Leptotrichia hongkongensis strain JMUB5056 plasmid pJMUB5056, complete sequence.
type: Entry
definition: Leptotrichia hongkongensis strain JMUB5056 plasmid pJMUB5056, complete sequence.
sequence version: NZ_AP019847.1
sequence date: 2022-12-27
sequence: sequence
division: CON
label: NZ_AP019847.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00174169
keyword: RefSeq
source: Leptotrichia hongkongensis
organism: Leptotrichia hongkongensis
taxonomy: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP019847.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8; Circlator v. 1.5.5; Pilon v.\n 1.22; CLC Genomics Workbench v. 9.5.3\nGenome Coverage :: 67x\nSequencing Technology :: MinION; MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:33:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,244\nCDSs (total) :: 2,179\nGenes (coding) :: 2,160\nCDSs (with protein) :: 2,160\nGenes (RNA) :: 65\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 13 of 19\nPseudo Genes (incomplete) :: 5 of 19\nPseudo Genes (internal stop) :: 3 of 19\nPseudo Genes (multiple problems) :: 2 of 19\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 23107
topology: circular
so has quality: SO_0000988
location: 1..23107
location: region:1-23107:1
RO_0002162: 554406

NZ_AP019847
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00174169
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Leptotrichia hongkongensis Strain JMUB5056
author: Watanabe, S.
author: Cui, L.
journal: Unpublished

2
title: Direct Submission
author: Watanabe, S.
author: Cui, L.
journal: Submitted (23-JUL-2019) Contact:Shinya Watanabe Jichi Medical University, Bacteriology; Yakushiji 3311-1, Shimotsuke, Tochigi 329-0498, Japan URL :http://www.jichi.ac.jp/bacteriology/

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23107:1
position: 23107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23107:1:source
so part of: sequence
organism: Leptotrichia hongkongensis
mol type: genomic DNA
strain: JMUB5056
isolation source: blood
plasmid: pJMUB5056
country: Japan
lat lon: 35.4290 N 133.3248 E
collection date: 2017

554406
type: Taxonomy
SIO_000068: taxonomy

FVE75_RS10780
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10780
old locus tag: JMUB5056_p1001
so part of: sequence
location: 34..9789
location: region:34-9789:1
so has part: feature:34-9789:1:exon
subclass of: SO_0000010

position:34:1
position: 34
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9789:1
position: 9789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34-9789:1:exon

