'Nostoc azollae' 0708 plasmid pAzo01, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Trichormus.
Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium
Erratum:[PLoS One. 2010;5(9) doi: 10.1371/annotation/835c5766-5128-41c4-b636-adfe0c503103] Publication Status: Online-Only
Complete sequence of plasmid1 of 'Nostoc azollae' 0708
Submitted (03-JUN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002060.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4084143\nSource DNA and organism available from Birgitta Bergman\n(Birgitta.Bergman@botan.su.se)\nContacts: Birgitta Bergman (Birgitta.Bergman@botan.su.se)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-PGF\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: 'Nostoc azollae' 0708\nGOLD Stamp ID :: Gi03474\nGreengenes ID :: 708\nIsolation Site :: water fern Azolla commonly known as\n duckweed\nOxygen Requirement :: Aerobe\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Host\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 12:07:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,758\nCDSs (total) :: 5,700\nGenes (coding) :: 4,526\nCDSs (with protein) :: 4,526\nGenes (RNA) :: 58\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 1,174\nCDSs (without protein) :: 1,174\nPseudo Genes (ambiguous residues) :: 0 of 1,174\nPseudo Genes (frameshifted) :: 625 of 1,174\nPseudo Genes (incomplete) :: 456 of 1,174\nPseudo Genes (internal stop) :: 885 of 1,174\nPseudo Genes (multiple problems) :: 659 of 1,174\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007725626.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016951334.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007308599.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020393.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
element excision factor XisH family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015364238.1
COORDINATES: similar to AA sequence:RefSeq:WP_015078942.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012493.2
C-terminal helicase domain-containing protein
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015217634.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217633.1
GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015079337.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186410.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186395.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015186394.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186393.1
COORDINATES: protein motif:HMM:NF013213.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953805.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006196494.1
COORDINATES: protein motif:HMM:NF012651.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015364318.1
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: protein motif:HMM:NF014786.2
COORDINATES: protein motif:HMM:NF012915.2
COORDINATES: protein motif:HMM:NF020811.2
COORDINATES: protein motif:HMM:NF025000.2
COORDINATES: similar to AA sequence:RefSeq:WP_009630407.1
COORDINATES: similar to AA sequence:RefSeq:WP_015162929.1
two-component system sensor histidine kinase RppB
COORDINATES: similar to AA sequence:RefSeq:WP_015113204.1
two-component system response regulator RppA
COORDINATES: similar to AA sequence:RefSeq:WP_012264998.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016949713.1
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF019301.2
COORDINATES: similar to AA sequence:RefSeq:WP_011320287.1
COORDINATES: similar to AA sequence:RefSeq:WP_011320288.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_016949704.1
COORDINATES: similar to AA sequence:RefSeq:WP_015175148.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408471.1
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF015715.2
COORDINATES: similar to AA sequence:RefSeq:WP_012408474.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]; GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF020701.2
COORDINATES: similar to AA sequence:RefSeq:WP_012409550.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016869962.1
COORDINATES: similar to AA sequence:RefSeq:WP_011317744.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012409547.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314126.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408830.1
S-layer homology domain-containing protein
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_012409532.1
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF020305.2
TnsA endonuclease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010999631.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039191.1