Tomato leaf curl Kumasi virus segment A, complete sequence.
type: Entry
definition: Tomato leaf curl Kumasi virus segment A, complete sequence.
sequence version: NC_011096.1
sequence date: 2018-08-13
sequence: sequence
division: VRL
label: NC_011096.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Tomato leaf curl Kumasi virus
organism: Tomato leaf curl Kumasi virus
taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from EU847739.\n\nOn Mar 28, 2016 this sequence version replaced NC_012205.1.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 2794
topology: circular
so has quality: SO_0000988
location: 1..2794
location: region:1-2794:1
RO_0002162: 548915

NC_011096
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: First Report and Molecular Characterization of DNA A of Three Distinct Begomoviruses Associated with Tomato Leaf Curl Disease in Ghana
author: Osei, M.K.
author: Akromah, R.
author: Shih, S.L.
author: Lee, L.M.
author: Green, S.K.
journal: Plant Dis. 92 (11), 1585 (2008)

2
title: Direct Submission
journal: Submitted (31-JUL-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Shih, S.L.
author: Osei, M.K.
author: Akromah, R.
author: Lee, L.M.
author: Green, S.K.
journal: Submitted (23-JUN-2008) Virology Unit, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Taiwan, Republic of China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2794:1
position: 2794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-2794:1:source
so part of: sequence
organism: Tomato leaf curl Kumasi virus
mol type: genomic DNA
host: tomato
segment: A
clone: GOTB2-2
country: Ghana: Kumasi

548915
type: Taxonomy
SIO_000068: taxonomy

TLCKuV_gp1
type: Gene
subclass of: SO_0000704
RO_0002162: 548915
gene: V2
locus tag: TLCKuV_gp1
so part of: sequence
location: 166..516
location: region:166-516:1
so has part: feature:166-516:1:exon
subclass of: SO_0000010

6654195
type: Gene
SIO_000068: ncbigene

position:166:1
position: 166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:516:1
position: 516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166-516:1:exon

TLCKuV_gp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548915
gene: V2
locus tag: TLCKuV_gp1
codon start: 1
product: pre-coat protein
translation: MWDPLLNEFPDSVHGFRCMLAIKYLQLLEEEYEPNTLGHDLVRDLISVVRAKNYVEATRRYNNFHARLEGASTAELRQPLRQPCCCPHCPRHKQASFVDVPAHVSQAKNVQDVQNS
SIO_010081: TLCKuV_gp1
subclass of: SO_0000673
so part of: TLCKuV_gp1
location: 166..516
location: region:166-516:1
so has part: feature:166-516:1:exon

YP_002117523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:166-516:1:exon

TLCKuV_gp2
type: Gene
subclass of: SO_0000704
RO_0002162: 548915
gene: V1
locus tag: TLCKuV_gp2
so part of: sequence
location: 326..1099
location: region:326-1099:1
so has part: feature:326-1099:1:exon
subclass of: SO_0000010

6654193
type: Gene
SIO_000068: ncbigene

position:326:1
position: 326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1099:1
position: 1099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:326-1099:1:exon

TLCKuV_gp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548915
gene: V1
locus tag: TLCKuV_gp2
codon start: 1
product: coat protein
translation: MSKRPGDIIISTPVSKVRRRLNFDSPYASRAAVPTVRGISKRRSWTYRPMYRKPRMYRMYRTPDIPRGCEGPCKVQSYEQRDDVKHVGIVRCVSDVTRGSGLTHRVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGSPSDFGQIFNMFDNEPSTATIKNDLRDRYQVLRKFSATVIGGPSGCKEQALVKRFFKVNNHVVYNHQEEAKYANHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN
SIO_010081: TLCKuV_gp2
subclass of: SO_0000673
so part of: TLCKuV_gp2
location: 326..1099
location: region:326-1099:1
so has part: feature:326-1099:1:exon

YP_002117524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:326-1099:1:exon

TLCKuV_gp3
type: Gene
subclass of: SO_0000704
RO_0002162: 548915
gene: C3
locus tag: TLCKuV_gp3
so part of: sequence
location: complement(1096..1500)
location: region:1096-1500:-1
so has part: feature:1096-1500:-1:exon
subclass of: SO_0000010

6654194
type: Gene
SIO_000068: ncbigene

position:1096:-1
position: 1096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1500:-1
position: 1500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1096-1500:-1:exon