FVE75_RS10780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10780
old locus tag: JMUB5056_p1001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806157.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hemagglutinin repeat-containing protein
translation: MREKSRILRKLTAALLLNVFSFNILADGLQVDPNSRYNTSLDRAQNGVPVVNISTPNGRGVSINEFLEYNVGREGQVLNNADNIGRSHLAGIINANPNLGPNQAANLILLQVNGANRSQIEGYIEALSRQKVNVILSNENGIYLNGAGTINIKNFIPTTGKVKLKDGDVIGIDVEKGRVIIGAGGFDATNTDYVNVIAKAMEMQGNLVGNKVDVTLGENTVDSSGTVASKNGINSVAIDASNLGSMYAGQVRIVSTDRGAGVNSSGLIYSRDAKLEITADGKINVAKIKGDGIEINGTEYTQSELASSDKGINVNASKIKLSGETQANGDINLNGNVENKSNIYTGGNLNTLDMINSGNINASGNITAKDFKNSLATVLSGGNFNVKNLDNSGNIQVSGITDINGKFDNTGSLTSVRRISVSGNIGSTGKILTNEDLSSKDMVTSGTVAAKNLRVDNLSNDGKISTNGELTAKNVKNTGDILSSGRISGSSLVTSGKVQTNETLDIDGLLDNSGTVGASKDISVAGNVLNTGEILTNGDFASKNMDTSGTVVSNNLRTGNLKNDGKIVANKDLTAKKVSSTGDITVVGKISADSLKSSGALRTNEDFSVNGRLDNDGTIETSKNVAVSGDIGNTGKIISGGNLSGRKVTNTGDIAAAGTVSSDDMSTSGTVKANKTITVSGKLENDGAVETAEDVKVSGNIRNTGRIASNGDLTGKDTISSGTIASRNVKADNLSNDGVIIANGDLKAKNVKNTKDITAVGTVSSDDLVTSGNVRANGKITVSGKLENSGAVETSKNISVAGNIKNDGRIAANDDLTGKNTENNGNIYVKNLEVNNLKNTGKVEGVNLKTDDISNSGDITAIGKISSGNIDNSGKLLANDTISAKNIRNATNSSKIAAGKGITGERIDNSGTFATNGDIKATNSLVNSGTVDGKRIDILGADFVNSGKINADNIKANVTNTRNDGFIYSGNDVDLTTGTLINTKEITAVNNVNAANANVTNSGKIASNNRVLLDNSAITNTGEILSNEILMRNAQRFDNTGTIKGNNVELGVNQNINLTGNLHGQQRLKISANNIANNGNTTGNGLIEINSNDFTNNRELASDTVIINGRGEVVNNSMITGNNGKVSGRNITNNDLVAFENILEMNAQGKVQNNKGKAIYGGQALAIRANEIMNDEAEILGGNMDLNAAKITNNVGTIQSTGNITITSSDFQNIGRVSNLGNYEKYYETWDNRRLSEADVLNGWVYHHGDDWDKSSNGSRTRKARHEQREWLETFIRDAGGNSLLLTKYQNDARNALNNGYQRLESESARHPEVALKGKIESRATTEYGKVLASGNITINSANFKNRDSIISGGGLVNITATNFENSVTTGNPVQLKKGKEKLELEIKRYTKRKRPRVKMVAYFHRELTAGDIGYESGQPSVIEGQQVVVSAPNIIQNPIEAGNGKVLNNGGAIGRTLLSSTSVGVNKGTSSANGQVQAAGNTLLSKVNSSFNGNSQINGSSNLNSPINSTFNRAVQIAGNNSGIKDIKNTGIISVNPILASAMFTANMNPSSRYLMETRSRYINLGQYFGSDYFTSRVGYSEIWDRTRRLGDAYYENQLLTRALSEKLGTAFINGKSNQELIKAMMDNASAEGARLGLTVGQELTQDQINSLNEDIVWYVTKNVNGIEVLAPQVYLSKNTRSIINDDTRNRVGGINGTYIETNNLVNNGTKYGNGGITVVNANTVRNETATNLLSEISGDRTYINAAGNIENIGGLIGGRDLVSVVSQNGDVINRTTTREVGYNNGEFDRTRFTDVVSAAEISSKNGPTYIQGKNYTSTGAITAGNTVRIDASENVNINALKLTGEQKFGRNGDNYGSYGFVNHLQSAVNGTDGVMITSGKDTNISGSQVASLGNVNINAQNINVTNVVNSESIESKRVNSGFISTETKTKSAYIESSQGSQIFGNNVVLDSKKDTNVIASDITASKDVLGNGGNILVTAGNNVNILSNTTSQSSSSTT…
SIO_010081: FVE75_RS10780
subclass of: SO_0000673
so part of: FVE75_RS10780
location: 34..9789
location: region:34-9789:1
so has part: feature:34-9789:1:exon

WP_232052687.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34-9789:1:exon

FVE75_RS10785
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10785
old locus tag: JMUB5056_p1002
so part of: sequence
location: 9791..10345
location: region:9791-10345:1
so has part: feature:9791-10345:1:exon
subclass of: SO_0000010

position:9791:1
position: 9791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10345:1
position: 10345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9791-10345:1:exon

FVE75_RS10785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10785
old locus tag: JMUB5056_p1002
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKTKYFIMAFIFLLFLNSCGYLPYIYEQAVVAAGGNPYKDPKPKKDNPQAVFNPKYKQKIELLLQDIVNRELTEKNIYYVNGKEIVLWLPEGVVMDKFSQALKDKRTGYGLPFSINYKKECPGQVLENSVKKYDGLKVVSDSKDYIYIYSFEAEGYVENVKEILTKIKVKNGFTHHCKNDKVE
SIO_010081: FVE75_RS10785
subclass of: SO_0000673
so part of: FVE75_RS10785
location: 9791..10345
location: region:9791-10345:1
so has part: feature:9791-10345:1:exon

WP_147006479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9791-10345:1:exon

FVE75_RS10790
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10790
old locus tag: JMUB5056_p1003
so part of: sequence
location: 10395..10652
location: region:10395-10652:1
so has part: feature:10395-10652:1:exon
subclass of: SO_0000010

position:10395:1
position: 10395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10652:1
position: 10652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10395-10652:1:exon

FVE75_RS10790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10790
old locus tag: JMUB5056_p1003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLVLGIIVIICCLNAVAKNNEVIKSSSRQVIADKIDENLEKTLNFSQSNIISSEALKEFKKSSINKEKENNDITSEDTLIPSK
SIO_010081: FVE75_RS10790
subclass of: SO_0000673
so part of: FVE75_RS10790
location: 10395..10652
location: region:10395-10652:1
so has part: feature:10395-10652:1:exon

WP_147006480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10395-10652:1:exon

FVE75_RS10795
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10795
old locus tag: JMUB5056_p1004
so part of: sequence
location: complement(10893..11507)
location: region:10893-11507:-1
so has part: feature:10893-11507:-1:exon
subclass of: SO_0000010

position:10893:-1
position: 10893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11507:-1
position: 11507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10893-11507:-1:exon

FVE75_RS10795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10795
old locus tag: JMUB5056_p1004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806165.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKFGYARVSTAKQNLTRQIASLENAGCDEVYCDIQSGKNMKRAELQKILSKIRENDTFVVTDIDRLGRNFTEVTELYTKLKDMKVNIAVINQELLNHNVNDRKDEIVNVVVIPLLIYLAERERSILIERINDGIKNMPQKSGKRYSRKTGNVIGRPVKVLNLSKEEQDMLKRVRDKEISVKSFCRFMQISRSSYYKYYRNSYLD
SIO_010081: FVE75_RS10795
subclass of: SO_0000673
so part of: FVE75_RS10795
location: complement(10893..11507)
location: region:10893-11507:-1
so has part: feature:10893-11507:-1:exon

WP_147006481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10893-11507:-1:exon

FVE75_RS10800
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10800
old locus tag: JMUB5056_p1005
so part of: sequence
location: 11769..12368
location: region:11769-12368:1
so has part: feature:11769-12368:1:exon
subclass of: SO_0000010

position:11769:1
position: 11769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12368:1
position: 12368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11769-12368:1:exon

FVE75_RS10800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10800
old locus tag: JMUB5056_p1005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004634141.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
translation: MVQKEILLKEINKNNGIISTKEVLEFGIHKDVLKELTEKKEIIKIANGLYGLPNEEIDEYIYFSHRVPKGIFSHETAAYLQGLSTRMPLIYVMTVPVGDNVSRIKSIKDNIIFKYSKKDYYDIGKTSITNPFGRKIFVYDKERTILDLIKNKNRVDTNVFSEAMKLYFRDDDRDLLKISKYAIYMNMEEQLKQYTEVLL
SIO_010081: FVE75_RS10800
subclass of: SO_0000673
so part of: FVE75_RS10800
location: 11769..12368
location: region:11769-12368:1
so has part: feature:11769-12368:1:exon

WP_147006482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11769-12368:1:exon

FVE75_RS10805
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10805
old locus tag: JMUB5056_p1006
so part of: sequence
location: 12365..13210
location: region:12365-13210:1
so has part: feature:12365-13210:1:exon
subclass of: SO_0000010

position:12365:1
position: 12365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13210:1
position: 13210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12365-13210:1:exon

