Erwinia persicina strain Cp2 plasmid p_Cp2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia.
Submitted (24-AUG-2021) Department of Grassland Conservation, Pratacultural College, Gansu Agricultural University, Anning District, Lanzhou 730070, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP082142.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 22-JUN-2019\nAssembly Method :: SOAPdenovo v. 2.04; GapCloser v. 1.12\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/29/2023 04:40:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,459\nCDSs (total) :: 4,345\nGenes (coding) :: 4,286\nCDSs (with protein) :: 4,286\nGenes (RNA) :: 114\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 10\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 35 of 59\nPseudo Genes (incomplete) :: 27 of 59\nPseudo Genes (internal stop) :: 11 of 59\nPseudo Genes (multiple problems) :: 12 of 59\nPseudo Genes (short protein) :: 1 of 59\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017346710.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019920694.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011092000.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007178720.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011113994.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014598182.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017900990.1
COORDINATES: similar to AA sequence:RefSeq:WP_013202760.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011614926.1
COORDINATES: similar to AA sequence:RefSeq:WP_001493446.1
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_005164455.1
COORDINATES: similar to AA sequence:RefSeq:WP_004386270.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_017801780.1
COORDINATES: similar to AA sequence:RefSeq:WP_004716861.1
COORDINATES: similar to AA sequence:RefSeq:WP_002716195.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018041879.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011093319.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006122035.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014598218.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012440521.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011078060.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122026.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802285.1
COORDINATES: similar to AA sequence:RefSeq:WP_010247916.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011234848.1
COORDINATES: similar to AA sequence:RefSeq:WP_010247910.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014830074.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014543304.1
COORDINATES: similar to AA sequence:RefSeq:WP_014543305.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_013196246.1
COORDINATES: similar to AA sequence:RefSeq:WP_010247149.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008106169.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011095625.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010670659.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013196483.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015252411.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015179085.1
COORDINATES: similar to AA sequence:RefSeq:WP_009406418.1
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF017758.2
COORDINATES: similar to AA sequence:RefSeq:WP_006049889.1
COORDINATES: protein motif:HMM:NF022590.2
COORDINATES: similar to AA sequence:RefSeq:WP_008102020.1
COORDINATES: similar to AA sequence:RefSeq:WP_009087185.1
COORDINATES: similar to AA sequence:RefSeq:WP_013202356.1
COORDINATES: similar to AA sequence:RefSeq:WP_006175081.1
COORDINATES: similar to AA sequence:RefSeq:WP_017441342.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199943.1
COORDINATES: similar to AA sequence:RefSeq:WP_007956350.1
COORDINATES: similar to AA sequence:RefSeq:WP_010244568.1
COORDINATES: similar to AA sequence:RefSeq:WP_015222925.1
COORDINATES: protein motif:HMM:NF013473.2
GO:0005351 - carbohydrate:proton symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_004851222.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013357075.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008924793.1
COORDINATES: similar to AA sequence:RefSeq:WP_011093151.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_002437803.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_006328338.1
GO:0016407 - acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019098535.1
COORDINATES: similar to AA sequence:RefSeq:WP_015378828.1
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003446065.1
COORDINATES: protein motif:HMM:NF012635.2
COORDINATES: similar to AA sequence:RefSeq:WP_006319199.1
COORDINATES: similar to AA sequence:RefSeq:WP_012146846.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017893978.1
GO:0015473 - fimbrial usher porin activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013814939.1
COORDINATES: similar to AA sequence:RefSeq:WP_004938731.1
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013512050.1
GGDEF domain-containing phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_013036331.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009351639.1
COORDINATES: similar to AA sequence:RefSeq:WP_004933156.1
4-hydroxyphenylacetate 3-monooxygenase, reductase component
COORDINATES: similar to AA sequence:RefSeq:WP_000801462.1
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
COORDINATES: similar to AA sequence:RefSeq:WP_020885311.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
4-hydroxyphenylacetate catabolism regulatory protein HpaA
COORDINATES: similar to AA sequence:RefSeq:WP_017371575.1
GO:0018802 - 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005224930.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_008814416.1
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:NP_460076.1
GO:0008687 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase activity [Evidence IEA]; GO:0008198 - ferrous iron binding [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
3,4-dihydroxyphenylacetate 2,3-dioxygenase
COORDINATES: similar to AA sequence:RefSeq:NP_460075.1
GO:0018480 - 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity [Evidence IEA]
GO:1901023 - 4-hydroxyphenylacetate catabolic process [Evidence IEA]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_017349078.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017349077.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
homoprotocatechuate degradation operon regulator HpaR
COORDINATES: protein motif:HMM:NF022798.2
COORDINATES: similar to AA sequence:RefSeq:WP_004905776.1
COORDINATES: similar to AA sequence:RefSeq:WP_013367213.1
COORDINATES: similar to AA sequence:RefSeq:WP_004151810.1
COORDINATES: similar to AA sequence:RefSeq:YP_005225653.1
COORDINATES: similar to AA sequence:RefSeq:WP_004942062.1
COORDINATES: similar to AA sequence:RefSeq:WP_009090124.1
COORDINATES: similar to AA sequence:RefSeq:WP_005120221.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005120223.1
GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0048473 - D-methionine transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013202085.1
GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004860786.1
COORDINATES: similar to AA sequence:RefSeq:WP_004940693.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004940691.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016927777.1
COORDINATES: similar to AA sequence:RefSeq:WP_017801107.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009111473.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013202003.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_014341720.1
COORDINATES: similar to AA sequence:RefSeq:WP_014541847.1
COORDINATES: similar to AA sequence:RefSeq:WP_009351627.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017799925.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005225759.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006809664.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260941.1
COORDINATES: similar to AA sequence:RefSeq:WP_015842274.1
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012451.2
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015842272.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105960.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802205.1
COORDINATES: similar to AA sequence:RefSeq:WP_013511849.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013511693.1
COORDINATES: similar to AA sequence:RefSeq:WP_013202078.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
putative FMN-dependent luciferase-like monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_008461423.1
COORDINATES: similar to AA sequence:RefSeq:WP_016536357.1
COORDINATES: similar to AA sequence:RefSeq:WP_017798932.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
TIGR04028 family ABC transporter substrate-binding protein