TLCKuV_gp3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548915
gene: C3
locus tag: TLCKuV_gp3
codon start: 1
product: replication enhancement protein
translation: MDSRTGELITAHQARNGVFIWEIQNPLYFKITNHDERPFNYQHDIISVQIRFNHNLRKALGIHKCFLNFKVWTSLRPQTGRFLRVFRVQVLKYLDNLGVISINTIIRAVDHVLYNVLEGTNCVLEQHEIKFNIY
SIO_010081: TLCKuV_gp3
subclass of: SO_0000673
so part of: TLCKuV_gp3
location: complement(1096..1500)
location: region:1096-1500:-1
so has part: feature:1096-1500:-1:exon

YP_002117525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1096-1500:-1:exon

TLCKuV_gp4
type: Gene
subclass of: SO_0000704
RO_0002162: 548915
gene: C2
locus tag: TLCKuV_gp4
so part of: sequence
location: complement(1241..1648)
location: region:1241-1648:-1
so has part: feature:1241-1648:-1:exon
subclass of: SO_0000010

6654197
type: Gene
SIO_000068: ncbigene

position:1241:-1
position: 1241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1648:-1
position: 1648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1241-1648:-1:exon

TLCKuV_gp4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548915
gene: C2
locus tag: TLCKuV_gp4
codon start: 1
product: transcriptional activation protein
translation: MRPSSPSTSHCTQVPIKVQHRIAKKKVVRRKRVDLECGCSYFIHINCSNHGFTHRGTHHCASSSEWRFYLGDTKSPVFQDNQPRRETVQLPTRHNLSSNQVQPQPAEGVGDSQVFSELQSMDELTPSDWSFLKGI
SIO_010081: TLCKuV_gp4
subclass of: SO_0000673
so part of: TLCKuV_gp4
location: complement(1241..1648)
location: region:1241-1648:-1
so has part: feature:1241-1648:-1:exon

YP_002117526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1241-1648:-1:exon

TLCKuV_gp5
type: Gene
subclass of: SO_0000704
RO_0002162: 548915
gene: C1
locus tag: TLCKuV_gp5
so part of: sequence
location: complement(1557..2636)
location: region:1557-2636:-1
so has part: feature:1557-2636:-1:exon
subclass of: SO_0000010

6654196
type: Gene
SIO_000068: ncbigene

position:1557:-1
position: 1557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2636:-1
position: 2636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1557-2636:-1:exon

TLCKuV_gp5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548915
gene: C1
locus tag: TLCKuV_gp5
codon start: 1
product: replication-associated protein
translation: MAPPKRFKISAKNFFLTYPKCSLSKEETLQQLQGLDTPTNKKYIKICKELHENGEPHLHVLLQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAKAINSGSKPEALAILKELAPKDFVLQFHNLNNNLDRIFMAPPEPYISPFLSSSFNQVPEELEEWVSENVRSAAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEVKNAPLKAWAIKNATFITLHEPLYTSADQSPAPHREEESSEA
SIO_010081: TLCKuV_gp5
subclass of: SO_0000673
so part of: TLCKuV_gp5
location: complement(1557..2636)
location: region:1557-2636:-1
so has part: feature:1557-2636:-1:exon

YP_002117527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1557-2636:-1:exon

TLCKuV_gp6
type: Gene
subclass of: SO_0000704
RO_0002162: 548915
gene: C4
locus tag: TLCKuV_gp6
so part of: sequence
location: complement(2177..2479)
location: region:2177-2479:-1
so has part: feature:2177-2479:-1:exon
subclass of: SO_0000010

6654198
type: Gene
SIO_000068: ncbigene

position:2177:-1
position: 2177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2479:-1
position: 2479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2177-2479:-1:exon

TLCKuV_gp6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548915
gene: C4
locus tag: TLCKuV_gp6
codon start: 1
product: C4 protein
translation: MASLISTCFSSSKANTSAQITDSSTWYPQPGQHISIQTFRELNPAPTSSPISIKTETPLNGESFRSMDDLQEGDNRQQTTLTPKQLTQAVSQKLLQYLKN
SIO_010081: TLCKuV_gp6
subclass of: SO_0000673
so part of: TLCKuV_gp6
location: complement(2177..2479)
location: region:2177-2479:-1
so has part: feature:2177-2479:-1:exon

YP_002117528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2177-2479:-1:exon