Dioscorea cayenensis subsp. rotundata cultivar TDr96_F1 chromosome 27, TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta, whole genome shotgun sequence.
type: Entry
definition: Dioscorea cayenensis subsp. rotundata cultivar TDr96_F1 chromosome 27, TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta, whole genome shotgun sequence.
sequence version: NC_052497.1
sequence date: 2021-02-02
sequence: sequence
division: CON
label: NC_052497.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA695139
dblink: SAMD00039982
keyword: WGS
keyword: RefSeq
source: Dioscorea cayenensis subsp. rotundata (Guinea yam)
organism: Dioscorea cayenensis subsp. rotundata
taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Dioscoreales; Dioscoreaceae; Dioscorea.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nBLBR01000027.1.\nAssembly name: TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22 25.fasta\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Genetics and Breeding, Iwate\nBiotechnology Research Center on 2019/11/25. The original\nwhole-genome shotgun project has the accession BLBR00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Genetics and Breeding, Iwate Biotechnology\n Research Center\nAssembly Method :: flye v. 2.4.2; pilon v. 1.23; Purge\n Haplotigs v. 1.0.4; MSTmap\nAssembly Name :: TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22\n 25.fasta\nGenome Coverage :: 34x\nSequencing Technology :: Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Dioscorea cayenensis subsp.\n rotundata Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.5\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 121368
topology: linear
so has quality: SO_0000987
location: 1..121368
location: region:1-121368:1
RO_0002162: 55577

NC_052497
type: RefSeq
SIO_000068: refseq

PRJNA695139
type: BioProject
SIO_000068: bioproject

SAMD00039982
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121368:1
position: 121368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-121368:1:source
so part of: sequence
organism: Dioscorea cayenensis subsp. rotundata
mol type: genomic DNA
cultivar: TDr96_F1
sub species: rotundata
chromosome: 27
country: Japan:Iwate
collection date: 2016-06-01

55577
type: Taxonomy
SIO_000068: taxonomy

LOC120253255
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253255
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4523..6005
location: region:4523-6005:1
so has part: feature:4523-6005:1:exon
subclass of: SO_0000010

120253255
type: Gene
SIO_000068: ncbigene

position:4523:1
position: 4523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6005:1
position: 6005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4523-6005:1:exon

LOC120253255
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253255
product: VAN3-binding protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transcript id: XM_039261584.1
SIO_010081: LOC120253255
subclass of: SO_0000673
so part of: LOC120253255
location: join(4523..4528,4607..4681,4777..4845,4925..5285,5389..5499,5587..5694,5788..6005)
location: region:4523-6005:1
so has part: feature:4523-4528:1:exon
so has part: feature:4607-4681:1:exon
so has part: feature:4777-4845:1:exon
so has part: feature:4925-5285:1:exon
so has part: feature:5389-5499:1:exon
so has part: feature:5587-5694:1:exon
so has part: feature:5788-6005:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4523-4528:1:exon

position:4528:1
position: 4528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4607-4681:1:exon

position:4607:1
position: 4607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4681:1
position: 4681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4777-4845:1:exon

position:4777:1
position: 4777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4845:1
position: 4845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4925-5285:1:exon

position:4925:1
position: 4925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5285:1
position: 5285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5389-5499:1:exon

position:5389:1
position: 5389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5499:1
position: 5499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5587-5694:1:exon

position:5587:1
position: 5587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5694:1
position: 5694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5788-6005:1:exon

position:5788:1
position: 5788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC120253255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253255
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: VAN3-binding protein-like
translation: MEKPENQLKVEDEALSSIPQVKFDDMKSWLWLQQAIHPELDYDIGLRKKWFSLRITQHWKDMSIKKWIKEIKQKRKEKDRLKRAEVHAAISVARLSASLAAIAAENTVSNTINNSKENAVAAAAALIAKHCATVAETIGAPHDHLASEINNAIIATDANNLLTLTAAAATSLKGAATLKGIRPHDFDFGRCRSSLAKGEELIVHAMDGKWKIRLVSVVLNRDAKVILRMRKTSILMSLSNAHECVVYDMKTEMVDEEVINKDENSFYCVDMSTSDGKIELKIKDYVQFKKWSMTINQMLMLSTTFSAYELQFYRS
SIO_010081: LOC120253255
subclass of: SO_0000673
so part of: LOC120253255
location: join(4523..4528,4607..4681,4777..4845,4925..5285,5389..5499,5587..5694,5788..6005)
location: region:4523-6005:1
so has part: feature:4523-4528:1:exon
so has part: feature:4607-4681:1:exon
so has part: feature:4777-4845:1:exon
so has part: feature:4925-5285:1:exon
so has part: feature:5389-5499:1:exon
so has part: feature:5587-5694:1:exon
so has part: feature:5788-6005:1:exon

XP_039117518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4523-4528:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4607-4681:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4777-4845:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4925-5285:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5389-5499:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5587-5694:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5788-6005:1:exon

LOC120253241
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253241
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 16433..18377
location: region:16433-18377:1
so has part: feature:16433-18377:1:exon
subclass of: SO_0000010

120253241
type: Gene
SIO_000068: ncbigene

position:16433:1
position: 16433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18377:1
position: 18377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16433-18377:1:exon

LOC120253241
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253241
product: RING-H2 finger protein ATL13-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039261569.1
SIO_010081: LOC120253241
subclass of: SO_0000673
so part of: LOC120253241
location: 16433..18377
location: region:16433-18377:1
so has part: feature:16433-18377:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16433-18377:1:exon

