Acidovorax carolinensis strain NA2 plasmid pACNA2.1, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.
Polyphasic characterization of four soil-derived phenanthrene-degrading Acidovorax strains and proposal of Acidovorax phenanthrenivorans sp. nov.
Submitted (17-MAY-2017) Environmental Sciences and Engineering, University of North Carolina - Chapel Hill, 0030 Michael Hooker Research Center, Chapel Hill, NC 27599-7431, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP021360.1.\nBacteria and source DNA available from Michael Aitken, UNC.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2015\nAssembly Method :: Celera Assembler v. 2015; HGAP3 v. 2015\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 111.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 05:42:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,822\nCDSs (total) :: 3,754\nGenes (coding) :: 3,696\nCDSs (with protein) :: 3,696\nGenes (RNA) :: 68\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 18 of 58\nPseudo Genes (incomplete) :: 42 of 58\nPseudo Genes (internal stop) :: 8 of 58\nPseudo Genes (multiple problems) :: 9 of 58\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017405301.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
TnsA endonuclease N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF020859.2
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017405303.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003447716.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013952060.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008904480.1
COORDINATES: similar to AA sequence:RefSeq:WP_007852763.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005796519.1
COORDINATES: similar to AA sequence:RefSeq:WP_005793033.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010465430.1
COORDINATES: similar to AA sequence:RefSeq:WP_012203340.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_012203342.1
COORDINATES: protein motif:HMM:TIGR02292.1
COORDINATES: similar to AA sequence:RefSeq:WP_011806883.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF023014.2
COORDINATES: similar to AA sequence:RefSeq:WP_019751562.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_009550118.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_086558108.1
COORDINATES: similar to AA sequence:RefSeq:WP_003052404.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006298689.1
GO:0000041 - transition metal ion transport [Evidence IEA]
energy-coupling factor ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011801549.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012746172.1
COORDINATES: similar to AA sequence:RefSeq:WP_008906452.1
COORDINATES: similar to AA sequence:RefSeq:WP_005673028.1
GO:0008168 - methyltransferase activity [Evidence IEA]
cobalt-precorrin-5B (C(1))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012746169.1
bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011801544.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008906448.1
cobalamin biosynthesis central domain-containing protein
COORDINATES: protein motif:HMM:NF014006.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011731004.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008906446.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011767260.1
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_011801537.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005674349.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005674348.1
COORDINATES: similar to AA sequence:RefSeq:WP_012196451.1
COORDINATES: similar to AA sequence:RefSeq:WP_008904128.1
COORDINATES: similar to AA sequence:RefSeq:WP_011458709.1
COORDINATES: similar to AA sequence:RefSeq:WP_020228490.1
COORDINATES: protein motif:HMM:NF037735.2
COORDINATES: protein motif:HMM:NF021255.2
COORDINATES: similar to AA sequence:RefSeq:WP_020485772.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010459410.1
COORDINATES: similar to AA sequence:RefSeq:WP_008903083.1
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_005913001.1
COORDINATES: protein motif:HMM:NF025022.2
COORDINATES: similar to AA sequence:RefSeq:WP_011798355.1
COORDINATES: similar to AA sequence:RefSeq:WP_016451519.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006387099.1
COORDINATES: similar to AA sequence:RefSeq:WP_013690386.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019700243.1
COORDINATES: similar to AA sequence:RefSeq:WP_004343234.1
isocitrate lyase/PEP mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014591656.1
GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence IEA]
2-methylaconitate cis-trans isomerase PrpF
COORDINATES: similar to AA sequence:RefSeq:WP_020227359.1
GO:0047456 - 2-methylisocitrate dehydratase activity [Evidence IEA]
Fe/S-dependent 2-methylisocitrate dehydratase AcnD
COORDINATES: similar to AA sequence:RefSeq:WP_020227360.1
GO:0050440 - 2-methylcitrate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013542058.1
COORDINATES: similar to AA sequence:RefSeq:WP_016448409.1