Phaeodactylum tricornutum CCAP 1055/1 chromosome 29, whole genome shotgun sequence.
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum.
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Submitted (15-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (12-AUG-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM000631.\nURL -- http://www.jgi.doe.gov/phaeodactylum\nJGI Project ID: 3634397\nContacts: Chris Bowler (cbowler@biologie.ens.fr)\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nThe clone of P. tricornutum that was sequenced is CCAP1055/1 and is\navailable from the Culture collection of Algae and Protozoa\n(http://www.ccap.ac.uk). This clone represents a monoclonal culture\nderived from a fusiform cell in May 2003 from strain CCCP632, which\nwas originally isolated in 1956 off Blackpool (U.K.). It has been\nmaintained in culture continuously in F/2 medium.\nAnnotation was done by the JGI Annotation team and the Diatom\nConsortium.\nChromosomes 3 and 11 are complete and present in GenBank records\nCP001142 and CP001141, respectively.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAnnotated scaffolds were added in December 2008.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
Possibly hydrolyzes terminal, non-reducing beta-D-glucose residues of beta-glucosides; glycosyl hydrolase family 1
nineth step in heme biosynthesis; N terminus contains ER signal peptide (SignalP score = 0.999); putatively chloroplast targeted
Glucose-6-phosphate isomerase (GPI), contains bipartite plastid targeting presequence with conserved motif at signal peptide cleavage site
Catalysis of the reaction: UDP-sulfoquinovose + 1,2-diacylglycerol = sulfoquinovosyldiacylglycerol + UDP.
putative B-type CDK involved in G2-M transition
Glutaredoxin, probably cytosolic; probably glutaredoxin
Homologous to a Chlamydomonas protein involved in cell wall regeneration. This gene is highly expressed under conditions of nitrogen limitation - especially while growing on urea as a sole N source.
Rab-type small GTPAse, ortholog of T. pseudonana TPS_106973
Two component sensor with HATPase and Response Regulator domains
two component sensor, Histidine Kinase, Response Regulator
Probable enoyl-CoA hydratase catalyses (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O Also found in fatty acid elongation in mitochondria, fatty acid metabolism Valine, leucine and isoleucine degradation, Lysine degradation, Tryptophan metabolism, beta-Alanine metabolism, Benzoate degradation via CoA ligation, Propanoate metabolism, Butanoate metabolism, Limonene and pinene degradation, Caprolactam degradation
pyrophosphate-dependent phosphofructose kinase
Has EST support. present: 1 || present: 1
another Phosphofructokinase (Protein ID 50424, chr_29:319602-321646) is encoded directly downstream of this gene in the same orientation
Phosphofructokinase, no targeting signal predicted, translation start unclear, compare to Protein ID 56524, Phatr2/chr_29:319602-321646, another Phosphofructokinase (Protein ID 51286, chr_29:317053-319205) is encoded directly upstream of this gene in the same orientation