LOC120253241
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253241
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RING-H2 finger protein ATL13-like
translation: MSLGKPPLPFFQSLSSPPPPPPPPPPFTNSQSNSIENKISPSILLITVILAVIFFISGLVHLLVRYLLRPINREPEEIDNVTVLQGQLQQLFHLHDAGVDQSYIDTLPIFLYKAIIGLKDPFDCAVCLCEFEADDKLRLLPKCSHAFHLECIDTWLLSHSTCPLCRSSLLPEFSPSCSSPMLLVLESASESSREPDSERIDVGDDELRTSLSGDVHVNQKQAEIDAKDEVVTVKLGKFRNVETSGVAAIGEGEGCSNVETNRNLDQRRCFSMGSFEYVMDESSLLQVSIKLSKKRPAAIQKPGHRGAMSECDCHSRREGFSKAFDHSSRSFESIQGNAGGGVGSSSSSSSNNLQKKESFSISKIWLRQKKKSSVVSGDFSTRAFSFRLSLVRGVTGDSKMKSNVSEPDELQKSGSSEFGVDVEIGSSNSGAVLKAEEGPSFARRTLLWLGGRQNKVVNHV
SIO_010081: LOC120253241
subclass of: SO_0000673
so part of: LOC120253241
location: 16873..18255
location: region:16873-18255:1
so has part: feature:16873-18255:1:exon

XP_039117503.1
type: Protein
SIO_000068: ncbiprotein

position:16873:1
position: 16873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18255:1
position: 18255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16873-18255:1:exon

LOC120253243
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253243
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(20402..25722)
location: region:20402-25722:-1
so has part: feature:20402-25722:-1:exon
subclass of: SO_0000010

120253243
type: Gene
SIO_000068: ncbigene

position:20402:-1
position: 20402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25722:-1
position: 25722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20402-25722:-1:exon

LOC120253243
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253243
product: tRNA-specific adenosine deaminase TAD3
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_039261573.1
SIO_010081: LOC120253243
subclass of: SO_0000673
so part of: LOC120253243
location: complement(join(20402..20602,20830..20939,21077..21550,21970..22072,22892..22974,23458..23579,23988..24060,24144..24195,24295..24394,25592..25722))
location: region:20402-25722:-1
so has part: feature:25592-25722:-1:exon
so has part: feature:24295-24394:-1:exon
so has part: feature:24144-24195:-1:exon
so has part: feature:23988-24060:-1:exon
so has part: feature:23458-23579:-1:exon
so has part: feature:22892-22974:-1:exon
so has part: feature:21970-22072:-1:exon
so has part: feature:21077-21550:-1:exon
so has part: feature:20830-20939:-1:exon
so has part: feature:20402-20602:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25592-25722:-1:exon

position:25592:-1
position: 25592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:24295-24394:-1:exon

position:24295:-1
position: 24295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24394:-1
position: 24394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:24144-24195:-1:exon

position:24144:-1
position: 24144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24195:-1
position: 24195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:23988-24060:-1:exon

position:23988:-1
position: 23988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24060:-1
position: 24060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:23458-23579:-1:exon

position:23458:-1
position: 23458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23579:-1
position: 23579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:22892-22974:-1:exon

position:22892:-1
position: 22892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22974:-1
position: 22974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:21970-22072:-1:exon

position:21970:-1
position: 21970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22072:-1
position: 22072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:21077-21550:-1:exon

position:21077:-1
position: 21077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21550:-1
position: 21550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:20830-20939:-1:exon

position:20830:-1
position: 20830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20939:-1
position: 20939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:20402-20602:-1:exon

position:20602:-1
position: 20602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC120253243
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253243
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: tRNA-specific adenosine deaminase TAD3
translation: MGTDWEIIHIPAKLPSSTEQAAVEVIAATIEPKLANTLVRKLNQICPLENLRHAKRVRKRIIEGKVELAVILCLSFGSSEHMEGMPNDLLQLLNNYQLSPFIARVAECPALSKEEWEEQCKLWPTSYHPPSSLDGAGGFSEEDSQFIINFMKVAIQLAKPNFLGGEAVNAAVIVDPMSKQVIAYGSDQTFSLPSTIISSCSHIGQEPTNSSSQPGGNSPPNNGYLVSKLTPNKHKQPYHRVSCLHPWGWTELNPYDPKPPEKCDSDYAWHPLRHAALVAIENAAARDRSLFPNPASSIKHSTSMDNLLQPDDIPSKRLKTNTPENEKLEEEAAKNVSTSEATRPYLCTGFDIFLVWEPCTMCAMALVHQRIRRIFYAFPNPNDGALGSVHRLQGEKSLNHHYSVFRILAPKLEEHI
SIO_010081: LOC120253243
subclass of: SO_0000673
so part of: LOC120253243
location: complement(join(20434..20602,20830..20939,21077..21550,21970..22072,22892..22974,23458..23579,23988..24060,24144..24195,24295..24361))
location: region:20434-24361:-1
so has part: feature:24295-24361:-1:exon
so has part: feature:24144-24195:-1:exon
so has part: feature:23988-24060:-1:exon
so has part: feature:23458-23579:-1:exon
so has part: feature:22892-22974:-1:exon
so has part: feature:21970-22072:-1:exon
so has part: feature:21077-21550:-1:exon
so has part: feature:20830-20939:-1:exon
so has part: feature:20434-20602:-1:exon

XP_039117507.1
type: Protein
SIO_000068: ncbiprotein

position:20434:-1
position: 20434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24361:-1
position: 24361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24295-24361:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:24144-24195:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:23988-24060:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:23458-23579:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:22892-22974:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:21970-22072:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:21077-21550:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:20830-20939:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:20434-20602:-1:exon

LOC120253244
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253244
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 32022..33602
location: region:32022-33602:1
so has part: feature:32022-33602:1:exon
subclass of: SO_0000010

120253244
type: Gene
SIO_000068: ncbigene

position:32022:1
position: 32022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33602:1
position: 33602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32022-33602:1:exon

LOC120253244
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253244
product: UDP-glycosyltransferase 90A2-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039261574.1
SIO_010081: LOC120253244
subclass of: SO_0000673
so part of: LOC120253244
location: 32022..33602
location: region:32022-33602:1
so has part: feature:32022-33602:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32022-33602:1:exon

