Leptotrichia hongkongensis strain JMUB5056 plasmid pJMUB5056, complete sequence.
Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia.
Complete Genome Sequence of Leptotrichia hongkongensis Strain JMUB5056
Submitted (23-JUL-2019) Contact:Shinya Watanabe Jichi Medical University, Bacteriology; Yakushiji 3311-1, Shimotsuke, Tochigi 329-0498, Japan URL :http://www.jichi.ac.jp/bacteriology/
REFSEQ INFORMATION: The reference sequence is identical to\nAP019847.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8; Circlator v. 1.5.5; Pilon v.\n 1.22; CLC Genomics Workbench v. 9.5.3\nGenome Coverage :: 67x\nSequencing Technology :: MinION; MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:33:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,244\nCDSs (total) :: 2,179\nGenes (coding) :: 2,160\nCDSs (with protein) :: 2,160\nGenes (RNA) :: 65\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 13 of 19\nPseudo Genes (incomplete) :: 5 of 19\nPseudo Genes (internal stop) :: 3 of 19\nPseudo Genes (multiple problems) :: 2 of 19\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006806157.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006806165.1
COORDINATES: similar to AA sequence:RefSeq:WP_004634141.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006702621.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF013258.2
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006806170.1
COORDINATES: similar to AA sequence:RefSeq:WP_018450716.1
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018498927.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein