Phaeodactylum tricornutum CCAP 1055/1 chromosome 24, whole genome shotgun sequence.
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum.
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Submitted (15-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (12-AUG-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM000626.\nURL -- http://www.jgi.doe.gov/phaeodactylum\nJGI Project ID: 3634397\nContacts: Chris Bowler (cbowler@biologie.ens.fr)\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nThe clone of P. tricornutum that was sequenced is CCAP1055/1 and is\navailable from the Culture collection of Algae and Protozoa\n(http://www.ccap.ac.uk). This clone represents a monoclonal culture\nderived from a fusiform cell in May 2003 from strain CCCP632, which\nwas originally isolated in 1956 off Blackpool (U.K.). It has been\nmaintained in culture continuously in F/2 medium.\nAnnotation was done by the JGI Annotation team and the Diatom\nConsortium.\nChromosomes 3 and 11 are complete and present in GenBank records\nCP001142 and CP001141, respectively.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAnnotated scaffolds were added in December 2008.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
SMC proteins family involved in structural maintenance of chromosome. Highly closed to the Thalassiosira prtein thaps1 110427
hypothetical protein containing a v-SNARE domain, some similarity to plant vesicle transport involved protein VTI12
unknown function; Calcium-binding EF-hand; secretory pathway; unknownn protein
putative role in signal transduction; contains PDZ/DHR/GLGF domain; weak similarity to Lactobacillus protein
dehydrogenase methylmalonate-semialdhyde dehydrogenase
Methylmalonate-semialdhyde dehydrogenase (acylating) localised in the mitochondria. Catalyzes 2-methyl-3-oxopronoate+CoA+NAD= propanoyl-CoA+CO2+NADH
phytoene desaturase 2; expressed gene with similarities to higher plant and green algae phytoene desaturases, possibly involved in carotenoid biosynthesis, chloroplast localised; phytoene dehydrogenase
Purine permease. Highly upregulated under nitrate depletion.; UAPA
Protein-L-isoaspartate O-methyltransferase domain-containing protein. Cytosolic. Many ESTs under nitrate depletion.
Hydrolyzes terminal, non-reducing beta-D-glucose residues of beta-glucosides; glycosyl hydrolase family 3
Putative heat shock factor. EST support but only slim sequence similarity to any known genes.
Similar to histone deacetylase 1 protein responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Also involved in p53 deacetylation which modulates its effect on cell growth and apoptosis
protein fucoxanthin chlorophyll a/c protein
Protein sequence identical to 29266 on Chr15
Followed by PID 51230-tandem duplication?
serine dehydratase. Cysteine, glycine, serine & threonine metabolism