LOC120253244
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253244
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: UDP-glycosyltransferase 90A2-like
translation: MSTTTTTITMKEVKKDHILIFPFMAQGHTIPLLHLATFLSTHHHHLQITIITTSGNAPFLQQYLPSSINLSIFPFPSSPLLPTGVESTDHLPSMDLHPIFAATTTNLRPHFHNLLHSLHLSNSLPLCLISDFFLGWTLDVCRLFSVPRLVFHGMSTFSMFICKSLFVHQPYSSEDELFQIPGAPPSLLLSRHQLPDTILTSGDPNNPVTIFLSEIGATDINSWGVIVNSFSFIERGSTLNSLNHSTRTELVHGFLALSLFSLPKLRKEDDDCLQWLDEKKKKKNSVVYVSFGTQTHVTAEQLEEVAAGLETAECEYLWVVRHASWRPPAGETIPHRRERGKIVRWAPQREVLQHEAVGGFVSHCGWNSVLESMVAGVPVLTWPMMAEQALNEKMIVDELGAGLRLRKVGEDGVVKREEIKDGVRELMVGEKGKRVRMKMEELGRMAMEAVEDGGSSHKSLSELIEELQRCRTNGRDDDQGLEMEKVAIDANSLLEYQDCIQIS
SIO_010081: LOC120253244
subclass of: SO_0000673
so part of: LOC120253244
location: 32077..33590
location: region:32077-33590:1
so has part: feature:32077-33590:1:exon

XP_039117508.1
type: Protein
SIO_000068: ncbiprotein

position:32077:1
position: 32077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33590:1
position: 33590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32077-33590:1:exon

LOC120253245
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253245
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 35450..36900
location: region:35450-36900:1
so has part: feature:35450-36900:1:exon
subclass of: SO_0000010

120253245
type: Gene
SIO_000068: ncbigene

position:35450:1
position: 35450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36900:1
position: 36900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35450-36900:1:exon

LOC120253245
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253245
product: scopoletin glucosyltransferase-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039261575.1
SIO_010081: LOC120253245
subclass of: SO_0000673
so part of: LOC120253245
location: 35450..36900
location: region:35450-36900:1
so has part: feature:35450-36900:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35450-36900:1:exon

LOC120253245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253245
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: scopoletin glucosyltransferase-like
translation: MKEVKKDHILIFPFMAQGHTIPLLHLATFLSTHHHLQITIITTSGNAPFLRQYLPSSINLSIFPFPSSPLLPIGVESTDHLSSMDLHPIFVTTIAHLRPHLHQLLHSLHLSNSLPLCLISDFFLPWTLDVCRLFSVPRLVFHGMSTFSMFICKSIYTHLKPSSFTSSDELYHVPGGPPSLLLSRHQVPDIFLNSGDPNDPTTIILAEHNTSDINSWGIIVNSFSFIEREYTKLFESFFQNGTRAWLIGPLSLLSSPTLTDEGDCLRWLNDKEMNSVVYVAFGTQAHLTAEQLEEVANGLEAAECEYLWVVRDASWRPPERITTGERGKIVRWAPQREVLQHEAVGGFVSHCGWNSVLESMVAGVPVLTWPMIAEQAINEMMIVDEFGAGLRLRKVGADGVVKKEEIKNGVRELMVGEKGKRVRKKMEELGRMAMEAVEDGGSSHKSLSELIEELQRCRNREDDGLELESLHENHQECIKMS
SIO_010081: LOC120253245
subclass of: SO_0000673
so part of: LOC120253245
location: 35455..36900
location: region:35455-36900:1
so has part: feature:35455-36900:1:exon

XP_039117509.1
type: Protein
SIO_000068: ncbiprotein

position:35455:1
position: 35455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35455-36900:1:exon

LOC120253240
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253240
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(37858..39783)
location: region:37858-39783:-1
so has part: feature:37858-39783:-1:exon
subclass of: SO_0000011

120253240
type: Gene
SIO_000068: ncbigene

position:37858:-1
position: 37858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39783:-1
position: 39783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37858-39783:-1:exon

LOC120253240
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 55577
nc RNA class: lncRNA
gene: LOC120253240
product: uncharacterized LOC120253240
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XR_005534220.1
SIO_010081: LOC120253240
subclass of: SO_0000673
so part of: LOC120253240
location: complement(join(37858..38099,38307..38409,38480..38614,39625..39783))
location: region:37858-39783:-1
so has part: feature:39625-39783:-1:exon
so has part: feature:38480-38614:-1:exon
so has part: feature:38307-38409:-1:exon
so has part: feature:37858-38099:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39625-39783:-1:exon

position:39625:-1
position: 39625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:38480-38614:-1:exon

position:38480:-1
position: 38480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38614:-1
position: 38614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:38307-38409:-1:exon

position:38307:-1
position: 38307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38409:-1
position: 38409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:37858-38099:-1:exon

position:38099:-1
position: 38099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC120253253
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253253
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(42049..47311)
location: region:42049-47311:-1
so has part: feature:42049-47311:-1:exon
subclass of: SO_0000010

120253253
type: Gene
SIO_000068: ncbigene

position:42049:-1
position: 42049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47311:-1
position: 47311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42049-47311:-1:exon

LOC120253253
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253253
product: splicing factor YJU2-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_039261581.1
SIO_010081: LOC120253253
subclass of: SO_0000673
so part of: LOC120253253
location: complement(join(42049..42233,42583..42820,43416..43506,43760..43870,43980..44030,45610..45675,45878..46012,46127..46276,46991..47311))
location: region:42049-47311:-1
so has part: feature:46991-47311:-1:exon
so has part: feature:46127-46276:-1:exon
so has part: feature:45878-46012:-1:exon
so has part: feature:45610-45675:-1:exon
so has part: feature:43980-44030:-1:exon
so has part: feature:43760-43870:-1:exon
so has part: feature:43416-43506:-1:exon
so has part: feature:42583-42820:-1:exon
so has part: feature:42049-42233:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46991-47311:-1:exon

position:46991:-1
position: 46991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:46127-46276:-1:exon

position:46127:-1
position: 46127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46276:-1
position: 46276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:45878-46012:-1:exon

position:45878:-1
position: 45878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46012:-1
position: 46012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:45610-45675:-1:exon

position:45610:-1
position: 45610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45675:-1
position: 45675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:43980-44030:-1:exon

position:43980:-1
position: 43980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44030:-1
position: 44030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:43760-43870:-1:exon

position:43760:-1
position: 43760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43870:-1
position: 43870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:43416-43506:-1:exon

position:43416:-1
position: 43416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43506:-1
position: 43506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:42583-42820:-1:exon

position:42583:-1
position: 42583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42820:-1
position: 42820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:42049-42233:-1:exon

position:42233:-1
position: 42233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC120253253
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253253
product: splicing factor YJU2-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_039261582.1
SIO_010081: LOC120253253
subclass of: SO_0000673
so part of: LOC120253253
location: complement(join(42049..42233,42583..42814,43416..43506,43760..43870,43980..44030,45610..45675,45878..46012,46127..46276,46991..47188))
location: region:42049-47188:-1
so has part: feature:46991-47188:-1:exon
so has part: feature:46127-46276:-1:exon
so has part: feature:45878-46012:-1:exon
so has part: feature:45610-45675:-1:exon
so has part: feature:43980-44030:-1:exon
so has part: feature:43760-43870:-1:exon
so has part: feature:43416-43506:-1:exon
so has part: feature:42583-42814:-1:exon
so has part: feature:42049-42233:-1:exon

position:47188:-1
position: 47188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46991-47188:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46127-46276:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:45878-46012:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:45610-45675:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:43980-44030:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:43760-43870:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:43416-43506:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:42583-42814:-1:exon

position:42814:-1
position: 42814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:42049-42233:-1:exon

LOC120253253
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253253
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: splicing factor YJU2-like isoform X2
translation: MGERKVLNKYYPPDFDPAKIPRRRQPKNQQIKVRMMLPMSIRCSTCGTYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYVVESGAARNFEPWRDEDEATDTAKRKREEEEMGDAMKSLENRAMDSKQDMDILAALEEMKSMKSRHATVSIDLMLQALQKPVNEKEEEITEEDEALIRSIYQESSQGGYLRRIDDDDDDVKDSHQPSNIAGDSSNSDTKIKHASEILACVGNPTDTLAKTSIFNASKRGVGASSPLKPKFMLKPKTVSSDARKKPRTEPPENNKPKDANKNDAKEGDTPTGLLSLCQNYDSDESE
SIO_010081: LOC120253253
subclass of: SO_0000673
so part of: LOC120253253
location: complement(join(42615..42814,43416..43506,43760..43870,43980..44030,45610..45675,45878..46012,46127..46276,46991..47188))
location: region:42615-47188:-1
so has part: feature:46991-47188:-1:exon
so has part: feature:46127-46276:-1:exon
so has part: feature:45878-46012:-1:exon
so has part: feature:45610-45675:-1:exon
so has part: feature:43980-44030:-1:exon
so has part: feature:43760-43870:-1:exon
so has part: feature:43416-43506:-1:exon
so has part: feature:42615-42814:-1:exon

XP_039117516.1
type: Protein
SIO_000068: ncbiprotein

position:42615:-1
position: 42615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46991-47188:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46127-46276:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:45878-46012:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:45610-45675:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:43980-44030:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:43760-43870:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:43416-43506:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:42615-42814:-1:exon

LOC120253253
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253253
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: splicing factor YJU2-like isoform X1
translation: MGERKVLNKYYPPDFDPAKIPRRRQPKNQQIKVRMMLPMSIRCSTCGTYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYVVESGAARNFEPWRDEDEATDTAKRKREEEEMGDAMKSLENRAMDSKQDMDILAALEEMKSMKSRHATVSIDLMLQALQKPVNEKEEEITEEDEALIRSIYQESSQGGYLRRIDDDDDDVKDSHQPSNIAGDSSNSDTKIKHASEILACVGNPTDTLAKTSIFNASKRGDTVGASSPLKPKFMLKPKTVSSDARKKPRTEPPENNKPKDANKNDAKEGDTPTGLLSLCQNYDSDESE
SIO_010081: LOC120253253
subclass of: SO_0000673
so part of: LOC120253253
location: complement(join(42615..42820,43416..43506,43760..43870,43980..44030,45610..45675,45878..46012,46127..46276,46991..47188))
location: region:42615-47188:-1
so has part: feature:46991-47188:-1:exon
so has part: feature:46127-46276:-1:exon
so has part: feature:45878-46012:-1:exon
so has part: feature:45610-45675:-1:exon
so has part: feature:43980-44030:-1:exon
so has part: feature:43760-43870:-1:exon
so has part: feature:43416-43506:-1:exon
so has part: feature:42615-42820:-1:exon

XP_039117515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46991-47188:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46127-46276:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:45878-46012:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:45610-45675:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:43980-44030:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:43760-43870:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:43416-43506:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:42615-42820:-1:exon

LOC120253246
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253246
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 48746..49672
location: region:48746-49672:1
so has part: feature:48746-49672:1:exon
subclass of: SO_0000010

120253246
type: Gene
SIO_000068: ncbigene

position:48746:1
position: 48746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49672:1
position: 49672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48746-49672:1:exon

LOC120253246
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253246
product: uncharacterized LOC120253246
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_039261576.1
SIO_010081: LOC120253246
subclass of: SO_0000673
so part of: LOC120253246
location: 48746..49672
location: region:48746-49672:1
so has part: feature:48746-49672:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48746-49672:1:exon

