Cuculus canorus isolate bCucCan1 chromosome 35, bCucCan1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Cuculus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM030671.1.\nAssembly name: bCucCan1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/04/15. The original whole-genome shotgun project has the\naccession JAGIYT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 30-MAR-2021\nAssembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX\n 8.0.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v.\n 0.3.2; pbgcpp v. 1.9.0; Longranger Align\n v. DX 2.2.2.1; freebayes v. DX 19-07-11;\n gEVAL manual curation v. 2021-03-30; VGP\n assembly pipeline v. 1.5\nAssembly Name :: bCucCan1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 64.31x\nSequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_017976375.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/28/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC128849940; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128849924; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128849925; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128849926; Derived by automated computational analysis using gene prediction method: Gnomon.
BCL3 transcription coactivator; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
lipase E, hormone sensitive type; Derived by automated computational analysis using gene prediction method: Gnomon.
lipase E, hormone sensitive type, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
lipase E, hormone sensitive type, transcript variant X2
multiple EGF like domains 8; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: multiple epidermal growth factor-like domains protein 8
transmembrane protein 145; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 145, transcript variant X4
transmembrane protein 145, transcript variant X1
transmembrane protein 145, transcript variant X3
transmembrane protein 145, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
toll-like receptor 13; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
proline rich 19; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
CD79a molecule; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
B-cell antigen receptor complex-associated protein alpha chain isoform X2
B-cell antigen receptor complex-associated protein alpha chain isoform X1
Rho guanine nucleotide exchange factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Rho guanine nucleotide exchange factor 1, transcript variant X1
Rho guanine nucleotide exchange factor 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
Rho guanine nucleotide exchange factor 1, transcript variant X3
Rho guanine nucleotide exchange factor 1, transcript variant X4
rho guanine nucleotide exchange factor 1 isoform X1
rho guanine nucleotide exchange factor 1 isoform X2
rho guanine nucleotide exchange factor 1 isoform X3
rho guanine nucleotide exchange factor 1 isoform X4
ETS domain-containing transcription factor ERF-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ETS domain-containing transcription factor ERF-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Rab acceptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ATPase Na+/K+ transporting subunit alpha 3; Derived by automated computational analysis using gene prediction method: Gnomon.
ATPase Na+/K+ transporting subunit alpha 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 Proteins
ATPase Na+/K+ transporting subunit alpha 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins
sodium/potassium-transporting ATPase subunit alpha-3 isoform X2
sodium/potassium-transporting ATPase subunit alpha-3 isoform X1
glutamate ionotropic receptor kainate type subunit 5; Derived by automated computational analysis using gene prediction method: Gnomon.
glutamate ionotropic receptor kainate type subunit 5
glutamate receptor ionotropic, kainate 5
zinc finger protein 574; Derived by automated computational analysis using gene prediction method: Gnomon.
POU class 2 homeobox 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
POU domain, class 2, transcription factor 2
death effector domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
DNA-binding death effector domain-containing protein 2
ETS domain-containing transcription factor ERF-like, transcript variant X2
ETS domain-containing transcription factor ERF-like, transcript variant X1
ETS domain-containing transcription factor ERF-like isoform X2
ETS domain-containing transcription factor ERF-like isoform X1
capicua transcriptional repressor; Derived by automated computational analysis using gene prediction method: Gnomon.
ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
cell adhesion molecule 4; Derived by automated computational analysis using gene prediction method: Gnomon.
cell adhesion molecule 4, transcript variant X1
cell adhesion molecule 4, transcript variant X2
zinc finger protein 576-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 575; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 575, transcript variant X1
zinc finger protein 575, transcript variant X2
urokinase plasminogen activator surface receptor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
urokinase plasminogen activator surface receptor-like, transcript variant X1
urokinase plasminogen activator surface receptor-like, transcript variant X2
ly6/PLAUR domain-containing protein 3-like isoform X1
urokinase plasminogen activator surface receptor-like isoform X2
ETHE1 persulfide dioxygenase; Derived by automated computational analysis using gene prediction method: Gnomon.
ETHE1 persulfide dioxygenase, transcript variant X2
ETHE1 persulfide dioxygenase, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
ETHE1 persulfide dioxygenase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
persulfide dioxygenase ETHE1, mitochondrial isoform X3
persulfide dioxygenase ETHE1, mitochondrial isoform X2
persulfide dioxygenase ETHE1, mitochondrial isoform X1
X-ray repair cross complementing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: DNA repair protein XRCC1
SMG9 nonsense mediated mRNA decay factor; Derived by automated computational analysis using gene prediction method: Gnomon.
SMG9 nonsense mediated mRNA decay factor
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
nonsense-mediated mRNA decay factor SMG9
kallikrein-14-like; Derived by automated computational analysis using gene prediction method: Gnomon.
kallikrein-14-like, transcript variant X1
kallikrein-14-like, transcript variant X2
kallikrein-6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 81 Proteins
kallikrein-14-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 83 Proteins
kallikrein-14-like, transcript variant X5
kallikrein-14-like, transcript variant X3
kallikrein-14-like, transcript variant X6
kallikrein-8-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 59 Proteins
cytochrome c oxidase subunit 6B1; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome c oxidase subunit 6B1, transcript variant X1
cytochrome c oxidase subunit 6B1, transcript variant X2
cytochrome c oxidase subunit 6B1, transcript variant X3
lin-37 DREAM MuvB core complex component; Derived by automated computational analysis using gene prediction method: Gnomon.
