Polypterus senegalus senegalus mitochondrion, complete genome.
type: Entry
definition: Polypterus senegalus senegalus mitochondrion, complete genome.
sequence version: NC_004418.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_004418.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Polypterus senegalus senegalus (gray bichir)
organism: Polypterus senegalus senegalus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus.
reference: 1
references: 12470943
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AP004352.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16627
topology: circular
so has quality: SO_0000988
location: 1..16627
location: region:1-16627:1
RO_0002162: 178879

NC_004418
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the 'ancient fish'
author: Inoue, J.G.
author: Miya, M.
author: Tsukamoto, K.
author: Nishida, M.
journal: Mol. Phylogenet. Evol.
volume: 26
issue: 1
pages: 110-120
year: 2003
pubmed: 12470943

12470943
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (18-NOV-2002) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Inoue, J.G.
journal: Submitted (14-NOV-2001) University of Tokyo, Ocean Research Institute, 1-15-1 Minamidai, Nakano-ku, Tokyo 164-8639, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16627:1
position: 16627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16627:1:source
so part of: sequence
organism: Polypterus senegalus senegalus
organelle: mitochondrion
mol type: genomic DNA
sub species: senegalus

178879
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Phe
so part of: sequence
location: 1..72
location: region:1-72:1
so has part: feature:1-72:1:region

position:72:1
position: 72
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-72:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 178879
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 72..1018
location: region:72-1018:1
so has part: feature:72-1018:1:region

position:1018:1
position: 1018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72-1018:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Val
so part of: sequence
location: 1019..1089
location: region:1019-1089:1
so has part: feature:1019-1089:1:region

position:1019:1
position: 1019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1089:1
position: 1089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1019-1089:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 178879
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1090..2744
location: region:1090-2744:1
so has part: feature:1090-2744:1:region

position:1090:1
position: 1090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2744:1
position: 2744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1090-2744:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2745..2819
location: region:2745-2819:1
so has part: feature:2745-2819:1:region

position:2745:1
position: 2745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2819:1
position: 2819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2745-2819:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: ND1
so part of: sequence
location: 2820..3778
location: region:2820-3778:1
so has part: feature:2820-3778:1:exon
subclass of: SO_0000010

805678
type: Gene
SIO_000068: ncbigene

position:2820:1
position: 2820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3778:1
position: 3778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2820-3778:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: ND1
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3777..3778,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MTLITLIINPLMYIVPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVKPSTASPTLFLLTPTLALTLALILWIPLPMPLALTDLNLTILFILAVSSLSVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLIILSLIMFTGAFTLITFNTTQEAVWLIMPAWPLAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYTNILLMNALSAILFLGPSFNILTINLNWAIKTTLLASLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIIWHISLPISLAGSPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2820..3778
location: region:2820-3778:1
so has part: feature:2820-3778:1:exon

NP_740218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2820-3778:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Ile
so part of: sequence
location: 3779..3849
location: region:3779-3849:1
so has part: feature:3779-3849:1:region

position:3779:1
position: 3779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3849:1
position: 3849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3779-3849:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Gln
so part of: sequence
location: complement(3848..3918)
location: region:3848-3918:-1
so has part: feature:3848-3918:-1:region

position:3848:-1
position: 3848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3918:-1
position: 3918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3848-3918:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Met
so part of: sequence
location: 3918..3987
location: region:3918-3987:1
so has part: feature:3918-3987:1:region

position:3918:1
position: 3918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3987:1
position: 3987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3918-3987:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: ND2
so part of: sequence
location: 3988..5023
location: region:3988-5023:1
so has part: feature:3988-5023:1:exon
subclass of: SO_0000010

805673
type: Gene
SIO_000068: ncbigene

position:3988:1
position: 3988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5023:1
position: 5023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3988-5023:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5023,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MSPYILFIMLMSLGLGTTLTFASSNWFLAWMGLEINTLAIIPLMARHHHPRAVEAATKYFITQAAAAALLLFAGLMNAWQSGQWIIQDMSMPTSALMTLAIAIKLGVAPMHFWLPEVMQGITLNTGLILATWQKLAPLALLYQISNNLMPELMIILGLTSTFIGGWGGLNQTQIRKIMAYSSIAHLGWIISIMHFMPTLAIINLIIYIIMTTTMFMTFNVTNSTSISTLAMNWSKFPTLSAITMLALLSLGGLPPLSGFLPKWLILQELTNQGLMPTATMIALSALLSLYFYLRLSYSLTTTVTPNTHAQTLNWGTKTKTSFILPVVMVMTITMLPISPSIISLF
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3988..5023
location: region:3988-5023:1
so has part: feature:3988-5023:1:exon