FVE75_RS10805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10805
old locus tag: JMUB5056_p1006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006702621.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotidyl transferase AbiEii/AbiGii toxin family protein
translation: MKTSEQIKGAIRNISKKTGVNPNSLLQMCLFEGVLEKLSKSKYSKNFILKGGLLISSLIGIDMRSTMDMDTTIKGIPVNEKTISKIVKEILEIEIDADIDYKLVKLTPIRQKDVYEDFCAKISCTFGKINAVLNIDITTGDVITPREMRYFYSKILESGTIPIMTYTIESVIAEKFETISSRNITTTRARDFYDLYMLYHLYKDKIDKDILREAIERTSEHRGSIKSVSQYKEVVDLFKISGTTKTLWEKYIKSNPYAKDIDFLETITAYEKIGECMLKTK
SIO_010081: FVE75_RS10805
subclass of: SO_0000673
so part of: FVE75_RS10805
location: 12365..13210
location: region:12365-13210:1
so has part: feature:12365-13210:1:exon

WP_060917629.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12365-13210:1:exon

FVE75_RS10810
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10810
old locus tag: JMUB5056_p1007
so part of: sequence
location: complement(13243..15366)
location: region:13243-15366:-1
so has part: feature:13243-15366:-1:exon
subclass of: SO_0000010

position:13243:-1
position: 13243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15366:-1
position: 15366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13243-15366:-1:exon

FVE75_RS10810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10810
old locus tag: JMUB5056_p1007
inference: COORDINATES: protein motif:HMM:NF013258.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MAEISAINNFKKYNSKSGRSSINNVVKEAFRELEKFKNNVNQELTQFNKILVKDLSVLERQYYDTEVDSRSRDVVSVVSQVQTGNFEARNGVDLTYMLSLEKWEQYYKENLEFLNKKFGKNARCVYAVIHFDESTPHLQSMWTFSEENNQKDEYTVSDVNTAKVKSALTSAFLRRNKELGLIAGTDEYKKAFEEFKVQEKPKIIERQLAKLNKNKSDKKFKFESGTSPFTKDFYRTFNEEFVNDFMVKNSSINELKNKVKVFSNEGAEVVVRRTEKVNSSEDLDRTKFAMEKEKKELESKIGSNNYSKNEFMKYTEILSKREIIDRKKKISKEDFLNEFKNYETDFKVRESNKGITDFKRIFNIKKIIRDKLNQRQNNKNFKKNLKKEIKLFDEVFKNVDFEAINKKIEDYSKGEKVEELIKNRENLYFQIKTLETKASNLKSSINFLEKEQNSKNNEIRNLDEQIWEKKMEAEKPYVVSERRKEELINEALNEARKRGDTLMRNIKKDVEKEEAKNNAIKQDILDKRLQMERELQEINNKRRQLNDIYVDLEEKKRRRKAELEKLAQPIIQKEVDNLVREHLKYYEVTDKDILNFKANNKFEYDELFGEAEARAYEKIKGAYIRRKHDAGNKFIKQMTNILHEDSNGKFSLLEIEKTVIAAIENVPDNTYSWWNDFKNNLNIELEKTVKDKNVVRNRSSSQYDRSL
SIO_010081: FVE75_RS10810
subclass of: SO_0000673
so part of: FVE75_RS10810
location: complement(13243..15366)
location: region:13243-15366:-1
so has part: feature:13243-15366:-1:exon

WP_147006483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13243-15366:-1:exon

FVE75_RS10820
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10820
old locus tag: JMUB5056_p1008
so part of: sequence
location: complement(15848..16480)
location: region:15848-16480:-1
so has part: feature:15848-16480:-1:exon
subclass of: SO_0000010

position:15848:-1
position: 15848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16480:-1
position: 16480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15848-16480:-1:exon

FVE75_RS10820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10820
old locus tag: JMUB5056_p1008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806170.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKKFNLNLSKINSKKVPVVAKIESLYNINYEELDISGTEKEKLIKYENDITFHKEKSIEHIFKYSKAIFEANQIFSNRGNGLFGKWIEKLGIDRDSANVAIRKYSLFLEYQTKGLKKPEKVLELPNRTVKTLTGQKKDNFKETEIIEVITSDNPSSKLKEIEEQKEAIKLSDIEEKRIFLTREKVKRQHLIKKIRQEIRDIEEQIKDLI
SIO_010081: FVE75_RS10820
subclass of: SO_0000673
so part of: FVE75_RS10820
location: complement(15848..16480)
location: region:15848-16480:-1
so has part: feature:15848-16480:-1:exon

WP_147006484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15848-16480:-1:exon

FVE75_RS10825
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10825
old locus tag: JMUB5056_p1009
so part of: sequence
location: complement(16477..17217)
location: region:16477-17217:-1
so has part: feature:16477-17217:-1:exon
subclass of: SO_0000010

position:16477:-1
position: 16477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17217:-1
position: 17217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16477-17217:-1:exon

FVE75_RS10825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10825
old locus tag: JMUB5056_p1009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018450716.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKKIAIVNNKGGCGKTTTVFNLAHYFAKQGLKTLAIDTDPQLNLSTNFGVNVNELNSSLGDYLLDKVKKFKPEILNENLYLISAGPEAEKDMEELKNQGPYYYQLLNNFLENLSENYDVVVFDTAPAFNAYTTSAIYTSSVYPVILPGINELLGLNATINFTQGLGKDISGIILIRKEKTALSDQIQEQLQEEYKDYLLNSIIRKNVALSECIVTHQSIFDYSKNANGAKDYSNLAEEIMKKEGMV
SIO_010081: FVE75_RS10825
subclass of: SO_0000673
so part of: FVE75_RS10825
location: complement(16477..17217)
location: region:16477-17217:-1
so has part: feature:16477-17217:-1:exon

WP_147006485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16477-17217:-1:exon

FVE75_RS10830
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10830
old locus tag: JMUB5056_p1010
so part of: sequence
location: complement(17336..18136)
location: region:17336-18136:-1
so has part: feature:17336-18136:-1:exon
subclass of: SO_0000010

position:17336:-1
position: 17336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18136:-1
position: 18136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17336-18136:-1:exon

FVE75_RS10830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10830
old locus tag: JMUB5056_p1010
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MAIFKTFKINLDEQILMISLNEDFRFLLNDFNKEWTRFELEEFVNLKSSYVKEFYRRMKQFRKTGFWRCSIDEFRYLMDIPENYKITNIDTRVLKPIMRELGEKYNLKIEKKYGFSGGRGRSRVTGFEFKFSTEKKVDIVAVTEKEDNNNSIPLSKPRKPKKKEETRVVSERKTRIVEAPPKIEKEKTLREKIWDKINENTKTIENLEAIYTGLKDKIQFRKLTEKYPQKIEEIKNMNMQLKAIYNIDENDFTQEIIELAEDLIIK
SIO_010081: FVE75_RS10830
subclass of: SO_0000673
so part of: FVE75_RS10830
location: complement(17336..18136)
location: region:17336-18136:-1
so has part: feature:17336-18136:-1:exon

WP_232052685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17336-18136:-1:exon

FVE75_RS10835
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10835
old locus tag: JMUB5056_p1011
so part of: sequence
location: complement(18109..18519)
location: region:18109-18519:-1
so has part: feature:18109-18519:-1:exon
subclass of: SO_0000010

position:18109:-1
position: 18109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18519:-1
position: 18519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18109-18519:-1:exon

FVE75_RS10835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10835
old locus tag: JMUB5056_p1011
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MGNEIVKYNNDFNNQALRNFSSEELNLLVTFFHKLKEKGTDVLEYSFYELKKLIMLEKNMTVKEFTNTIMNVNKKLLSLNYTYRENNTIVQMAIFKTFKINLDEQILMISLNEDFRSIHTEKIIQLYKWQFLKLLK
SIO_010081: FVE75_RS10835
subclass of: SO_0000673
so part of: FVE75_RS10835
location: complement(18109..18519)
location: region:18109-18519:-1
so has part: feature:18109-18519:-1:exon

WP_232052686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18109-18519:-1:exon

FVE75_RS10840
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10840
old locus tag: JMUB5056_p1012
so part of: sequence
location: 19626..21098
location: region:19626-21098:1
so has part: feature:19626-21098:1:exon
subclass of: SO_0000010

position:19626:1
position: 19626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21098:1
position: 21098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19626-21098:1:exon

FVE75_RS10840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10840
old locus tag: JMUB5056_p1012
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: autotransporter outer membrane beta-barrel domain-containing protein
translation: MKKRLLLGIVLLGINSFSKMTITSYNNGSSVSNGSLTEAGHNFSGIVQFLGNQGGTYVIKLDSGTKIETGTRFDLDPNTTITIEGANGTIGTIVNGSSAYPVGAPVSTKHYYFWQDLDENSATLPESGVLNGNLYTPSVISRSNNASTAITHVTTKVLPPNTASTTTPGISTPTPSTPSTGTTPITGNTAPSNKGKKVLVIPRSRVDLDLVENAKMTMIKNVEKKIEKGEWDLNIEYVGGVGTKYTDKTHDILQYNGKSNGVILSLNKNYDKLTLGGLFGYQNSKVKYKDFYNGIKEKIGSYQFLLNAKYDFNENFDLIGTLVYSTNKHKFDGSNIISYNWINDAEYTSNIFDIETRLGYKYLFTNGYIKPYLGIGVLNLKEGAINKIGAKKTSETALNSVLGIYGVAELNKIDLYGNVEYRQKYGKNSYHNKRDVDLTTKIDALNYKKTTVNANIGLRYKITDMFDINTSYGLNNLKNNIIKIGIGIQY
SIO_010081: FVE75_RS10840
subclass of: SO_0000673
so part of: FVE75_RS10840
location: 19626..21098
location: region:19626-21098:1
so has part: feature:19626-21098:1:exon

WP_147006486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19626-21098:1:exon

FVE75_RS10845
type: Gene
subclass of: SO_0000704
RO_0002162: 554406
locus tag: FVE75_RS10845
old locus tag: JMUB5056_p1013
so part of: sequence
location: 21259..23067
location: region:21259-23067:1
so has part: feature:21259-23067:1:exon
subclass of: SO_0000010

position:21259:1
position: 21259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23067:1
position: 23067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21259-23067:1:exon

FVE75_RS10845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 554406
locus tag: FVE75_RS10845
old locus tag: JMUB5056_p1013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018498927.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ShlB/FhaC/HecB family hemolysin secretion/activation protein
translation: MGYKKIIILGTFLIASLAFPSPVNEANRIIDIQQRQLEQERVRQQQEKMQKEFENTKFDSPKSQVDKDIESGNLNSNKFLIKSVNIKDNDRLLSQREKNKIIGKYVFLELSSNDIRNLLTDLTNKLISKGYTTSVVNFDRNNDLTTGTLNLEIVAGRIEDIRINSGNGLDKYKEFFMFSKNKGKIFNIRDIDTATDNFNSINANNMTMEVLPGRKENYSRIEVKNRLKNKYTVGILANNYGDSKQNGIWRRGINLNIDSPLGIGDNFYFTYMTVPKKDPNRSWKKTVEQLQPGEILPIGPTGYDPLKGDTLPYKRRLDMFNFGYTMKFRTYTLKFNSSKSIQESSFYSANTVYDMYSGSHTLSADLEKILFRNQKSKVSLDLGIKRKHNQSYLEKSALSDRKLAIGTLSLNATTSLFGGIFGSSFGYERGLKIFHAERDSGKIDTTPKAQFHKYSMNLSYYKPITNNLVYRANVSGSYSNDVLYGSERQTIGGVGSVGGYHTRESIQGDKAIEVSNEIAYNIPVKKFAVVSPYVNYGYGAAKYNRDKSKYRTGYVTGMTAGIRFDTKIFDFDFGYARPMSHSDYLSPKKQEMYFSGSLKVSF
SIO_010081: FVE75_RS10845
subclass of: SO_0000673
so part of: FVE75_RS10845
location: 21259..23067
location: region:21259-23067:1
so has part: feature:21259-23067:1:exon

WP_147006487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21259-23067:1:exon