LOC120253246
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253246
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC120253246
translation: MAILREAISIPRRNKKLFIPVLLLAFIPSSFLLMGNYVSIFPFLFNFIIKLHLLSKTHASNPEFYSILVGLKQDAESLIHVDIVFTISSYIISLFSMIIIIHATSMVFSGKQVTVKDLFSMIKRRWKGPVITRVYFTILWIGYTVLSVCLIAILMLNSNGSVGVFLFGGFVAVLVRLFYVYLSMVWMIGLVISVLDEACYGLGAMGKAGELIEGRKLQGFFISFTLLCFDTMLIGIYSLIISTVHPQLKVQKVGGMLILTVSVLLKIFSQMVYTLFYYECRKNQGKLDEELGAIFYTRVPSSLNVNDV
SIO_010081: LOC120253246
subclass of: SO_0000673
so part of: LOC120253246
location: 48746..49672
location: region:48746-49672:1
so has part: feature:48746-49672:1:exon

XP_039117510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48746-49672:1:exon

LOC120253242
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253242
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(50812..53315)
location: region:50812-53315:-1
so has part: feature:50812-53315:-1:exon
subclass of: SO_0000010

120253242
type: Gene
SIO_000068: ncbigene

position:50812:-1
position: 50812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53315:-1
position: 53315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50812-53315:-1:exon

LOC120253242
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253242
product: uncharacterized LOC120253242, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_039261572.1
SIO_010081: LOC120253242
subclass of: SO_0000673
so part of: LOC120253242
location: complement(join(50812..50934,51152..51291,51431..51595,51847..51895,51985..52022,52477..52616,52774..52836,52934..53315))
location: region:50812-53315:-1
so has part: feature:52934-53315:-1:exon
so has part: feature:52774-52836:-1:exon
so has part: feature:52477-52616:-1:exon
so has part: feature:51985-52022:-1:exon
so has part: feature:51847-51895:-1:exon
so has part: feature:51431-51595:-1:exon
so has part: feature:51152-51291:-1:exon
so has part: feature:50812-50934:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:52934-53315:-1:exon

position:52934:-1
position: 52934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:52774-52836:-1:exon

position:52774:-1
position: 52774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52836:-1
position: 52836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:52477-52616:-1:exon

position:52477:-1
position: 52477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52616:-1
position: 52616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:51985-52022:-1:exon

position:51985:-1
position: 51985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52022:-1
position: 52022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:51847-51895:-1:exon

position:51847:-1
position: 51847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51895:-1
position: 51895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:51431-51595:-1:exon

position:51431:-1
position: 51431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51595:-1
position: 51595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:51152-51291:-1:exon

position:51152:-1
position: 51152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51291:-1
position: 51291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:50812-50934:-1:exon

position:50934:-1
position: 50934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC120253242
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253242
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC120253242 isoform X2
translation: MNQMASVSGSPSLVSRHSQLKLGLGLGFREIPKFAGFVQNRELRRCSLVYRYSGMGVEALATGSGGVNSSPWDEKPYELLPSGKRAYFDELDVVTFLDPPKELIPIDPASYNPASYLWKKIGDIPEERRCRLLSIVKPSLIPRIWEVVGTRYQDAKLAKRSASALLSLDDDPVVMQESWSCRTSKGPLPLSWLNDFKKALFRGKDGGTYGRVLLGGPIGAGLAKFYGPLYFTVRQAVEVMSTEQPCDITFNFGDGLLNLNDFPDGFPQPAKHRSPFNDHLVIYIRHVGPGVLVGQAWQEGKELDQVPKKFCGDILMELKI
SIO_010081: LOC120253242
subclass of: SO_0000673
so part of: LOC120253242
location: complement(join(50920..50934,51152..51291,51431..51595,51847..51895,51985..52022,52477..52616,52774..52836,52934..53286))
location: region:50920-53286:-1
so has part: feature:52934-53286:-1:exon
so has part: feature:52774-52836:-1:exon
so has part: feature:52477-52616:-1:exon
so has part: feature:51985-52022:-1:exon
so has part: feature:51847-51895:-1:exon
so has part: feature:51431-51595:-1:exon
so has part: feature:51152-51291:-1:exon
so has part: feature:50920-50934:-1:exon

XP_039117506.1
type: Protein
SIO_000068: ncbiprotein

position:50920:-1
position: 50920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53286:-1
position: 53286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52934-53286:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:52774-52836:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52477-52616:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:51985-52022:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:51847-51895:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:51431-51595:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:51152-51291:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:50920-50934:-1:exon

LOC120253242
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253242
product: uncharacterized LOC120253242, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_039261570.1
SIO_010081: LOC120253242
subclass of: SO_0000673
so part of: LOC120253242
location: complement(join(50961..51291,51431..51595,51847..51895,51985..52022,52477..52616,52774..52836,52934..53315))
location: region:50961-53315:-1
so has part: feature:52934-53315:-1:exon
so has part: feature:52774-52836:-1:exon
so has part: feature:52477-52616:-1:exon
so has part: feature:51985-52022:-1:exon
so has part: feature:51847-51895:-1:exon
so has part: feature:51431-51595:-1:exon
so has part: feature:50961-51291:-1:exon

position:50961:-1
position: 50961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52934-53315:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:52774-52836:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52477-52616:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:51985-52022:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:51847-51895:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:51431-51595:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:50961-51291:-1:exon