NP_740219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3988-5023:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Trp
so part of: sequence
location: 5024..5094
location: region:5024-5094:1
so has part: feature:5024-5094:1:region

position:5024:1
position: 5024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5094:1
position: 5094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5024-5094:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Ala
so part of: sequence
location: complement(5100..5168)
location: region:5100-5168:-1
so has part: feature:5100-5168:-1:region

position:5100:-1
position: 5100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5168:-1
position: 5168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5100-5168:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Asn
so part of: sequence
location: complement(5170..5242)
location: region:5170-5242:-1
so has part: feature:5170-5242:-1:region

position:5170:-1
position: 5170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5242:-1
position: 5242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5170-5242:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Cys
so part of: sequence
location: complement(5279..5346)
location: region:5279-5346:-1
so has part: feature:5279-5346:-1:region

position:5279:-1
position: 5279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5346:-1
position: 5346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5279-5346:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Tyr
so part of: sequence
location: complement(5347..5417)
location: region:5347-5417:-1
so has part: feature:5347-5417:-1:region

position:5347:-1
position: 5347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5417:-1
position: 5417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5347-5417:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: COX1
so part of: sequence
location: 5419..6975
location: region:5419-6975:1
so has part: feature:5419-6975:1:exon
subclass of: SO_0000010

805681
type: Gene
SIO_000068: ncbigene

position:5419:1
position: 5419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6975:1
position: 6975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5419-6975:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MTITRWLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELGQPGALMGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLTSSAVEAGVGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGAINFITTIINMKPPSTSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKNEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKWETPMLWALGFIFLFTVGGLTGIILANSSLDIMLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLHSTWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNSLSSIGSMISLTAVIMFLFILWEAFAAKREVQTVELTYTNVEWLHGCPPPYHTYEEPAFVQSPQARE
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5419..6975
location: region:5419-6975:1
so has part: feature:5419-6975:1:exon

NP_740220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5419-6975:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(6967..7037)
location: region:6967-7037:-1
so has part: feature:6967-7037:-1:region

position:6967:-1
position: 6967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7037:-1
position: 7037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6967-7037:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Asp
so part of: sequence
location: 7040..7108
location: region:7040-7108:1
so has part: feature:7040-7108:1:region

position:7040:1
position: 7040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7108:1
position: 7108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7040-7108:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: COX2
so part of: sequence
location: 7112..7802
location: region:7112-7802:1
so has part: feature:7112-7802:1:exon
subclass of: SO_0000010

805680
type: Gene
SIO_000068: ncbigene

position:7112:1
position: 7112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7802:1
position: 7802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7112-7802:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7802,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPAQLGLQDASSPIMEELLHFHDHALMIVFLISTLVLYIITTTVSTKLTNKHLLDAQEIEMVWTVMPALVLITIALPSLRILYLMDEINDPHLTIKATGHQWYWSYEYTDYETLNFDSYMVPTQDLLPGQFRLLDTDNRMVVPTNSPVRMLITAEDVLHSWAVPSLGLKMDAVPGRLNQATFIATRPGIFFGQCSEICGANHSFMPIAIESAPVKYFESWSSSMLAES
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7112..7802
location: region:7112-7802:1
so has part: feature:7112-7802:1:exon

NP_740221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7112-7802:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Lys
so part of: sequence
location: 7803..7875
location: region:7803-7875:1
so has part: feature:7803-7875:1:region

position:7803:1
position: 7803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7875:1
position: 7875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7803-7875:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: ATP8
so part of: sequence
location: 7876..8043
location: region:7876-8043:1
so has part: feature:7876-8043:1:exon
subclass of: SO_0000010

805679
type: Gene
SIO_000068: ncbigene

position:7876:1
position: 7876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8043:1
position: 8043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7876-8043:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPDPWFIILIFTWTVFLTILPNKVIMHKTPNEPLTKDPSSLLTEIWSWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7876..8043
location: region:7876-8043:1
so has part: feature:7876-8043:1:exon

NP_740222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7876-8043:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: ATP6
so part of: sequence
location: 8034..8716
location: region:8034-8716:1
so has part: feature:8034-8716:1:exon
subclass of: SO_0000010

