'Nostoc azollae' 0708 plasmid pAzo02, complete sequence.
type: Entry
definition: 'Nostoc azollae' 0708 plasmid pAzo02, complete sequence.
sequence version: NC_014250.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NC_014250.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598476
keyword: RefSeq
source: 'Nostoc azollae' 0708
organism: 'Nostoc azollae' 0708
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Trichormus.
reference: 1
references: 20628610
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002061.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4084143\nSource DNA and organism available from Birgitta Bergman\n(Birgitta.Bergman@botan.su.se)\nContacts: Birgitta Bergman (Birgitta.Bergman@botan.su.se)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-PGF\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: 'Nostoc azollae' 0708\nGOLD Stamp ID :: Gi03474\nGreengenes ID :: 708\nIsolation Site :: water fern Azolla commonly known as\n duckweed\nOxygen Requirement :: Aerobe\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Host\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 12:07:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,758\nCD…

sequence
subclass of: SO_0000155
sequence length: 21875
topology: circular
so has quality: SO_0000988
location: 1..21875
location: region:1-21875:1
RO_0002162: 551115

NC_014250
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598476
type: BioSample
SIO_000068: biosample

1
title: Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium
author: Ran, L.
author: Larsson, J.
author: Vigil-Stenman, T.
author: Nylander, J.A.
author: Ininbergs, K.
author: Zheng, W.W.
author: Lapidus, A.
author: Lowry, S.
author: Haselkorn, R.
author: Bergman, B.
journal: PLoS One 5 (7), e11486 (2010)
pubmed: 20628610
comments: Erratum:[PLoS One. 2010;5(9) doi: 10.1371/annotation/835c5766-5128-41c4-b636-adfe0c503103] Publication Status: Online-Only

20628610
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of plasmid2 of 'Nostoc azollae' 0708
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Cheng, J.-F.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Lowry, S.
author: Clum, A.
author: Sun, H.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ovchinnikova, G.
author: Bergman, B.
author: Woyke, T.
journal: Unpublished

3
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Cheng, J.-F.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Lowry, S.
author: Clum, A.
author: Sun, H.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ovchinnikova, G.
author: Bergman, B.
author: Woyke, T.
journal: Submitted (03-JUN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21875:1
position: 21875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21875:1:source
so part of: sequence
organism: 'Nostoc azollae' 0708
mol type: genomic DNA
strain: 0708
plasmid: pAzo02

551115
type: Taxonomy
SIO_000068: taxonomy

AAZO_RS25450
type: Gene
subclass of: SO_0000704
RO_0002162: 551115
locus tag: AAZO_RS25450
old locus tag: Aazo_5344
so part of: sequence
location: complement(481..1320)
location: region:481-1320:-1
so has part: feature:481-1320:-1:exon
subclass of: SO_0000010

position:481:-1
position: 481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1320:-1
position: 1320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:481-1320:-1:exon

AAZO_RS25450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 551115
locus tag: AAZO_RS25450
old locus tag: Aazo_5344
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIGKQTKGRGFYKLLDYLYNSKDAKLIGGNMSGRNSRELTREFRLSRQLNPDAERVVYHVSLSAAKNDVISENKWCEIGNRYMKEMGFDANQFAIFRHTNTDHDHIHIVASRIRMDTAKVVHDSWDYLRSEKVLRQIEIDYDLVRVHGSRERLDRTQSIGQFRRIKREQEEYEMGKRDTLPEPSIKELVQQKVYNLSIDHPQMPILIMRLQQADISVRIGFTRNGKSKGISYQKDGIAFSGTQLGPAYTFRGLQKYLRIDYQSQRDDVHIEYLLDNPLK
SIO_010081: AAZO_RS25450
subclass of: SO_0000673
so part of: AAZO_RS25450
location: complement(481..1320)
location: region:481-1320:-1
so has part: feature:481-1320:-1:exon

WP_013193318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:481-1320:-1:exon

AAZO_RS25455
type: Gene
subclass of: SO_0000704
RO_0002162: 551115
locus tag: AAZO_RS25455
old locus tag: Aazo_5345
so part of: sequence
location: complement(1295..1660)
location: region:1295-1660:-1
so has part: feature:1295-1660:-1:exon
subclass of: SO_0000010

position:1295:-1
position: 1295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1660:-1
position: 1660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1295-1660:-1:exon

AAZO_RS25455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 551115
locus tag: AAZO_RS25455
old locus tag: Aazo_5345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016864015.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MRLSDIELDLLRIKSRDAGMSASELMRRNGLLQPLPKRLSKISLQIYLELGQIGNSLNQLVDVIKIAIEMGRTPPVHLELLEKLLEVLHQCRRDIAQVDTKGDNDWEEEEENTDDWETDEG
SIO_010081: AAZO_RS25455
subclass of: SO_0000673
so part of: AAZO_RS25455
location: complement(1295..1660)
location: region:1295-1660:-1
so has part: feature:1295-1660:-1:exon

WP_228371829.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1295-1660:-1:exon

AAZO_RS25460
type: Gene
subclass of: SO_0000704
RO_0002162: 551115
locus tag: AAZO_RS25460
old locus tag: Aazo_5346
so part of: sequence
location: 2121..2531
location: region:2121-2531:1
so has part: feature:2121-2531:1:exon
subclass of: SO_0000010

position:2121:1
position: 2121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2531:1
position: 2531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2121-2531:1:exon

AAZO_RS25460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 551115
locus tag: AAZO_RS25460
old locus tag: Aazo_5346
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKYQESEVTTKNKTDNGISLLKEQKRKEQDDVSDRTTVRKMRRYIAKLTSSKYGYTYDEVSEMLKGLGINLSGEKIEHLIGELNKSNSHHQKVKLGEENNVLKSTITTAKQPAVKANSERSIDQTVKSGNGKTKR
SIO_010081: AAZO_RS25460
subclass of: SO_0000673
so part of: AAZO_RS25460
location: 2121..2531
location: region:2121-2531:1
so has part: feature:2121-2531:1:exon

WP_013193320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2121-2531:1:exon

AAZO_RS25470
type: Gene
subclass of: SO_0000704
RO_0002162: 551115
locus tag: AAZO_RS25470
old locus tag: Aazo_5348
so part of: sequence
location: complement(3332..6841)
location: region:3332-6841:-1
so has part: feature:3332-6841:-1:exon
subclass of: SO_0000010

position:3332:-1
position: 3332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6841:-1
position: 6841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3332-6841:-1:exon