lin-37 DREAM MuvB core complex component
serine/arginine repetitive matrix protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/arginine repetitive matrix protein 1-like, transcript variant X2
serine/arginine repetitive matrix protein 1-like, transcript variant X1
serine/arginine repetitive matrix protein 1-like isoform X2
serine/arginine repetitive matrix protein 1-like isoform X1
sushi, nidogen and EGF-like domain-containing protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
sushi, nidogen and EGF-like domain-containing protein 1
IgGFc-binding protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
IgGFc-binding protein-like, transcript variant X2
IgGFc-binding protein-like, transcript variant X1
sushi, nidogen and EGF-like domain-containing protein 1, transcript variant X2
sushi, nidogen and EGF-like domain-containing protein 1, transcript variant X1
sushi, nidogen and EGF-like domain-containing protein 1 isoform X2
sushi, nidogen and EGF-like domain-containing protein 1 isoform X1
uncharacterized LOC128849929; Derived by automated computational analysis using gene prediction method: Gnomon.
fibrillarin; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
synaptophysin-like protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
cytosolic thiouridylase subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA binding motif protein 42; Derived by automated computational analysis using gene prediction method: Gnomon.
HAUS augmin like complex subunit 5; Derived by automated computational analysis using gene prediction method: Gnomon.
HAUS augmin like complex subunit 5, transcript variant X5
HAUS augmin like complex subunit 5, transcript variant X1
HAUS augmin like complex subunit 5, transcript variant X3
HAUS augmin like complex subunit 5, transcript variant X2
HAUS augmin like complex subunit 5, transcript variant X4
HAUS augmin-like complex subunit 5 isoform X5
HAUS augmin-like complex subunit 5 isoform X1
HAUS augmin-like complex subunit 5 isoform X3
HAUS augmin-like complex subunit 5 isoform X4
HAUS augmin-like complex subunit 5 isoform X2
FXYD domain-containing ion transport regulator 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
FXYD domain-containing ion transport regulator 3-like, transcript variant X2
FXYD domain-containing ion transport regulator 3-like, transcript variant X1
FXYD domain-containing ion transport regulator 3-like
leucine-rich repeat LGI family member 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat LGI family member 4-like
FXYD domain containing ion transport regulator 1; Derived by automated computational analysis using gene prediction method: Gnomon.
FXYD domain containing ion transport regulator 1, transcript variant X1
FXYD domain containing ion transport regulator 1, transcript variant X2
FXYD domain containing ion transport regulator 7; Derived by automated computational analysis using gene prediction method: Gnomon.
FXYD domain containing ion transport regulator 7
FXYD domain-containing ion transport regulator 7
uncharacterized LOC128849912; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128849912, transcript variant X7
uncharacterized LOC128849912, transcript variant X3
uncharacterized LOC128849912, transcript variant X6
uncharacterized LOC128849912, transcript variant X4
uncharacterized LOC128849912, transcript variant X2
uncharacterized LOC128849912, transcript variant X5
uncharacterized LOC128849912, transcript variant X1
uncharacterized protein LOC128849912 isoform X6
uncharacterized protein LOC128849912 isoform X4
uncharacterized protein LOC128849912 isoform X2
uncharacterized protein LOC128849912 isoform X5
uncharacterized protein LOC128849912 isoform X1
uncharacterized protein LOC128849912 isoform X7
uncharacterized protein LOC128849912 isoform X3
sodium voltage-gated channel beta subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
sodium voltage-gated channel beta subunit 1
proteasome 26S subunit, ATPase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
uncharacterized LOC128849942; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128849943; Derived by automated computational analysis using gene prediction method: Gnomon.
Schwann cell myelin protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Schwann cell myelin protein-like, transcript variant X2
Schwann cell myelin protein-like, transcript variant X1
Schwann cell myelin protein-like isoform X2
Schwann cell myelin protein-like isoform X1
lipolysis stimulated lipoprotein receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
lipolysis stimulated lipoprotein receptor, transcript variant X1
lipolysis stimulated lipoprotein receptor, transcript variant X2
lipolysis stimulated lipoprotein receptor, transcript variant X4
lipolysis stimulated lipoprotein receptor, transcript variant X6
lipolysis stimulated lipoprotein receptor, transcript variant X3
lipolysis stimulated lipoprotein receptor, transcript variant X5
lipolysis-stimulated lipoprotein receptor isoform X1
lipolysis-stimulated lipoprotein receptor isoform X2
lipolysis-stimulated lipoprotein receptor isoform X4
lipolysis-stimulated lipoprotein receptor isoform X6
lipolysis-stimulated lipoprotein receptor isoform X3
lipolysis-stimulated lipoprotein receptor isoform X5
transmembrane protein 147; Derived by automated computational analysis using gene prediction method: Gnomon.
ATPase H+/K+ transporting subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins
potassium-transporting ATPase alpha chain 1
lysine methyltransferase 2B; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2B
nephrin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
apolipoprotein C-II-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128849948; Derived by automated computational analysis using gene prediction method: Gnomon.
apolipoprotein E-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial import receptor subunit TOM40 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial import receptor subunit TOM40 homolog
upstream stimulatory factor 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
hepcidin antimicrobial peptide; Derived by automated computational analysis using gene prediction method: Gnomon.
electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Gnomon.
electron transfer flavoprotein subunit beta
protein phosphatase 2 scaffold subunit Aalpha; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase 2 scaffold subunit Aalpha
serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform