Corynebacterium aurimucosum ATCC 700975 plasmid pET44827, complete sequence.
type: Entry
definition: Corynebacterium aurimucosum ATCC 700975 plasmid pET44827, complete sequence.
sequence version: NC_010813.1
sequence date: 2023-03-24
sequence: sequence
division: CON
label: NC_010813.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603064
keyword: RefSeq
source: Corynebacterium aurimucosum ATCC 700975
organism: Corynebacterium aurimucosum ATCC 700975
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
references: 20137072
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nFM164414.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 12:33:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,664\nCDSs (total) :: 2,595\nGenes (coding) :: 2,544\nCDSs (with protein) :: 2,544\nGenes (RNA) :: 69\nrRNAs :: 4, 3, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 21 of 51\nPseudo Genes (incomplete) :: 29 of 51\nPseudo Genes (internal stop) :: 6 of 51\nPseudo Genes (multiple problems) :: 4 of 51\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 29037
topology: circular
so has quality: SO_0000988
location: 1..29037
location: region:1-29037:1
RO_0002162: 548476

NC_010813
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603064
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion
author: Trost, E.
author: Gotker, S.
author: Schneider, J.
author: Schneiker-Bekel, S.
author: Szczepanowski, R.
author: Tilker, A.
author: Viehoever, P.
author: Arnold, W.
author: Bekel, T.
author: Blom, J.
author: Gartemann, K.H.
author: Linke, B.
author: Goesmann, A.
author: Puhler, A.
author: Shukla, S.K.
author: Tauch, A.
journal: BMC Genomics 11, 91 (2010)
pubmed: 20137072
comments: Publication Status: Online-Only

20137072
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Trost, E.
journal: Submitted (29-MAY-2008) Trost E., Center for Biotechnology, Bielefeld University, Universitaetsstrasse 25, Bielefeld, 33615, GERMANY

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29037:1
position: 29037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29037:1:source
so part of: sequence
organism: Corynebacterium aurimucosum ATCC 700975
mol type: genomic DNA
strain: DSM 44827; ATCC 700975
culture collection: ATCC:700975
type material: type strain of Corynebacterium nigricans
plasmid: pET44827

548476
type: Taxonomy
SIO_000068: taxonomy

CAURI_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00005
old locus tag: cauri_pET4482701
so part of: sequence
location: 1..951
location: region:1-951:1
so has part: feature:1-951:1:exon
subclass of: SO_0000010

31922605
type: Gene
SIO_000068: ncbigene

position:951:1
position: 951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-951:1:exon

CAURI_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00005
old locus tag: cauri_pET4482701
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187845.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MQPRDERRAKLEAVKELARRQEHDAAQELLQAQDVGYTSKLFVQALFPYRKAENNERVVETAQGIISVYSRRGLPYGKYPRLIMAYVITRAVENAGRLKEGKIDEQEARRVPLGHSMNHFLQAIGVLGRGTGGATGNLKNIREQILRIAGSTITVESDDGVHAQGSNTQILDGWNLWFDPRDPNQGSFIESELVLTEKFFNHIAESPIPIDLNVLRQLTKPRAMDLYIWLTLKQYWLAKNNREAYTFTWDMIAANFSTKELETSQDVASFRRNFKSAISDILKAWPEAGIGAGTDGVTVTRTAPSVQQKPPRPELD
SIO_010081: CAURI_RS00005
subclass of: SO_0000673
so part of: CAURI_RS00005
location: 1..951
location: region:1-951:1
so has part: feature:1-951:1:exon

WP_010187845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-951:1:exon

CAURI_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00015
old locus tag: cauri_pET4482703
so part of: sequence
location: 1660..2906
location: region:1660-2906:1
so has part: feature:1660-2906:1:exon
subclass of: SO_0000010

31922606
type: Gene
SIO_000068: ncbigene

position:1660:1
position: 1660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2906:1
position: 2906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1660-2906:1:exon

CAURI_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00015
old locus tag: cauri_pET4482703
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611184.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MPRKTYTERFKRDAVSLYESTPGATINAIASDLGVNRNSPRSWLDAFGTRTKTNANGEKVASLIAASDSATAASGLSDAERIRVLERENAKLREEREILRKAAKYFAEGDELVNRFRFVDDHRDLYEVKRLCQVLKINRSSYYAWKSAAPARRQRLVDDAVLGAQIKTTFNAENGCYGAKRVTAAINSDPVNDRGKGGRLNHKRTARLMRQMGLFGFTRKRRVKTTTSSKRAPRFPDLLQRRFTADRPNAVYVGDITYLPIADGSNMYLATVIDCYSRQLTGFAIADHMRTELVEEALTMARKVRGSLDGAIFHSDHGSVYTSDQYRRLCVRFGVTQSTGAIGTSADNSLAESFNASLKREVLQDESVFTSQLDCRQDVFRWCTRYNTKRLHSWCGYRSPNAFEDAGLATLTIAS
SIO_010081: CAURI_RS00015
subclass of: SO_0000673
so part of: CAURI_RS00015
location: join(1660..1984,1984..2906)
location: region:1660-2906:1
so has part: feature:1660-1984:1:exon
so has part: feature:1984-2906:1:exon

WP_100067413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1660-1984:1:exon

position:1984:1
position: 1984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1984-2906:1:exon

CAURI_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00020
old locus tag: cauri_pET4482704
so part of: sequence
location: complement(2907..3701)
location: region:2907-3701:-1
so has part: feature:2907-3701:-1:exon
subclass of: SO_0000010

31922607
type: Gene
SIO_000068: ncbigene

position:2907:-1
position: 2907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3701:-1
position: 3701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2907-3701:-1:exon

CAURI_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00020
old locus tag: cauri_pET4482704
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005276583.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: winged helix-turn-helix domain-containing protein
translation: MNLVSSDYACDCSVVTEQFRVHTGGMVARVFPEAVPDISTVASALADSSRAAMCAALMDGRAWTVGELGRYAGLARSTASEHVDVLVTHGLVHDIRQGRHRYIRLAGEDIARVVESLGVVARSPLPTPHSLSASRANANLREGRTCYQHLAGKLGGRLAEQLEEHEFIDSHCQVTNQGHRLFIQWGVPPKMLDTGRSCMDSTERRFHLAGPLGTGICKTLLDKEWLSRRGRTRAVRLTPAGRAALNDAGISLNGPEPRKVDTGI
SIO_010081: CAURI_RS00020
subclass of: SO_0000673
so part of: CAURI_RS00020
location: complement(2907..3701)
location: region:2907-3701:-1
so has part: feature:2907-3701:-1:exon

WP_174878612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2907-3701:-1:exon

CAURI_RS14030
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS14030
pseudo: true
so part of: sequence
location: 3731..>3949
location: region:3731-3949:1
so has part: feature:3731-3949:1:exon
subclass of: SO_0000010

71201337
type: Gene
SIO_000068: ncbigene

position:3731:1
position: 3731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3949:1
position: 3949
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3731-3949:1:exon

CAURI_RS14030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS14030
inference: COORDINATES: protein motif:HMM:NF012760.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: CAURI_RS14030
subclass of: SO_0000673
so part of: CAURI_RS14030
location: 3731..>3949
location: region:3731-3949:1
so has part: feature:3731-3949:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3731-3949:1:exon

CAURI_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00030
so part of: sequence
location: 4211..5575
location: region:4211-5575:1
so has part: feature:4211-5575:1:exon
subclass of: SO_0000010

31922608
type: Gene
SIO_000068: ncbigene

position:4211:1
position: 4211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5575:1
position: 5575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4211-5575:1:exon

CAURI_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005326060.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MTAHRRTALVATLLGFFIVMLDTTIVNVALAEIGTDLDTTVGSLQWVVDAYTLVFAAFLLTAGAACDRLGARRVYLAGLVVFAVLSAVCALAPTGGFLVAGRAVQGVGAAAIVPGSLALLSAVYDDPKERARAIGLWGGAGGVAAAIGPVLGGALVSTIGWRAVFWVNLPIVAIGCLLTLWAIPALTGSRARRVDLPGQVLSVLTLVAVTYAVITAGEHGWSPWQVGALIAGGVFLALFIIAERRHPDPMLPMALFTRARFSVAAMVGLALNISFFGQLFVLSLFFQQYLGYEPWQAGLALAPQACSAVVASPLGGRAVARWGAFPTMLTGLVVGTIGFSSLVLLTAETPYVVVAVLTFTAGFGMAFAMPAATSAAVASAPPEHVGIAGGVINAARQTGSVVGVAVLGGMVASGAFLTGFHTAVAVAGGVFGAAALVVAATIISHLQEPVTPEV
SIO_010081: CAURI_RS00030
subclass of: SO_0000673
so part of: CAURI_RS00030
location: 4211..5575
location: region:4211-5575:1
so has part: feature:4211-5575:1:exon

WP_010187840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4211-5575:1:exon

CAURI_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00035
pseudo: true
so part of: sequence
location: complement(5747..6459)
location: region:5747-6459:-1
so has part: feature:5747-6459:-1:exon
subclass of: SO_0000010

31922609
type: Gene
SIO_000068: ncbigene

position:5747:-1
position: 5747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6459:-1
position: 6459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5747-6459:-1:exon

CAURI_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005323728.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: CAURI_RS00035
subclass of: SO_0000673
so part of: CAURI_RS00035
location: complement(5747..6459)
location: region:5747-6459:-1
so has part: feature:5747-6459:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5747-6459:-1:exon

CAURI_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00045
old locus tag: cauri_pET4482710
so part of: sequence
location: complement(7596..7835)
location: region:7596-7835:-1
so has part: feature:7596-7835:-1:exon
subclass of: SO_0000010

31922610
type: Gene
SIO_000068: ncbigene

position:7596:-1
position: 7596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7835:-1
position: 7835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7596-7835:-1:exon

CAURI_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00045
old locus tag: cauri_pET4482710
inference: COORDINATES: protein motif:HMM:NF024461.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3923 family protein
translation: MKLSWALWWTVTLIEVLSFIALSAFLLVRSEDAAGAQQTIELRLLNVAIPIFTYLIPFVLQVVWFILNKRAEKKVTHRP
SIO_010081: CAURI_RS00045
subclass of: SO_0000673
so part of: CAURI_RS00045
location: complement(7596..7835)
location: region:7596-7835:-1
so has part: feature:7596-7835:-1:exon

WP_010187835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7596-7835:-1:exon

CAURI_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00050
old locus tag: cauri_pET4482711
so part of: sequence
location: complement(8077..8706)
location: region:8077-8706:-1
so has part: feature:8077-8706:-1:exon
subclass of: SO_0000010

31922611
type: Gene
SIO_000068: ncbigene

position:8077:-1
position: 8077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8706:-1
position: 8706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8077-8706:-1:exon

CAURI_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00050
old locus tag: cauri_pET4482711
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187834.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MGKSSGSHGQRVGYIRVSTVEQNNQRQKELLNTSGSIDRFFEDKISGRTKTERPGLRECMAYVRDGDELVVSSIDRLARSLTDLRGIVDELTDKGVTVTFLHENLSFSKDTSDPRADLMLSILGSFAEFERAIIRERQAEGIALAKKAGKYKGRKPALNPQQVAEIKQRVLAGESKASLAREFGVTRPTVYRALKKRLKQREIRVNNVA
SIO_010081: CAURI_RS00050
subclass of: SO_0000673
so part of: CAURI_RS00050
location: complement(8077..8706)
location: region:8077-8706:-1
so has part: feature:8077-8706:-1:exon

WP_010187834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8077-8706:-1:exon

CAURI_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00055
old locus tag: cauri_pET4482712
so part of: sequence
location: complement(8706..8969)
location: region:8706-8969:-1
so has part: feature:8706-8969:-1:exon
subclass of: SO_0000010

31922612
type: Gene
SIO_000068: ncbigene

position:8969:-1
position: 8969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8706-8969:-1:exon

CAURI_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00055
old locus tag: cauri_pET4482712
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005326214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVVLSSDGFHIESHIDSVPALARVKDLHGGLSSGQQALGRIVQALLANADGLDGIQLYALSDAIESYRDAVIAQENAAFKPSRGED
SIO_010081: CAURI_RS00055
subclass of: SO_0000673
so part of: CAURI_RS00055
location: complement(8706..8969)
location: region:8706-8969:-1
so has part: feature:8706-8969:-1:exon

WP_174878611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8706-8969:-1:exon

CAURI_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00060
so part of: sequence
location: 9187..9261
location: region:9187-9261:1
so has part: feature:9187-9261:1:exon
subclass of: SO_0000663

31922613
type: Gene
SIO_000068: ncbigene

position:9187:1
position: 9187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9261:1
position: 9261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9187-9261:1:exon

CAURI_RS00060
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 548476
locus tag: CAURI_RS00060
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:9221..9223,aa:Val,seq:aac)
SIO_010081: CAURI_RS00060
subclass of: SO_0000673
so part of: CAURI_RS00060
location: 9187..9261
location: region:9187-9261:1
so has part: feature:9187-9261:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9187-9261:1:exon

CAURI_RS13415
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS13415
so part of: sequence
location: complement(9341..10057)
location: region:9341-10057:-1
so has part: feature:9341-10057:-1:exon
subclass of: SO_0000010

31925211
type: Gene
SIO_000068: ncbigene

position:9341:-1
position: 9341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10057:-1
position: 10057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9341-10057:-1:exon

CAURI_RS13415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS13415
inference: COORDINATES: protein motif:HMM:NF012792.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MITNITSAPARRKVQRIFQEHIPDASKLLLDKKKYEDSRSVLLQCAIDEKIVGGLLALHPSTQLDEGLRSVGMTVKDDFPESLATRSIVEVAVLSEYQNMDIGQKLVEQAEKAFVEAGATISLLYVDSRSPESTHRFWKKMGYTPGDPNKKGEYCTGLPPEASTMAKLRSGRAGTAYYRYLESPRKLQVAKTPSTQSQPEATTVEVAETPRSWLRQRPLSISLLTAIIVVVSVLFWIL
SIO_010081: CAURI_RS13415
subclass of: SO_0000673
so part of: CAURI_RS13415
location: complement(9341..10057)
location: region:9341-10057:-1
so has part: feature:9341-10057:-1:exon

WP_157753243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9341-10057:-1:exon

CAURI_RS13425
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS13425
so part of: sequence
location: complement(10847..11650)
location: region:10847-11650:-1
so has part: feature:10847-11650:-1:exon
subclass of: SO_0000010

31925213
type: Gene
SIO_000068: ncbigene

position:10847:-1
position: 10847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11650:-1
position: 11650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10847-11650:-1:exon

CAURI_RS13425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS13425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187825.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKLSPICRNCGVENRGAPDPEPGSCEICNDDRQYLDPNGQKWIYREALTDFTIQATELEPDAYALKTEPVIGIGHTSYLLNVGDGWLLWDPLPITFRNQTPTPRIQQGLHNVSIAASHPHMFGAQSHWAVEYNGTVLVNELDLKWSNEAISRKVVWRKEVDLSPRAKLVELGGHFPGSSILVWKNSSGGTWLFSSDTAQVRPNGHFAFMWSYPNLLPLGRTEVDRMVDRFPPTNASKAFDNFGRSVTGDIDNIFRLSAQNHNSHLV
SIO_010081: CAURI_RS13425
subclass of: SO_0000673
so part of: CAURI_RS13425
location: complement(10847..11650)
location: region:10847-11650:-1
so has part: feature:10847-11650:-1:exon

WP_010187825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10847-11650:-1:exon

CAURI_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00070
old locus tag: cauri_pET4482715
so part of: sequence
location: complement(11650..12291)
location: region:11650-12291:-1
so has part: feature:11650-12291:-1:exon
subclass of: SO_0000010

31922615
type: Gene
SIO_000068: ncbigene

position:12291:-1
position: 12291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11650-12291:-1:exon

CAURI_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00070
old locus tag: cauri_pET4482715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187823.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)H-binding protein
translation: MHILILGANGQVGAVLSRLAISRGHSVSGVTRSSTPDFLSGPGTQLIHGDAYDKNFLTSVASGVDVVVNATRPSPGREAELVQGSINVAEVCHDLGVRLVVSGGAGSLPVSDDEGAPRTINTEFVQDAWRDIAVASTNQFDTLMESLPDSDWTYVAPPANLIDGPELGNYRLSFSSLVQNQDGVSELSWRDFADLLLNEIESPSGHRIVTGGY
SIO_010081: CAURI_RS00070
subclass of: SO_0000673
so part of: CAURI_RS00070
location: complement(11650..12291)
location: region:11650-12291:-1
so has part: feature:11650-12291:-1:exon

WP_236660801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11650-12291:-1:exon

CAURI_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00075
old locus tag: cauri_pET4482716
so part of: sequence
location: complement(12307..13215)
location: region:12307-13215:-1
so has part: feature:12307-13215:-1:exon
subclass of: SO_0000010

31922616
type: Gene
SIO_000068: ncbigene

position:12307:-1
position: 12307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13215:-1
position: 13215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12307-13215:-1:exon

CAURI_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00075
old locus tag: cauri_pET4482716
inference: COORDINATES: protein motif:HMM:NF013088.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EamA family transporter
translation: MTSTQFTSRDNFLWTLVTASAPIVWGTTYVVTSQLLPAGFPFWSSVLRALPGGILGLLICRFLPKGVWIIRSVILSVLNIGIWFPLLFLAAYRLPGGIASVLAACQPLFVITFAWLLTAQSPTFWRIGWAVCGVFGIAIMVLAPGASLDWVGIAAGIVGTASMALGIVLTKRWGRPTDAFTWTSWLLSWSGLMLIPIAFLLEGNPPALTSTSLMGYLWLSLVGGLLTYWAWFSGLAKVSAVSAGFLPLLSPLVATLLGLVILGESLSTIQWLGFLLCLCTILLSQLQPSQFLSFLKFKDSSS
SIO_010081: CAURI_RS00075
subclass of: SO_0000673
so part of: CAURI_RS00075
location: complement(12307..13215)
location: region:12307-13215:-1
so has part: feature:12307-13215:-1:exon

WP_010187821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12307-13215:-1:exon

CAURI_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00080
old locus tag: cauri_pET4482717
so part of: sequence
location: complement(13224..14165)
location: region:13224-14165:-1
so has part: feature:13224-14165:-1:exon
subclass of: SO_0000010

31922617
type: Gene
SIO_000068: ncbigene

position:13224:-1
position: 13224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14165:-1
position: 14165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13224-14165:-1:exon

CAURI_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00080
old locus tag: cauri_pET4482717
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012468093.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pseudouridine-5'-phosphate glycosidase
translation: MHNVPIEYSDEVQNALSNGLPILGLESNVLSHGLPYPRNLEMFNACDEIIRSNGVVPALTFIRDKRICIGASPKDVELLTDDPKPIKVSARDIALCIAQGKVGATTASASIAICELAGIRIFSTAGLGGVHRDFSETLDVSADLHEISSRKTIVVSAGVKKFLDIPKTSEVLESLGVPVVGFGTSEFPAFYCRKSGAFLESFSQDPIEIATAAATHIETVGPGGFLILVAPSKEIALDDELVEKAVQRSLINASSQGVRGKAITKFVMRAIDSETDNRSQTANFDVMVEVVNAAAQIARSLKPEFFLDSVAKK
SIO_010081: CAURI_RS00080
subclass of: SO_0000673
so part of: CAURI_RS00080
location: complement(13224..14165)
location: region:13224-14165:-1
so has part: feature:13224-14165:-1:exon

WP_012468093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13224-14165:-1:exon

CAURI_RS13700
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS13700
so part of: sequence
location: complement(14158..14388)
location: region:14158-14388:-1
so has part: feature:14158-14388:-1:exon
subclass of: SO_0000010

43446367
type: Gene
SIO_000068: ncbigene

position:14158:-1
position: 14158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14388:-1
position: 14388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14158-14388:-1:exon

CAURI_RS13700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS13700
inference: COORDINATES: protein motif:HMM:NF013522.2
GO function: GO:0016853 - isomerase activity [Evidence IEA]
GO process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tautomerase family protein
translation: MPHIEIYHFPNSMSDSDRSALADEVTEVIAAHFPTKPGKVSIRLNSIDERDWEEAVVEKMLIPQRATLIREPDYLA
SIO_010081: CAURI_RS13700
subclass of: SO_0000673
so part of: CAURI_RS13700
location: complement(14158..14388)
location: region:14158-14388:-1
so has part: feature:14158-14388:-1:exon

WP_157753241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14158-14388:-1:exon

CAURI_RS13430
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS13430
so part of: sequence
location: complement(14398..18192)
location: region:14398-18192:-1
so has part: feature:14398-18192:-1:exon
subclass of: SO_0000010

31925214
type: Gene
SIO_000068: ncbigene

position:14398:-1
position: 14398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18192:-1
position: 18192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14398-18192:-1:exon

CAURI_RS13430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS13430
inference: COORDINATES: protein motif:HMM:NF012711.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AMP-binding protein
translation: MRTQPIHKQDLGPTSIEEIQAVLTGKSNFAIVCQPGLHVSLLAIYALSQGKSYIPIDSNYPEQRICQILEDSKCELVFTDVSPDKCAPWRLDREIIQLSEAFFNLASSLASEGFSSFSATDLLTDPKGLAYTIFTSGSTGRPKGISISRSNIHNQLCWLSAEVHLSCTTRILQKTPIGFDAAQWEILAPLAGSMAVQGSIGSYRDPCKIVEDVKKGSINSLQAVPALIQAIVDINGFREMSTLSKLFSGGETLSWKLVHEIREQNPSIEIVNLYGPSECTINASAFCINTSIDASSREIGSVPIGTPVANTSFYLDTGSGEGFIRPRPHAQGELIICGEQVGLGYLNNEAETDKRFFEIAGSPAYKTGDLIRCDSNGQLIFVGRTDNQIKLRGNRIELDEISHHYQAHPWVTRAECVVVSDENVTSSQSLVAFMQLSPNAAPLMDGSEAETHHLSKESHLQVQAQLSNLGVRRDLVGPSLDFSQKMAGRLTNAIEEYSFQRKTYRSFGCGDVSTDDIDKLAQLFANHGPTPHPLFQELVPDIEKDPIAAILCGLSAFFSDSRLLPKYSYASPGSLYSIQTFISFGPESELAGSLFYFDPVQGTLLKVPGNNPCDRTQLHFISHTEAISKVYKKNVREVQYFELGHLLGFIRDLLEGTSLIPRFSEGTRPESIVPVSPTDIYLGSVTLEFDSSSQSQTHTYLEEPNWFITVPTESELAEPGVYKYVDGQLEAYKTSTSILQSDVIAINQEVFSSSSFGIGLYFIREELEAQRHYVSLGAALHRLQARCPSLGFMSSGYSSFSGNPLPSALKAAQILNVDESLNELAFYYALAGPISAEQRSHRGMNEDQVHMEGPTEIITRQIKEKVPSYMMPDRVVVMNQLPRTANGKIDRKALVSIASDKFKTKVRNGRLPETENEIAVAKAWSQILKCTDIRANDNFFDLGGNSIRVMMLISQLRENLGIKASPQLLFANPTLEKFADSISGSRETSRAIDLIQPATNITNQTCTVMWPGLGGLPLNLRKLAGSVNLNGRVLGIQAQGLNEGEEILKDLDEVARKDIQLLPKNAELNLIGYSFGARVAIKAATQLAQMGRQVRSLTLLCPGNPTLAPDNSIEQTGSRDSSVDNPEFLGMLLSVFNSPLRADDFRSARRSCQTIEDAIKFIHAKNKDISYGQVSRIVRLVATQYQFEYTFDEIEHYQPVCPTLVVKAKGDKYSSIDALLSANGEFMKSIEVEVDHYEILKPPFVTTLGNTIRDFQHYSSTVNK
SIO_010081: CAURI_RS13430
subclass of: SO_0000673
so part of: CAURI_RS13430
location: complement(14398..18192)
location: region:14398-18192:-1
so has part: feature:14398-18192:-1:exon

WP_100067412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14398-18192:-1:exon

CAURI_RS00090
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
gene: upp
locus tag: CAURI_RS00090
old locus tag: cauri_pET4482719
so part of: sequence
location: complement(18246..18887)
location: region:18246-18887:-1
so has part: feature:18246-18887:-1:exon
subclass of: SO_0000010

31922618
type: Gene
SIO_000068: ncbigene

position:18246:-1
position: 18246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18887:-1
position: 18887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18246-18887:-1:exon

CAURI_RS00090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
gene: upp
locus tag: CAURI_RS00090
old locus tag: cauri_pET4482719
EC number: 2.4.2.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016189760.1
GO function: GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO process: GO:0009116 - nucleoside metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: uracil phosphoribosyltransferase
translation: MPVHLLPNSKFASSLQTVARNRDSNIKDFTWATSRVNRMLVEYALNFAEYAERTVETPTGASFDGVEIKTEICGVSVIRAGESIEQAFREVLPGAPIGKILLQRDPKSLNPTFFYEKYPDCIESSTVLLFEPMVATGRSLSLAMDRLMLAGVSESSIISVNYLASPDGIKYAEENHPQATFVVASIEQKLDANGFMLPGIGDFGDRFFSKTYP
SIO_010081: CAURI_RS00090
subclass of: SO_0000673
so part of: CAURI_RS00090
location: complement(18246..18887)
location: region:18246-18887:-1
so has part: feature:18246-18887:-1:exon

WP_012468095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18246-18887:-1:exon

CAURI_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00095
old locus tag: cauri_pET4482720
so part of: sequence
location: complement(18896..19576)
location: region:18896-19576:-1
so has part: feature:18896-19576:-1:exon
subclass of: SO_0000010

31922619
type: Gene
SIO_000068: ncbigene

position:18896:-1
position: 18896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19576:-1
position: 19576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18896-19576:-1:exon

CAURI_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00095
old locus tag: cauri_pET4482720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187804.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoribosylanthranilate isomerase
translation: MDPVIQVAGIHDIEEAKLAIESGANWLGIPLRLPSGKDDISEEDTKHLIEQLGSQAKFVLITYSSSAEELTSLVKELNFDAVQLHGDISVEEVQALRDMNPSIQILKSLVVKQDNHSQLLSTVREMEDVVDMFLTDTYNPDTGAKGATGLQHDLTVSKKIVESTRKPVIIAGGLNPTNVAEAIAFVRPAGVDAHTGLEGKDGRKDRHLVEKFSEESRRQFKELDEE
SIO_010081: CAURI_RS00095
subclass of: SO_0000673
so part of: CAURI_RS00095
location: complement(18896..19576)
location: region:18896-19576:-1
so has part: feature:18896-19576:-1:exon

WP_010187804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18896-19576:-1:exon

CAURI_RS13435
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS13435
so part of: sequence
location: 19736..20254
location: region:19736-20254:1
so has part: feature:19736-20254:1:exon
subclass of: SO_0000010

31925215
type: Gene
SIO_000068: ncbigene

position:19736:1
position: 19736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20254:1
position: 20254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19736-20254:1:exon

CAURI_RS13435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS13435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187802.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MLRDQRPSALIEQWIETRPDTDIRGMLVTSRIIHLRQALEDVLSDCHESVGLRGWEFDVLATLRRQRPGVRLTHKELSDLAMVSKSAISQRIDRLVDRGLVRRVENPDQRREVFVELTEQGYLLVERVIDEHASLCSEFISPLNDDEYEQLNGLLDKLLIRSEQAPGYPSNL
SIO_010081: CAURI_RS13435
subclass of: SO_0000673
so part of: CAURI_RS13435
location: 19736..20254
location: region:19736-20254:1
so has part: feature:19736-20254:1:exon

WP_010187802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19736-20254:1:exon

CAURI_RS00105
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00105
pseudo: true
so part of: sequence
location: <20883..21125
location: region:20883-21125:1
so has part: feature:20883-21125:1:exon
subclass of: SO_0000010

31922620
type: Gene
SIO_000068: ncbigene

position:20883:1
position: 20883
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:21125:1
position: 21125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20883-21125:1:exon

CAURI_RS00105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006680457.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS256 family transposase
SIO_010081: CAURI_RS00105
subclass of: SO_0000673
so part of: CAURI_RS00105
location: <20883..21125
location: region:20883-21125:1
so has part: feature:20883-21125:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20883-21125:1:exon

CAURI_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00110
old locus tag: cauri_pET4482724
so part of: sequence
location: 21721..22317
location: region:21721-22317:1
so has part: feature:21721-22317:1:exon
subclass of: SO_0000010

31922621
type: Gene
SIO_000068: ncbigene

position:21721:1
position: 21721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22317:1
position: 22317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21721-22317:1:exon