AAZO_RS25470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 551115
locus tag: AAZO_RS25470
old locus tag: Aazo_5348
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016864018.1
GO function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PriCT-2 domain-containing protein
translation: MINNHHALQLNLEQTPKLKFAVNTYGRNKDWDFKKLAANFQDKEGTIENVKEHIKAGHAVCASLLGNKWRSKANVIGSQWLLLDIDNSDMARDADGKLIKDNYGNYIKVYKHQLTIEEALTHPFIRKYCALIYTTASHQPDWHRFRLIFLLPEYVEGADIVETCIHLLMQHLPHDRACRDASRVFYGNTEAEFLLVNPEASLPNEWVREAITITQQERSEYQLHIQEIELRHKKWREISLIEGWDIDQLIKNALSLIPPRTLGSGNYDECRQVLMALVNHYGASEAEIIAEKWSPSIKGTTWNIRAKIRSFRRGGITIGTLFHIAKEYGFHFPKRQYEVSENYKGLTSPQECELGQFREDLTSFQNLLKQALIPFVKGAKGFSTPILRGAQFVREEPKLEINSPIRKFIVYKPGNIPYKNEFIDDIYIECQAGEHIAAWVEAISKGWTQILDNSHPGQGKSHNAGKLTAAMFGTDKLIYQDANHRNPSTLPIEINFVDLPVRHNGLKIDTNRTTPTGANFLVQPKVGETPDTDSNCRRTSLFGAFRDKNFASLDFEESAISPICKGCINHNQCCFTYGDGFGFRFLKQIVIQNYAEIRAHPDSTPVVLTNGANEPFTVGRIWEEAGSLIKPVRSIEVRLQDFDTTIGSLIAGGLPTEEWVKLQQYLPVLRSLLNGDIKPNSRYGFNDAELREQLGEFPSGIDIKIIRQILQPNLEFLGDLDSVDINGDQQLRKSAAAHFAAKRVAKESAQQAGKQFFDLPNYWLPDFLEAWKGEGSLAYKWGILTIYRPNTKYSELAYSAQFNIYLDATIRPEHLKLKLGYNDSILVIQQSRPDYSNLRVVNVIGLGKLPKKRSSSLTERVLSLKETFRKIHKKLGIIEWKQLAIKTEDYIEYSHFVDGRGVNRFSECDVIASFGIPYQNIGVVAAHIKVMTDEAVHVGNLEGILQKYLTELIRGEIIQEIGRLRAHRRCNEELIFYFCADYDLSFLLDELPGVKLEVIDACTLCTEAGSRDQQTGHAIIKAFNQLLESQQKICQTAIAKIINTTQGWVSRFTQRWGGWVRFKKLLLLLLDSFHSDSNKNLTDLSDDEIWFAREYFPTLLDKARSLPEDPIEYIAEVTLTVTKPVMSPILRHFSPAVKTGLLLIVLSSLATEVYLHFLLVQAVTNPIVI
SIO_010081: AAZO_RS25470
subclass of: SO_0000673
so part of: AAZO_RS25470
location: complement(3332..6841)
location: region:3332-6841:-1
so has part: feature:3332-6841:-1:exon

WP_013193322.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3332-6841:-1:exon

AAZO_RS32650
type: Gene
subclass of: SO_0000704
RO_0002162: 551115
locus tag: AAZO_RS32650
old locus tag: Aazo_5349
so part of: sequence
location: complement(7374..7535)
location: region:7374-7535:-1
so has part: feature:7374-7535:-1:exon
subclass of: SO_0000010

position:7374:-1
position: 7374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7535:-1
position: 7535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7374-7535:-1:exon

AAZO_RS32650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 551115
locus tag: AAZO_RS32650
old locus tag: Aazo_5349
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016863727.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKYKGKRVNVTFPVEVYERVAGLASDETRTVSQMIVVLCQEAMVAREKKYEK
SIO_010081: AAZO_RS32650
subclass of: SO_0000673
so part of: AAZO_RS32650
location: complement(7374..7535)
location: region:7374-7535:-1
so has part: feature:7374-7535:-1:exon

WP_013193323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7374-7535:-1:exon

AAZO_RS40720
type: Gene
subclass of: SO_0000704
RO_0002162: 551115
locus tag: AAZO_RS40720
pseudo: true
so part of: sequence
location: complement(<9407..9523)
location: region:9407-9523:-1
so has part: feature:9407-9523:-1:exon
subclass of: SO_0000010

position:9407:-1
position: 9407
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:9523:-1
position: 9523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9407-9523:-1:exon

AAZO_RS40720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 551115
locus tag: AAZO_RS40720
inference: COORDINATES: protein motif:HMM:NF020305.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: AAZO_RS40720
subclass of: SO_0000673
so part of: AAZO_RS40720
location: complement(<9407..9523)
location: region:9407-9523:-1
so has part: feature:9407-9523:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9407-9523:-1:exon

AAZO_RS25485
type: Gene
subclass of: SO_0000704
RO_0002162: 551115
locus tag: AAZO_RS25485
old locus tag: Aazo_5355
so part of: sequence
location: 12936..13625
location: region:12936-13625:1
so has part: feature:12936-13625:1:exon
subclass of: SO_0000010

position:12936:1
position: 12936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13625:1
position: 13625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12936-13625:1:exon

