Phaeodactylum tricornutum CCAP 1055/1 chromosome 15, whole genome shotgun sequence.
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum.
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Submitted (15-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (12-AUG-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM000617.\nURL -- http://www.jgi.doe.gov/phaeodactylum\nJGI Project ID: 3634397\nContacts: Chris Bowler (cbowler@biologie.ens.fr)\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nThe clone of P. tricornutum that was sequenced is CCAP1055/1 and is\navailable from the Culture collection of Algae and Protozoa\n(http://www.ccap.ac.uk). This clone represents a monoclonal culture\nderived from a fusiform cell in May 2003 from strain CCCP632, which\nwas originally isolated in 1956 off Blackpool (U.K.). It has been\nmaintained in culture continuously in F/2 medium.\nAnnotation was done by the JGI Annotation team and the Diatom\nConsortium.\nChromosomes 3 and 11 are complete and present in GenBank records\nCP001142 and CP001141, respectively.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAnnotated scaffolds were added in December 2008.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
Putative phospholipase C, shows strong EST support but little amino acid similarity to other organisms
unknown function; contains C-terminal domain similar to cellulose-binding region; secretory pathway; unknownn protein
Forms an outgroup of CRTISO clade in phylogenetic tree containing various PDS ZDS and CRTISO.
clathrin heavy chain, vesicle coat protein
udp-n-acetylglucosamine n-acetylglucosaminyltransferase
enzyme involved in glycosylation biosynthetic pathway
protein fucoxanthin chlorophyll a/c protein
Homologous to the clpP gene in the chloroplast genome of C. reinhardtii
Homologous to the atpA gene in the chloroplast genome of C. reinhardtii; Alternative splicing variant 2
PEP utilizing plastid enzyme. Signal and transit peptide is predicted.
Sigma (small) subunit of the AP3 complex, ortholog of T. pseudonana TPS_146955
a negative regulator of transcription by binding to MBD2 and recruiting HDACcontaining complexes
Expressed protein containing a ferric reductase domain. Strong evidence for a signal peptide. Cytochrome b561 homolog.
EST data supports either one bp mini-exon or noncanonical splicing of second intron, compare to Protein ID 56598
Possibly a G-protein, involved in cell signal transduction. The G-protein is activated when the alpha subunit exchanges GDP for GTP upon transmission of a signal via a receptor molecule. The beta and gamma subunits dissociate from the GTP-bound alpha subunit.
fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40, homolog to fungal UBI1 and UBI2
Nuclear protein cofactor of DNA polymerase delta in human, increasing the processivity of leading strand synthesis during DNA replication. PCNA is also involved in heterochromatin replication and damaged DNA repair, probably acting as a scaffold protein
replication protein a large 70 kD subunit
Probably involved in DNA replication and DNA Nucleotide Excision Repair (NER) damage recogntion step in association with Xeroderma pigmentosum group A (XPA) protein
groups with CRTISO in phylogenetic tree containing various PDS ZDS and CRTISO.; phytoene dehydrogenase-related protein
Rab-type small GTPase, ortholog of T. pseudonana TPS_125766
2-isopropylmalate synthase/homocitrate synthase; extension at the N terminus contains putative ER signal peptide (SignalP prediction score = 0.995); putatively chloroplast targeted; CoA-acetylating
Aspartate kinase () (AK) catalyzes the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine. Homoserine dehydrogenase () (HDh) catalyzes NAD-dependent reduction of aspartate beta-semialdehyde into homoserine. This reaction is the third step in a pathway leading from aspartate to homoserine. The latter participates in the biosynthesis of threonine and then isoleucine as well as in that of methioni; AK-HD 2; AK-HSDH 2
weak similarity to Kix domain of CBP (creb binding protein); putative role as transcriptional coactivator; unknownn protein
glyceraldehyde-3-phosphate dehydrogenase precursor
plastidic glyceraldehyde-3-phosphate dehydrogenase, GenBank Accession AF063803
PGP cleaves the phosphate group from P-glycolate in the C2 cycle (photorespiration)
protein-tyrosine-phosphatase cdc25 catalytic domain
Dehydrogenase-NAD. Close to malate/sulfolactate dehydrogenases
Probably catalyzes the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-ribose 5-phosphate + D-xylulose 5-phosphate
Protein sequence identical to 40604 on Chr24