LOC120253242
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253242
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC120253242 isoform X1
translation: MNQMASVSGSPSLVSRHSQLKLGLGLGFREIPKFAGFVQNRELRRCSLVYRYSGMGVEALATGSGGVNSSPWDEKPYELLPSGKRAYFDELDVVTFLDPPKELIPIDPASYNPASYLWKKIGDIPEERRCRLLSIVKPSLIPRIWEVVGTRYQDAKLAKRSASALLSLDDDPVVMQESWSCRTSKGPLPLSWLNDFKKALFRGKDGGTYGRVLLGGPIGAGLAKFYGPLYFTVRQAVEVMSTEQPCDITFNFGDGLLNLNDFPDGFPQPAKHRSPFNDHLVIYIRHVGPGVLVGQAWQEGKELDQVPKKFCGDILMVKDYVAF
SIO_010081: LOC120253242
subclass of: SO_0000673
so part of: LOC120253242
location: complement(join(51128..51291,51431..51595,51847..51895,51985..52022,52477..52616,52774..52836,52934..53286))
location: region:51128-53286:-1
so has part: feature:52934-53286:-1:exon
so has part: feature:52774-52836:-1:exon
so has part: feature:52477-52616:-1:exon
so has part: feature:51985-52022:-1:exon
so has part: feature:51847-51895:-1:exon
so has part: feature:51431-51595:-1:exon
so has part: feature:51128-51291:-1:exon

XP_039117504.1
type: Protein
SIO_000068: ncbiprotein

position:51128:-1
position: 51128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52934-53286:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:52774-52836:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52477-52616:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:51985-52022:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:51847-51895:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:51431-51595:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:51128-51291:-1:exon

LOC120253256
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253256
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 53708..58010
location: region:53708-58010:1
so has part: feature:53708-58010:1:exon
subclass of: SO_0000010

120253256
type: Gene
SIO_000068: ncbigene

position:53708:1
position: 53708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58010:1
position: 58010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53708-58010:1:exon

LOC120253256
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253256
product: protein CYPRO4-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
transcript id: XM_039261585.1
SIO_010081: LOC120253256
subclass of: SO_0000673
so part of: LOC120253256
location: join(53708..55329,57729..58010)
location: region:53708-58010:1
so has part: feature:53708-55329:1:exon
so has part: feature:57729-58010:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:53708-55329:1:exon

position:55329:1
position: 55329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:57729-58010:1:exon

position:57729:1
position: 57729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC120253256
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253256
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein CYPRO4-like
translation: MGGSHSREGLSLSDSEPEXDEYQETEEEEGEKQQSDLHLRGSTSKTRTPISVAEVDAKLQSLKLKYSPKSPNPSLGSNSPNAAKLYLHIGGSLPSAKWIISEKLTFFSFSKPDYSDDDDSPTSSASVSAWVLAVGTKIKARVGPELQLKPFPAQRRVDFVADGVWALKFFSVGSYHGFLSEYQKCLFENTYNLEANDANKVRVFGNDFLGWAKPEVADDAIWEDAEESFEKSPRATVARGHDLLEEFEEEAGNDGGIQSLALGALENSFLVSDSGVQVLKNFSHGVHGKGVSVKLSSGNKGVQYETPKKAVLMRGETNMLLMSPATAGKPHSTGVRQLDIETGTVVTEWKFEKDGTDITMRDITNDSKGAQLDPSESTFLGLDDNRLCRWDMRDRGGIVQNLANSMESPVLQWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGRWILGTTDTYLILISTIFKDKDGKEKTGFSGRMGNRIAAPRLLKLTPLDAHLAGKNKIQKGQFSWVTENGKQERHLVATVGKFSIIWNFQQVKNSHHECYLNQEGLKSCYCYKIVPKEESIVDSRFMHEKFATSDSPEAPLVVVTPMKVSSFSISNRR
SIO_010081: LOC120253256
subclass of: SO_0000673
so part of: LOC120253256
location: join(53708..55329,57729..58010)
location: region:53708-58010:1
so has part: feature:53708-55329:1:exon
so has part: feature:57729-58010:1:exon

XP_039117519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53708-55329:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:57729-58010:1:exon

LOC120253254
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253254
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(71820..75337)
location: region:71820-75337:-1
so has part: feature:71820-75337:-1:exon
subclass of: SO_0000010

120253254
type: Gene
SIO_000068: ncbigene

position:71820:-1
position: 71820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75337:-1
position: 75337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71820-75337:-1:exon

LOC120253254
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253254
product: glutamate receptor 2.7-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_039261583.1
SIO_010081: LOC120253254
subclass of: SO_0000673
so part of: LOC120253254
location: complement(join(71820..72584,72669..73376,73451..74766,75000..75337))
location: region:71820-75337:-1
so has part: feature:75000-75337:-1:exon
so has part: feature:73451-74766:-1:exon
so has part: feature:72669-73376:-1:exon
so has part: feature:71820-72584:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:75000-75337:-1:exon

position:75000:-1
position: 75000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:73451-74766:-1:exon

position:73451:-1
position: 73451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74766:-1
position: 74766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:72669-73376:-1:exon

position:72669:-1
position: 72669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73376:-1
position: 73376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:71820-72584:-1:exon