805672
type: Gene
SIO_000068: ncbigene

position:8034:1
position: 8034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8716:1
position: 8716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8034-8716:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8715..8716,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLTFFDQFASQTFLGIPLIAIALLLPWLLFPTPNKRWMNNRLITIQSWFITRATNQLMLPLNIGAHKWAVVLIALLLFLITLNLLGLLPYTFTPTTQLSMNMALAVPLWLATVLIGMRNQPTHSLAHLLPEGTPTLLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATFVMLPIMPTIAMLTLTVLALLTILEIAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8034..8716
location: region:8034-8716:1
so has part: feature:8034-8716:1:exon

NP_740223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8034-8716:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: COX3
so part of: sequence
location: 8717..9501
location: region:8717-9501:1
so has part: feature:8717-9501:1:exon
subclass of: SO_0000010

805670
type: Gene
SIO_000068: ncbigene

position:8717:1
position: 8717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9501:1
position: 9501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8717-9501:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9500..9501,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVAALLLTSGLAVWFHFKSMTLLAMGLLLMILTMIQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGIWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGKRTEATQALTLTILLGLYFTALQAMEYYEAPFTIADGVYGTTFFVATGFHGLHVIIGSTFLMVCLLRQILYHFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8717..9501
location: region:8717-9501:1
so has part: feature:8717-9501:1:exon

NP_740224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8717-9501:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Gly
so part of: sequence
location: 9502..9571
location: region:9502-9571:1
so has part: feature:9502-9571:1:region

position:9502:1
position: 9502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9571:1
position: 9571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9502-9571:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: ND3
so part of: sequence
location: 9572..9917
location: region:9572-9917:1
so has part: feature:9572-9917:1:exon
subclass of: SO_0000010

805675
type: Gene
SIO_000068: ncbigene

position:9572:1
position: 9572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9917:1
position: 9917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9572-9917:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9917,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLILTMILISSSISTILAIVAFWLPQMNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWGIHLDPMLMLTWAFVIIMLLTVGLIYEWLQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9572..9917
location: region:9572-9917:1
so has part: feature:9572-9917:1:exon

NP_740225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9572-9917:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Arg
so part of: sequence
location: 9918..9987
location: region:9918-9987:1
so has part: feature:9918-9987:1:region

position:9918:1
position: 9918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9987:1
position: 9987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9918-9987:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: ND4L
so part of: sequence
location: 9988..10284
location: region:9988-10284:1
so has part: feature:9988-10284:1:exon
subclass of: SO_0000010

805669
type: Gene
SIO_000068: ncbigene

position:9988:1
position: 9988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10284:1
position: 10284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9988-10284:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTHILFTISTAFMLGLSGLTFNRTHLLSALLCLEGMMLSLFIALAMWCSQNETMMFSSTPLLLLALSACEAGLGLSLLVATSRTHGSDHLKNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9988..10284
location: region:9988-10284:1
so has part: feature:9988-10284:1:exon

NP_740226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9988-10284:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: ND4
so part of: sequence
location: 10278..11652
location: region:10278-11652:1
so has part: feature:10278-11652:1:exon
subclass of: SO_0000010

805671
type: Gene
SIO_000068: ncbigene

position:10278:1
position: 10278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11652:1
position: 11652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10278-11652:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11652,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKLLIPTIMLFPTIWVLSPKWLWSITTAHSLMIATLSLTLFKYYSTTPWSNLNYMMATDMISTPLIVLTCWLLPLMILASQNHISPEPINRQRSYITLLVSLQTLLIMAFSATEIILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLYLYNTAGSLSIISMNLISIHPDTWANTFLWVACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMIRMTIILEPTTKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYSSVSHMGLVASGILIQTPWGFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQIIMPLMATWWLIMSLANMALPPLPNLMGELMIMISMFNWSAWTILLTGTGTLITAGYSLYLFVSSQRGPTSNNSSMEPSHTREHLLLTLHIIPVLLLMAKPELIWGWCW
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10278..11652
location: region:10278-11652:1
so has part: feature:10278-11652:1:exon

NP_740227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10278-11652:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-His
so part of: sequence
location: 11653..11721
location: region:11653-11721:1
so has part: feature:11653-11721:1:region

position:11653:1
position: 11653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11721:1
position: 11721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11653-11721:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11722..11787
location: region:11722-11787:1
so has part: feature:11722-11787:1:region

position:11722:1
position: 11722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11787:1
position: 11787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11722-11787:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11790..11861
location: region:11790-11861:1
so has part: feature:11790-11861:1:region

position:11790:1
position: 11790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11861:1
position: 11861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11790-11861:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: ND5
so part of: sequence
location: 11862..13703
location: region:11862-13703:1
so has part: feature:11862-13703:1:exon
subclass of: SO_0000010

