Phaeodactylum tricornutum CCAP 1055/1 chromosome 27, whole genome shotgun sequence.
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum.
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Submitted (15-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (12-AUG-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM000629.\nURL -- http://www.jgi.doe.gov/phaeodactylum\nJGI Project ID: 3634397\nContacts: Chris Bowler (cbowler@biologie.ens.fr)\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nThe clone of P. tricornutum that was sequenced is CCAP1055/1 and is\navailable from the Culture collection of Algae and Protozoa\n(http://www.ccap.ac.uk). This clone represents a monoclonal culture\nderived from a fusiform cell in May 2003 from strain CCCP632, which\nwas originally isolated in 1956 off Blackpool (U.K.). It has been\nmaintained in culture continuously in F/2 medium.\nAnnotation was done by the JGI Annotation team and the Diatom\nConsortium.\nChromosomes 3 and 11 are complete and present in GenBank records\nCP001142 and CP001141, respectively.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAnnotated scaffolds were added in December 2008.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
3'-5'-exoribonuclease activity functions in RNA processing
Has EST support; Alternative splicing variant 1
CYP97C1; gene encoding a cytochrome P450 protein known for hydroxylation of epsilon-carotene for the formation of lutein.; Alternative splicing variant 1
LUT1-1 (also called CYP97C1); gene encoding a cytochrome P450 protein known for hydroxylation of epsilon-carotene for the formation of lutein but in diatoms possibly involved in hydroxylation beta-carotene.; CYP97C1-1; Alternative splicing variant 2
Presumably involved in lytic vacuolar trafficking, contains Microtuble Interacting and Trafficking (MIT) and ATPase domains.
excision repair cross-complementing rodent repair deficiency, complementation group 4
Probably involved in Nucleotide Excision Repair (NER) as subunit of the ERCC1-ERCC4 complex with endonuclease activity, associated with Xeroderma pigmentosum group F disease in human
Probable enoyl-CoA hydratase catalyses (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O Also found in fatty acid elongation in mitochondria, fatty acid metabolism Valine, leucine and isoleucine degradation, Lysine degradation, Tryptophan metabolism, beta-Alanine metabolism, Benzoate degradation via CoA ligation, Propanoate metabolism, Butanoate metabolism, Limonene and pinene degradation, Caprolactam degradation
Calcium-binding EF-hand protein, with 3 HF domain
Catalyzes the interconversion of D-glucose 6-phosphate and alpha-D-glucose 1-phosphate.
Calcium-binding EF-hand protein, with 3 HF domains
DNA polymerase zeta appears to be involved in the bypass of damage during DNA replication
This PAP fibrillin has a signal peptide predicted. proposed cleavage site is TLC-FH. Putative transit peptide is ChloroP positive and has serins. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. This is observed under different kind of stresses (e.g. light stress).
chitinase chitin binding glycoside hydrolase family 1
Chitinase with 5' signal peptide, multiple chitin binding domains, and a glycoside hydrolase family 18 domain. Amino acid translation has chitinase active site. Similar to Thaps model 3' end, EST support at 5' end.
DNA polymerase epsilon catalytic subunit that participates with PCNA in late in S phase DNA replication
Similar to bacterial and plastidic nucleotide transporters (NTTs)
3R-hydroxyacyl-[acyl carrier protein] dehydrase
Subunit of fatty acid synthase. Dehydrates 3R-hydroxyacyl-[acyl carrier protein] intermediates to trans-2,3-enoyl-[acyl carrier protein] intermediates in saturated fatty acid biosynthesis. Probably plastid targetd via bipartite targeting sequence. TargetP only detects intitial secretory signal.
probable Dihydrolipoamide acetyltransferase Pyruvate metabolism & glycolysis.
Similar to homeobox containing transcription factors