Phaeodactylum tricornutum CCAP 1055/1 chromosome 26, whole genome shotgun sequence.
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum.
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Submitted (15-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (12-AUG-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM000628.\nURL -- http://www.jgi.doe.gov/phaeodactylum\nJGI Project ID: 3634397\nContacts: Chris Bowler (cbowler@biologie.ens.fr)\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nThe clone of P. tricornutum that was sequenced is CCAP1055/1 and is\navailable from the Culture collection of Algae and Protozoa\n(http://www.ccap.ac.uk). This clone represents a monoclonal culture\nderived from a fusiform cell in May 2003 from strain CCCP632, which\nwas originally isolated in 1956 off Blackpool (U.K.). It has been\nmaintained in culture continuously in F/2 medium.\nAnnotation was done by the JGI Annotation team and the Diatom\nConsortium.\nChromosomes 3 and 11 are complete and present in GenBank records\nCP001142 and CP001141, respectively.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAnnotated scaffolds were added in December 2008.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
Ran-type small GTPase, ortholog of T. pseudonana TPS_111168
Hypothetical protein. Appears to be a member of the Multi Antimicrobial Extrusion (MATE) family which functions as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes.
Probable Propionyl-CoA carboxylase. A biotinyl-protein. Also carboxylates butanoyl-CoA and catalyses transcarboxylation. Catalyses as follows ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA Involved in valine, leucine and isoleucine degradation Propanoate metabolism
3-oxoacyl-[acyl-carrier-protein] synthase
Catalyzes condensation reactions of fatty acid synthesis by the addition of two carbons from malonyl-ACP to an acyl acceptor. May be specific for elongation of medium-chain fatty acids (10 to 16 or 18 carbons).; Beta-ketoacyl-ACP synthase I; KAS I
This gene is involved in photosynthetic electron transport. A signal and transit peptide (cTP) is encoded at the 5'end of this gene. The predicted cleavage site is GFA-FV. EST support
unknown function; contains Calcium-binding EF-hand; unknownn protein
Similar to homeobox containing transcription factors
Gene of unknown function, contains an ankyrin repeat near the c-terminus. There is a reliable signal peptide predicted and the gene is highly expressed under conditions of nitrogen limitation.; Pt_51089, Ankyrin repeat containing gene of unknownn function
first step in heme synthesis, or involved in proteosyntesis; no targeting presequences detected, putative cytosolic location; Glutamate-tRNA ligase
Has similarity to fatty acid desaturases, contains three 'histinde box' motifs. membrane-bound.
Homologous to rpl20 in the chloroplast genome of C. reinhardtii
unknown function; weak similarity to Peptidoglycan-binding LysM precursor; secretory pathway
protein fucoxanthin chlorophyll a/c protein