Corynebacterium aurimucosum ATCC 700975 plasmid pET44827, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion
Submitted (29-MAY-2008) Trost E., Center for Biotechnology, Bielefeld University, Universitaetsstrasse 25, Bielefeld, 33615, GERMANY
REFSEQ INFORMATION: The reference sequence is identical to\nFM164414.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 12:33:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,664\nCDSs (total) :: 2,595\nGenes (coding) :: 2,544\nCDSs (with protein) :: 2,544\nGenes (RNA) :: 69\nrRNAs :: 4, 3, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 21 of 51\nPseudo Genes (incomplete) :: 29 of 51\nPseudo Genes (internal stop) :: 6 of 51\nPseudo Genes (multiple problems) :: 4 of 51\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Corynebacterium nigricans
COORDINATES: similar to AA sequence:RefSeq:WP_010187845.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611184.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005276583.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012760.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005326060.1
COORDINATES: similar to AA sequence:RefSeq:WP_005323728.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024461.2
COORDINATES: similar to AA sequence:RefSeq:WP_010187834.1
COORDINATES: similar to AA sequence:RefSeq:WP_005326214.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_010187825.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187823.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_012468093.1
COORDINATES: protein motif:HMM:NF013522.2
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_016189760.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010187804.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187802.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006680457.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015453125.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187791.1
COORDINATES: similar to AA sequence:RefSeq:WP_005326132.1
COORDINATES: similar to AA sequence:RefSeq:WP_005326133.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_086558200.1
COORDINATES: similar to AA sequence:RefSeq:WP_018296872.1