805677
type: Gene
SIO_000068: ncbigene

position:11862:1
position: 11862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13703:1
position: 13703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11862-13703:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MSIPQLSQMFLTCLSLTIIILALPIILSIMFKPLNNWPHYVKNAVKLSFLVSLIPSLMCLNLNLQSFTIYYRWLLIPPTEINISFQFDQYSMIFMTIALYVTWSILEFAIYYMQTDILINRFFKYLLTFLIAMLILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRADANMAALQAVIYNRVGDIGLMLSMSWLLINTNSWDIQQLFILTKNMDMTLPAAGLLLAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLIENNNNILTAALCLGAITTLFTATCALTQNDIKKIVAFSTSSQLGLMMVAIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGIHKTLPLTSSCLTIGSLALMGTPFLAGFFSKDAIIEALNTSNLNAWALMLTLIATSFTAVYSLRIIYFVLMNNPRTLPLSPINENNPLIANPIKRLAWGSIVAGLILCQYILPNKTQMLTMPPTLKLTGLIVSLLGLITALELASMTNKQIKISATKLTHNFSNMLGFYPHITHRLMSKLPLTLGQVFATQTSDQLWMEKLGPKGIAHAQLLTTQKITHAHKGLIKTYLSITVLSLFVIMLLIMFI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11862..13703
location: region:11862-13703:1
so has part: feature:11862-13703:1:exon

NP_740228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11862-13703:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: ND6
so part of: sequence
location: complement(13699..14202)
location: region:13699-14202:-1
so has part: feature:13699-14202:-1:exon
subclass of: SO_0000010

805674
type: Gene
SIO_000068: ncbigene

position:13699:-1
position: 13699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14202:-1
position: 14202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13699-14202:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MVLMVVFSVIFLVSLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSVILFLIYLGGMLVVFAYSAALAAEPYPPAWGSWEVFSYVLGYMVLVIMVWAVFVGDFGVLDDIEGHFGAVRRYVGVAEVYNVGGYMLLVAGWVLLMALLVVLELTRGYSRGCLRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13699..14202)
location: region:13699-14202:-1
so has part: feature:13699-14202:-1:exon

NP_740229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13699-14202:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Glu
so part of: sequence
location: complement(14203..14271)
location: region:14203-14271:-1
so has part: feature:14203-14271:-1:region

position:14203:-1
position: 14203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14271:-1
position: 14271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14203-14271:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 178879
gene: CYTB
so part of: sequence
location: 14275..15415
location: region:14275-15415:1
so has part: feature:14275-15415:1:exon
subclass of: SO_0000010

805676
type: Gene
SIO_000068: ncbigene

position:14275:1
position: 14275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15415:1
position: 15415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14275-15415:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 178879
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15415,aa:TERM)
transl table: 2
product: cytochrome b
translation: MAITRKTHPLAKIINSAFIDLPAPSNISSWWNMGSLLGMCLMSQIITGLFLAMHYVSDISSAFSSVAHICRDVNYGWLIRNFHANGASLFFICIYLHIARGLYYGSYLYMETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGDTLVQWIWGGFSVDKPTLTRFFAFHFILPFAIAAASLVHIVFLHETGSNNPMGINSNADKIPFHPYYTFKDLLGFIILLLIIISLALLSPNLLNDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIIILMLVPFLHTSKIRSATFRPLFKITLWILAADVLILTWIGGQPVEDPYITIGQVASILYFLIFLVFMPMSGWIENKMLNRN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14275..15415
location: region:14275-15415:1
so has part: feature:14275-15415:1:exon

NP_740230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14275-15415:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Thr
so part of: sequence
location: 15416..15486
location: region:15416-15486:1
so has part: feature:15416-15486:1:region

position:15416:1
position: 15416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15486:1
position: 15486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15416-15486:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 178879
product: tRNA-Pro
so part of: sequence
location: complement(15486..15554)
location: region:15486-15554:-1
so has part: feature:15486-15554:-1:region

position:15486:-1
position: 15486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15554:-1
position: 15554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15486-15554:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 178879
note: control region
so part of: sequence
location: 15555..16627
location: region:15555-16627:1
so has part: feature:15555-16627:1:region

position:15555:1
position: 15555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15555-16627:1:region