position:72584:-1
position: 72584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC120253254
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253254
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor 2.7-like
translation: MKEMGKPRYHQLILFLFLLCSRLNIGQNKAYAQGTTSNNSRNTTSSFDVGVILDTKTWVGNISWRCMAMAMEDFYNSHSNFTKKLSLHLRDANKDDRVASASAAIDLLKNVQVQAIIGPQTSRQAKFVIELGNSAQVPIISFTAKSPSLSTKQSPYFIRTGMNDASQAKVLASLVQNFGWRQVVLIYADTEFGNGIIPHVIDALIEIDARVTYRSPIPISANDEAISKELEKLKDMQTRVFIVHMPYSLGFKVFSNANKTGMMNKGYVWITTYGLTDIVDLYGSSATSVMQGVLGIKPYISEDNPRLQDFKARFVKKFKLENPSAQISEPLTVFGLWAYDTVWSLAMAAESLSSANYTFSMNNVRKNSTDLESIGKSQTGLEIVQWISNSTFDRISGKFQLIDRQREVDKFEIVNVVENGRKRIGFWTPVYGFSKELNSKNVSIEVAKWPGDSDHVPPRGWEWPTNGRNLSVGIPVKPGFPEFVNVTTNDSSIRPTGYCIEIFDKVMAALPYKVNYTYELFANEKGEMNGSYDDLVYQVYVKKYDVVVGDITVIANRSQYVDFTLPYTESGVSMIVPVKDQSRKNAWTFAEPLSTNLWIASGLFFIFTGIVIWILEHRVNVEFRGPPSNQIGTIFYFIFSTLVFSHRETIVSNLARIVLIIWFFVVLILQQSYTASLSSILTVEQLQPTLNDLTELARTNDKVGYLVDSFMPNLLKGMNFDETRLIPYNSADEYNEALSNGTVAAVVDEIPYLKVFLHKYCDKYTMVGPTYKTDGFGFAFPIGSPMVADVSRAILRITENKEIMEPLDNQYLYDDEACSVEGDGSSSSMITFRSFWGLFLITGVTSMLALLIHISMFFFQNWRIVRDADPELSFGQRLLLLIKYHDKPDLKCADTFKEKAEEEEEEEMVALEMQSPVSTSYNGHGDHVVGNDDDGDAETPSEGEGTPGREIGGQFPDAPSFADMLSHRRGYDSA
SIO_010081: LOC120253254
subclass of: SO_0000673
so part of: LOC120253254
location: complement(join(71994..72584,72669..73376,73451..74766,75000..75309))
location: region:71994-75309:-1
so has part: feature:75000-75309:-1:exon
so has part: feature:73451-74766:-1:exon
so has part: feature:72669-73376:-1:exon
so has part: feature:71994-72584:-1:exon

XP_039117517.1
type: Protein
SIO_000068: ncbiprotein

position:71994:-1
position: 71994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75309:-1
position: 75309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75000-75309:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73451-74766:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72669-73376:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:71994-72584:-1:exon

LOC120253247
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253247
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(85132..85620)
location: region:85132-85620:-1
so has part: feature:85132-85620:-1:exon
subclass of: SO_0000010

120253247
type: Gene
SIO_000068: ncbigene

position:85132:-1
position: 85132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:85620:-1
position: 85620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85132-85620:-1:exon

LOC120253247
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253247
product: glutamate receptor 2.7-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_039261577.1
SIO_010081: LOC120253247
subclass of: SO_0000673
so part of: LOC120253247
location: complement(85132..85620)
location: region:85132-85620:-1
so has part: feature:85132-85620:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85132-85620:-1:exon

LOC120253247
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253247
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor 2.7-like
translation: MSDIERRWFGDQTNCPKLGASSHQNSLDFTSFWGLFLITGTVSLLAFFLYWITFLYKNRHQLMSNMASQSSLRWRLQSIGQLFDQRDLSSHTFRNAEVKDGSKRSTEDQSPHSSPFNNNCPQSPISFSTSQTFEEGNVSTELATPNSETPLHVVDIAAATDH
SIO_010081: LOC120253247
subclass of: SO_0000673
so part of: LOC120253247
location: complement(85132..85620)
location: region:85132-85620:-1
so has part: feature:85132-85620:-1:exon

XP_039117511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:85132-85620:-1:exon

LOC120253248
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253248
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(85785..86834)
location: region:85785-86834:-1
so has part: feature:85785-86834:-1:exon
subclass of: SO_0000010

120253248
type: Gene
SIO_000068: ncbigene

position:85785:-1
position: 85785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:86834:-1
position: 86834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85785-86834:-1:exon

LOC120253248
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253248
product: glutamate receptor 2.9-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 76% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039261578.1
SIO_010081: LOC120253248
subclass of: SO_0000673
so part of: LOC120253248
location: complement(join(85785..85932,86012..86183,86272..86584,86667..86834))
location: region:85785-86834:-1
so has part: feature:86667-86834:-1:exon
so has part: feature:86272-86584:-1:exon
so has part: feature:86012-86183:-1:exon
so has part: feature:85785-85932:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:86667-86834:-1:exon

position:86667:-1
position: 86667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:86272-86584:-1:exon

position:86272:-1
position: 86272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:86584:-1
position: 86584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:86012-86183:-1:exon

position:86012:-1
position: 86012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:86183:-1
position: 86183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:85785-85932:-1:exon

position:85932:-1
position: 85932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC120253248
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253248
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor 2.9-like
translation: MRRQMRVIAGGFVIEVFEAAVKRLPYALPFEYFNYSSSDGKSTGSYDLLARQVADKKYDAVVADMTITSNRSEYVDFTLPYTVAGISMVVPIKNQRSKNAWIFVKPLTPDLWLVSLGFFVFTGSIIWVLEHRINPEFRGPPTNQIGTIFYFTFSTLVFAHRENIVSNLARLVVIIWVFVVLILQSSYTASLTSLLTVEQFEPSYTHISELKDNGERVGSPQEYAEALAKGSRNGGVAAIIDEIPYLKVFLKDHCDNYTMAGQTYKN
SIO_010081: LOC120253248
subclass of: SO_0000673
so part of: LOC120253248
location: complement(join(85785..85932,86012..86183,86272..86584,86667..86834))
location: region:85785-86834:-1
so has part: feature:86667-86834:-1:exon
so has part: feature:86272-86584:-1:exon
so has part: feature:86012-86183:-1:exon
so has part: feature:85785-85932:-1:exon

XP_039117512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:86667-86834:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:86272-86584:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:86012-86183:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85785-85932:-1:exon

LOC120253250
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253250
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(96643..97840)
location: region:96643-97840:-1
so has part: feature:96643-97840:-1:exon

120253250
type: Gene
SIO_000068: ncbigene

position:96643:-1
position: 96643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:97840:-1
position: 97840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96643-97840:-1:exon

