
protein diaphanous homolog 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
discs large MAGUK scaffold protein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 62 Proteins
PHD finger protein 23; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
GABA type A receptor-associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins
gamma-aminobutyric acid receptor-associated protein
CTD nuclear envelope phosphatase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
small nuclear RNA activating complex polypeptide 2; Derived by automated computational analysis using gene prediction method: Gnomon.
small nuclear RNA activating complex polypeptide 2
snRNA-activating protein complex subunit 2
proline, glutamate and leucine rich protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
proline, glutamate and leucine rich protein 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: proline-, glutamic acid- and leucine-rich protein 1
mediator complex subunit 11; Derived by automated computational analysis using gene prediction method: Gnomon.
mediator complex subunit 11, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
mediator complex subunit 11, transcript variant X3
mediator of RNA polymerase II transcription subunit 11
mediator complex subunit 11, transcript variant X1
COP9 signalosome subunit 6, transcript variant X1
COP9 signalosome complex subunit 6 isoform X1
COP9 signalosome complex subunit 6 isoform X2
minichromosome maintenance complex component 7; Derived by automated computational analysis using gene prediction method: Gnomon.
minichromosome maintenance complex component 7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
adaptor related protein complex 4 subunit mu 1; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 4 subunit mu 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: AP-4 complex subunit mu-1
stromal antigen 3; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: cohesin subunit SA-3
galactose-3-O-sulfotransferase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 14; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 14, transcript variant X1
trafficking protein particle complex subunit 14, transcript variant X2
trafficking protein particle complex subunit 14 isoform X1
trafficking protein particle complex subunit 14 isoform X2
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4; Derived by automated computational analysis using gene prediction method: Gnomon.
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
vitelline membrane outer layer 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
vitelline membrane outer layer 1 homolog
vitelline membrane outer layer protein 1 homolog
proteasome 20S subunit beta 6; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
solute carrier family 25 member 11; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial 2-oxoglutarate/malate carrier protein
RNA polymerase II subunit A; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA polymerase II subunit A, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
RNA polymerase II subunit A, transcript variant X2
DNA-directed RNA polymerase II subunit RPB1 isoform X1
DNA-directed RNA polymerase II subunit RPB1 isoform X2
zinc finger and BTB domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain-containing protein 4
G protein-coupled receptor kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
G protein-coupled receptor kinase 1, transcript variant X3
G protein-coupled receptor kinase 1, transcript variant X1
G protein-coupled receptor kinase 1, transcript variant X5
G protein-coupled receptor kinase 1, transcript variant X4
G protein-coupled receptor kinase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
ATPase Na+/K+ transporting subunit beta 2; Derived by automated computational analysis using gene prediction method: Gnomon.
ATPase Na+/K+ transporting subunit beta 2, transcript variant X1
ATPase Na+/K+ transporting subunit beta 2, transcript variant X2
ATPase Na+/K+ transporting subunit beta 2, transcript variant X3
ATPase Na+/K+ transporting subunit beta 2, transcript variant X4
sodium/potassium-transporting ATPase subunit beta-2 isoform X1
sodium/potassium-transporting ATPase subunit beta-2 isoform X2
sodium/potassium-transporting ATPase subunit beta-2 isoform X3
sodium/potassium-transporting ATPase subunit beta-2 isoform X4
tumor protein p53; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 16 member 13; Derived by automated computational analysis using gene prediction method: Gnomon.
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1, transcript variant X1
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1, transcript variant X2
arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X2
arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X1
neuralized E3 ubiquitin protein ligase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
neuralized E3 ubiquitin protein ligase 4
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: neuralized-like protein 4
eukaryotic translation initiation factor 5A; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 5A, transcript variant X3
G protein pathway suppressor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
G protein pathway suppressor 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
G protein pathway suppressor 2, transcript variant X1
G protein pathway suppressor 2 isoform X1
G protein pathway suppressor 2 isoform X2
eukaryotic translation initiation factor 5A, transcript variant X2
eukaryotic translation initiation factor 5A, transcript variant X1
eukaryotic translation initiation factor 5A-1
Y-box binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 2 member 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
solute carrier family 2, facilitated glucose transporter member 4
ribonuclease K; Derived by automated computational analysis using gene prediction method: Gnomon.
chromosome 36 C17orf49 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
chromosome 36 C17orf49 homolog, transcript variant X3
chromosome 36 C17orf49 homolog, transcript variant X1
chromosome 36 C17orf49 homolog, transcript variant X2
acetylcholinesterase (Cartwright blood group); Derived by automated computational analysis using gene prediction method: Gnomon.
acetylcholinesterase (Cartwright blood group)
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
mucin 17, cell surface associated; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 107; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 107, transcript variant X2
transmembrane protein 107, transcript variant X1
U8 small nucleolar RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00096
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC128850007; Derived by automated computational analysis using gene prediction method: Gnomon.
aurora kinase C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins
vesicle associated membrane protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3-like
zinc finger HIT-type containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger HIT domain-containing protein 1
retinal guanylyl cyclase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
retinal guanylyl cyclase 1, transcript variant X3
retinal guanylyl cyclase 1, transcript variant X1
retinal guanylyl cyclase 1, transcript variant X2
trafficking protein particle complex subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 1
metallo-beta-lactamase domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
metallo-beta-lactamase domain containing 1
metallo-beta-lactamase domain-containing protein 1
TATA-box binding protein associated factor 6; Derived by automated computational analysis using gene prediction method: Gnomon.
TATA-box binding protein associated factor 6
transcription initiation factor TFIID subunit 6
2-acylglycerol O-acyltransferase 2-A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
2-acylglycerol O-acyltransferase 2-A-like, transcript variant X3
2-acylglycerol O-acyltransferase 2-A-like, transcript variant X4
2-acylglycerol O-acyltransferase 2-A-like, transcript variant X5
2-acylglycerol O-acyltransferase 2-A-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
2-acylglycerol O-acyltransferase 2-A-like, transcript variant X2
2-acylglycerol O-acyltransferase 2-A-like isoform X1
2-acylglycerol O-acyltransferase 2-like isoform X4
2-acylglycerol O-acyltransferase 2-A-like isoform X2
2-acylglycerol O-acyltransferase 2-B-like isoform X3
2-acylglycerol O-acyltransferase 2-B-like isoform X5
uncharacterized LOC128850002; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850002, transcript variant X1
uncharacterized LOC128850002, transcript variant X2
uncharacterized LOC128850003; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128850003, transcript variant X1
uncharacterized LOC128850003, transcript variant X2