Salarchaeum japonicum strain JCM 16327 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae.
Salarchaeum japonicum sp. nov., isolated from commercial salt
Submitted (19-OCT-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP085325.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 478.4x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/02/2022 03:55:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,616\nCDSs (total) :: 2,564\nGenes (coding) :: 2,555\nCDSs (with protein) :: 2,555\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 1 of 9\nPseudo Genes (incomplete) :: 8 of 9\nPseudo Genes (internal stop) :: 0 of 9\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013793.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014053516.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313911.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008525773.1
COORDINATES: similar to AA sequence:RefSeq:WP_008445002.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186971.1
COORDINATES: protein motif:HMM:NF013704.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: similar to AA sequence:RefSeq:WP_008313895.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053400.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524581.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659225.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594482.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659227.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594486.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222468.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222467.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183436.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594490.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524593.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183441.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488251.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594496.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825401.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825400.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825399.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183451.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186970.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183453.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184794.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276504.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013035055.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310233.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053427.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488204.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488205.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488208.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488209.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364406.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054273.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458689.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014053544.1
COORDINATES: similar to AA sequence:RefSeq:WP_008012356.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004057837.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945099.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945098.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594548.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594549.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594550.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222434.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594552.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222433.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594554.1
COORDINATES: similar to AA sequence:RefSeq:WP_015409494.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594558.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594559.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594560.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004594561.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594562.1
GO:0004062 - aryl sulfotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594563.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387949.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594565.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594566.1
COORDINATES: protein motif:HMM:NF014665.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594570.1
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594571.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004518545.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222427.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_004594575.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594577.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594578.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594579.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222424.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258433.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594581.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183483.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183484.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364398.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515577.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515578.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222419.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594592.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594594.1
COORDINATES: similar to AA sequence:RefSeq:WP_008005422.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048647.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594602.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594603.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_011222411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594609.1
COORDINATES: similar to AA sequence:RefSeq:WP_006079264.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594610.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048650.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594612.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594613.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762322.1
COORDINATES: similar to AA sequence:RefSeq:WP_008848933.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594617.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387748.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222408.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004048658.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183490.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387755.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107742.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276489.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667196.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667195.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667194.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324459.1