AAZO_RS25485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 551115
locus tag: AAZO_RS25485
old locus tag: Aazo_5355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011320287.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heme-copper oxidase subunit III
translation: MTKNKNYQSINRGVIHIDESPIALEKYRKYLPLWLKRYLPIRGGLSQDHHGKAIFGFTVFLLSESIVFLSLIFTYLGLRLIHSGNWLPRGISGPQLYTLVVINTVVLLSSSFVIQSAENSLRHGELKKFRLLLFMTISMGIFFLIGQGTEWNKLDFRLSTGLVGSTFYLLTGFHGLHVLIGVILQVIMLSRSFIPGNYDKGHFGVSATTLFWHFVDIVWVFLFSLLYLW
SIO_010081: AAZO_RS25485
subclass of: SO_0000673
so part of: AAZO_RS25485
location: 12936..13625
location: region:12936-13625:1
so has part: feature:12936-13625:1:exon

WP_013193326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12936-13625:1:exon

AAZO_RS25490
type: Gene
subclass of: SO_0000704
RO_0002162: 551115
locus tag: AAZO_RS25490
old locus tag: Aazo_5356
so part of: sequence
location: 15850..18669
location: region:15850-18669:1
so has part: feature:15850-18669:1:exon
subclass of: SO_0000010

position:15850:1
position: 15850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18669:1
position: 18669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15850-18669:1:exon

AAZO_RS25490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 551115
locus tag: AAZO_RS25490
old locus tag: Aazo_5356
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015182836.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation-transporting P-type ATPase
translation: MNSNFHIWTLTPRDVYQNLRTTDQGISEIEANLRLKESGYNELPEPERRPLILRFTDQLTHFMALLLWIAGILAFVSQTPELGWAIWAVIWINAVFSFWQEFQAEKALAALRKVLPLQAKVYRDRKLCVIPSRELVSGDLVQLEEGDRISADVRIIKSQSLYVDMSVLTGESVAVPRFCEAITTENIHISEANNLVFAGSTIAAGQGRAVVYATGRHTEFGHVAHLTTNVKRETSTLEVEISRVVNIITIIALSMGVIIFLLTKFLGGMELKESFIFATGIIVAFVPEGLLPTVSLALAISVKRMATQNALVRRLSAVETLSATTIICTDKTGTLTKNEITVCQLWIPNTHINVTGVGYEPKGKVEIISPKYKSHVQLLLAGAALCSNAQLNHPRNSNQWLGSGDPTEIALLVAAIKAGLKLEELQHQAPRIREVPFDSHRRMMTVLLEGHLQLDNTGISQYLVFSKGATLDVLQHSQYLWDADRKLELTPTQREEIVVANDKLASQGYRVIGVAINQGGAELKQLDNNLLERDLTFLGLVAMIDPPRPEVANAIALCHRAGIQVTMITGDYGLTAAAIAQKIGLVKGKARIITGEELGHLSDTQLRQILDKNKTNLVFARVMPEQKLRLVEGYKNLGHVVAVTGDGVNDAPALRAANIGIAMGSTGTDIAREAADIILIDDNFATIISAIEEGRTVYQNIRKFMTYILASNMAEFLPFLAMVFLKLPPMLGILQILAIDLGTDILPALALGAEKPEAGSMELPPRGKSQPLLNSSLLLRAYCFLGLLEGLVGITGFLLVWWMWGYDITELQAIRLSIISHSADVATMAIYNQATTMTLAVIVACQDGNVFACRSEDVSILRLGIFSNHLIWIGITIEWLLLLFIIYSPTLQKIFATAPLTLSYWIMLPICPLLILIADELQKRTIIQIKRKKTNNDKI
SIO_010081: AAZO_RS25490
subclass of: SO_0000673
so part of: AAZO_RS25490
location: 15850..18669
location: region:15850-18669:1
so has part: feature:15850-18669:1:exon

WP_013193327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15850-18669:1:exon