LOC120253250
type: Exon
subclass of: SO_0000147
RO_0002162: 55577
gene: LOC120253250
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC120253250
subclass of: SO_0000673
so part of: LOC120253250
location: complement(96643..97033)
location: region:96643-97033:-1
so has part: feature:96643-97033:-1:exon

position:97033:-1
position: 97033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96643-97033:-1:exon

LOC120253250
type: Exon
subclass of: SO_0000147
RO_0002162: 55577
gene: LOC120253250
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC120253250
subclass of: SO_0000673
so part of: LOC120253250
location: complement(97146..97840)
location: region:97146-97840:-1
so has part: feature:97146-97840:-1:exon

position:97146:-1
position: 97146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97146-97840:-1:exon

LOC120253251
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253251
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(97904..100151)
location: region:97904-100151:-1
so has part: feature:97904-100151:-1:exon
subclass of: SO_0000010

120253251
type: Gene
SIO_000068: ncbigene

position:97904:-1
position: 97904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:100151:-1
position: 100151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97904-100151:-1:exon

LOC120253251
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 55577
gene: LOC120253251
product: leucine-rich repeat receptor-like protein kinase PEPR1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_039261579.1
SIO_010081: LOC120253251
subclass of: SO_0000673
so part of: LOC120253251
location: complement(join(97904..98128,98228..98346,98551..99094,99226..99360,99506..99652,99933..100151))
location: region:97904-100151:-1
so has part: feature:99933-100151:-1:exon
so has part: feature:99506-99652:-1:exon
so has part: feature:99226-99360:-1:exon
so has part: feature:98551-99094:-1:exon
so has part: feature:98228-98346:-1:exon
so has part: feature:97904-98128:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:99933-100151:-1:exon

position:99933:-1
position: 99933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:99506-99652:-1:exon

position:99506:-1
position: 99506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99652:-1
position: 99652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:99226-99360:-1:exon

position:99226:-1
position: 99226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99360:-1
position: 99360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:98551-99094:-1:exon

position:98551:-1
position: 98551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99094:-1
position: 99094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:98228-98346:-1:exon

position:98228:-1
position: 98228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98346:-1
position: 98346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:97904-98128:-1:exon

position:98128:-1
position: 98128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC120253251
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 55577
gene: LOC120253251
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat receptor-like protein kinase PEPR1
translation: MTGSSLGILLYIEAVFGMGSDLFYCFSLFLFSIPISFGLCPDGQALLALSKNLVLPSSIKSSWNSSDPNPCDWWNDSGFLVSEWAFGDSLSEPEQTHRADPRQHRKVVQSPNTFGYLKISCQGRIPLSSSSLRAAANVHIVQSFQGEIPAWLGNCSNLTVFAVVGQSAYENQLEGIIPRELGQLSNLKTLRLFTNYFTGEFPVEIWRIKSLEEVLVYNNSLSGLLSPVMTELRNLKNVTLFNNRFSGVIPQGLGINSSLVQIDFTNNNFVGGIPPNICHGKQLEVLNLGYNLLEGNVPADVGNCSSLRRLILRNNKLSGSLPDFAEDSSLLYMDLRENNLNGPLPPSVVPLSLKNLLLLSQLMLQGNQFSGGIPDFLSGFEMLLECSLIPSEFANLNRLQTLDVSNNNLTGELTSLRDLSSLLQVNVSYNQFTGSFAEKFVKLVGFLSKLISRAMQAFVVRR
SIO_010081: LOC120253251
subclass of: SO_0000673
so part of: LOC120253251
location: complement(join(97904..98128,98228..98346,98551..99094,99226..99360,99506..99652,99933..100151))
location: region:97904-100151:-1
so has part: feature:99933-100151:-1:exon
so has part: feature:99506-99652:-1:exon
so has part: feature:99226-99360:-1:exon
so has part: feature:98551-99094:-1:exon
so has part: feature:98228-98346:-1:exon
so has part: feature:97904-98128:-1:exon

XP_039117513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99933-100151:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:99506-99652:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99226-99360:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:98551-99094:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:98228-98346:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:97904-98128:-1:exon

LOC120253252
type: Gene
subclass of: SO_0000704
RO_0002162: 55577
gene: LOC120253252
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(120368..121202)
location: region:120368-121202:-1
so has part: feature:120368-121202:-1:exon

120253252
type: Gene
SIO_000068: ncbigene

position:120368:-1
position: 120368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:121202:-1
position: 121202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120368-121202:-1:exon

LOC120253252
type: Exon
subclass of: SO_0000147
RO_0002162: 55577
gene: LOC120253252
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 12% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC120253252
subclass of: SO_0000673
so part of: LOC120253252
location: complement(120368..120473)
location: region:120368-120473:-1
so has part: feature:120368-120473:-1:exon

position:120473:-1
position: 120473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120368-120473:-1:exon

LOC120253252
type: Exon
subclass of: SO_0000147
RO_0002162: 55577
gene: LOC120253252
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 12% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC120253252
subclass of: SO_0000673
so part of: LOC120253252
location: complement(120568..120612)
location: region:120568-120612:-1
so has part: feature:120568-120612:-1:exon

position:120568:-1
position: 120568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:120612:-1
position: 120612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120568-120612:-1:exon

LOC120253252
type: Exon
subclass of: SO_0000147
RO_0002162: 55577
gene: LOC120253252
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 12% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC120253252
subclass of: SO_0000673
so part of: LOC120253252
location: complement(120670..121109)
location: region:120670-121109:-1
so has part: feature:120670-121109:-1:exon

position:120670:-1
position: 120670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:121109:-1
position: 121109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120670-121109:-1:exon

LOC120253252
type: Exon
subclass of: SO_0000147
RO_0002162: 55577
gene: LOC120253252
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 12% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC120253252
subclass of: SO_0000673
so part of: LOC120253252
location: complement(121175..121202)
location: region:121175-121202:-1
so has part: feature:121175-121202:-1:exon

position:121175:-1
position: 121175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121175-121202:-1:exon