Phaeodactylum tricornutum CCAP 1055/1 chromosome 16, whole genome shotgun sequence.
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum.
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Submitted (15-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (12-AUG-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM000618.\nURL -- http://www.jgi.doe.gov/phaeodactylum\nJGI Project ID: 3634397\nContacts: Chris Bowler (cbowler@biologie.ens.fr)\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nThe clone of P. tricornutum that was sequenced is CCAP1055/1 and is\navailable from the Culture collection of Algae and Protozoa\n(http://www.ccap.ac.uk). This clone represents a monoclonal culture\nderived from a fusiform cell in May 2003 from strain CCCP632, which\nwas originally isolated in 1956 off Blackpool (U.K.). It has been\nmaintained in culture continuously in F/2 medium.\nAnnotation was done by the JGI Annotation team and the Diatom\nConsortium.\nChromosomes 3 and 11 are complete and present in GenBank records\nCP001142 and CP001141, respectively.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAnnotated scaffolds were added in December 2008.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
unknown function; contains short motif of Flagellar basal body rod proteins; unknownn protein
contains a signal peptide, contains a tryptophan rich domain (TRD)
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase
biosynthesis of steroids (non-mevalonate pathway)
frustulin 2, cell wall assoicated protein, contains a signal peptide
groups with CRTISO in phylogenetic tree containing various PDS ZDS and CRTISO.; phytoene dehydrogenase-related protein
alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
Enzyme involved in N-glycan biosynthetic pathway
Proteins called plastoglobulins (PGLs) or PAP/fibrillins are associated with the stromal surface of plastoglobules. These proteins probably regulate the structure of plastoglobules and are highly abundant, especially in chromoplasts. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. Signal peptide is predicted. proposed cleavage site is VHA-WQ. Putative transit peptide has serins but is not ChloroP positive.
member of ZIP zinc transporter protein family; putative Zinc/iron permease
Involved in beta oxidation. During import of acyl groups for beta-oxidation, or export of acetate, catalyzes this reaction in mitochondrial membranes: acyl-CoA + carnitine <==> acyl-carnitine + CoA; Acyl-carnitine transferase, mitochondrial precursor
mannosyl-oligosaccharide alpha-1,2-mannosidase
Possibly catalyzes the hydrolysis of terminal 1,2-linked alpha-D-mannose residues in the oligosaccharide Man9-GlcNAc2.; glycosyl hydrolase family 47
14-3-3-like protein, used in intracellular signaling
DP2 is an E2F dimerization partner involved in G1-S transition
DP1 is an E2F dimerization partner involved in G1-S transition
putative SNARE subunit, distant similarity to yeast v-SNARE Vti1 and plant t-SNAREs NPSN11, NPSN12
Glycine decarboxylase P-protein. Also known as glycine dehydrogenase (decarboxylating) and glycine cleavage system P-protein (GCSP, GCVP). Catalyzes the formation of serine from two glycine with the consequent formation of CO2 and NH3. Part of the glycolate cycle (C2 cycle) in photorespiration.
structural protein of ubiquitin-protein ligases E3, homolog to plant cullins
putative soluble NSF attachment protein ortholog (alpha-SNAP)
copper-transporting ATPase, heavy metal transporting ATPase
Part of the TCA cycle: Isocitrate + NADP(+) = 2-oxoglutarate + CO(2) + NADPH. The model contains a mitochondrial targeting sequence according to targetP. Appears to be upregulated under conditions of nitrate depletion.
contains a signal peptide, contains Tryptophan rich domain (TRD)
Similar to the subunit A of the chromatin assembly factor 1 (CAF1) bringing newly synthesized histones H3 and H4 tetramer to replicating DNA
Has EST support; Alternative splicing variant 2
Has EST support; Alternative splicing variant 1
translation start unclear, compare to Protein ID 56521; Alternative splicing variant 2
translation start unclear, compare to Protein ID 48141; Alternative splicing variant 1
Caspase-like protease. Conserved catalytic Cys-His diad is identified.
mitochondrial transit peptide predicted at N-terminus
Kinesin-related motor protein, involved in microtubule-based motility
contains Leucine-rich repeats (LRRs) of ribonuclease inhibitor subtype, found in a variety of cytoplasmic, membrane and extracellular proteins; similarity to RAN GTPase activating protein; unknownn protein
phospholipid-transporting ATPase; P4 type
putative Sec23/Sec24 component of the Coat Protein vesicle transport complex COP II
delta 6 elongase, microsomal precursor. Involved in the biosynthesis of polyunsaturated fatty acids. 5 predicted transmembrane domains. Catalyzes conversion of acyl -CoAs such as alpha-linoleoyl-CoA or stearidonyl-CoA to eicosatrienoyl-CoA or eicosatetraenoyl-CoA via the addition of two carbons from malonyl CoA.
May catalyze the reaction: 6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate in the pentose phosphate pathway.
putative Rab GTPase:GTP Dissociation Inhibitor
unknown function; similarity to phycocyanin alpha subunit; unknownn protein
glyceraldehyde-3-phosphate dehydrogenase
cytosolic glyceraldehyde-3-phosphate dehydrogenase, GenBank Accession AF063805, recent duplication of Protein ID 51129, chr_16:730132-731560
hypothetical protein with heme peroxidase domain
Hypothetical protein, haem peroxidase domain, good EST support, haem peroxidases use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions, oxidative stress response
related to PDZ_CTP_protease; unknownn protein
cytosolic glyceraldehyde-3-phosphate dehydrogenase, GenBank Accession AF063805, recent duplication of Protein ID 51128, chr_16:704574-705999