CAURI_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00110
old locus tag: cauri_pET4482724
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015453125.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MTRVISVIQSKGGTGKTTLSVMLAEAIREMGYTVAVADGDPQQSATRWASKVKDFPFPIESVRSSSDFSGVVRRGNNPNFLIVDTPPGGLAFITESAEAADLVLLPTGVSPMDIDRTQVTLSWLIEMGIPTAVVLSNVDRREKLLDEVHAELEGDETAALADTVIPTRAATRRVFGTKPSSTKVWDSLAREVVAAFED
SIO_010081: CAURI_RS00110
subclass of: SO_0000673
so part of: CAURI_RS00110
location: 21721..22317
location: region:21721-22317:1
so has part: feature:21721-22317:1:exon

WP_012468097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21721-22317:1:exon

CAURI_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00115
old locus tag: cauri_pET4482725
so part of: sequence
location: 22328..22564
location: region:22328-22564:1
so has part: feature:22328-22564:1:exon
subclass of: SO_0000010

31922622
type: Gene
SIO_000068: ncbigene

position:22328:1
position: 22328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22564:1
position: 22564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22328-22564:1:exon

CAURI_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00115
old locus tag: cauri_pET4482725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187791.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIPKAKNKAREESLGNRSESSPSTKMFAQANDKATRLQLYVRDRQLIKELKLAAVEEEKSISQLFEEWATRWLEERS
SIO_010081: CAURI_RS00115
subclass of: SO_0000673
so part of: CAURI_RS00115
location: 22328..22564
location: region:22328-22564:1
so has part: feature:22328-22564:1:exon

WP_010187791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22328-22564:1:exon

CAURI_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
gene: mobF
locus tag: CAURI_RS00120
old locus tag: cauri_pET4482726
so part of: sequence
location: complement(22648..27129)
location: region:22648-27129:-1
so has part: feature:22648-27129:-1:exon
subclass of: SO_0000010

31922623
type: Gene
SIO_000068: ncbigene

position:22648:-1
position: 22648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27129:-1
position: 27129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22648-27129:-1:exon

CAURI_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
gene: mobF
locus tag: CAURI_RS00120
old locus tag: cauri_pET4482726
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005326132.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MMTLRVVNSGTGYEYLLRSVATNDGPTDAPSLSKYYDAKGTPPGRWLGSGLAGLNTENVVQGGEVTESQMAALYGEGLHPDADMKMSEGQKIKDVQLGRPFANFTNDVPVLVALRDAERRYRQTTGTLMGKQERAELVQNIGREFFIEEHGVEPQSGREIVNWVNGLKDNVRQSVSGFDLTFSPAKSVSVVWALSDEETARRIEKLHHQAVKEAMAWAEDNVFFTRSGKQGREQVKTKGVIASEFKHYDTRAGDPDLHSHVLVSNKVQAEDGRWLSLDSKALHKQAQAISHRYDSILNTLLSNDMGYSFTARDHGVNKEPTWEIEGVSESLMESFSKRRRGAEPVYKRLVDEFVAARGTTPNSVEVGRLWQQAILETRDAKREPESLSELRAGWKNEVSARDNGQEELASIAQLSANSGHDERPLFDAHEHLSGLIDDVLATVTRRRSYFRTSHVATAAGGKLQGYRFASLAERDLIHATVVEAIVRDKAIALNDFDVLELPESLKNTAGQARDTRADSELFTTQDILDTEDKALAALNEPVAAFAPSRAIDEALDGHEREAGFRLNAGQESMARYLLTCGTLAATGVGPAGTGKTASMRLVANVWANEGRNVIGLAPSAQAADVLSEDLGFDAFTIDKLTYTWRGNHPTKPGHSLKDLPVSINAGDMIIVDEAGMASTPNIGSLLEIAEEAGAVVRFIGDHKQLGAVENGGLFGAMVNAAERTDNQLSEVVRFGGDREQSATSLRLREGDRSTFDFYSERGWVNGGARSDMLDKAAADYLADISSGKTSLLIAATNRDVAELNETIRAHYIAHSVVDTTVEAQLSRGEKAGLGDTILARKNQTFYDDETATSTRINNGTLMTVTGIAENGSITARNQTTGDELCLPADYVHDNVQLGYAATVHRAQGSTVDCTRAVIDHHVDRAGLYVALTRGKIANHIYAVTEHQLDELAEDGHYHYQGIDHAPSARDVFDKAISRDTTPKAAREVIAEVVDEQTSPDRMMGLWLMGKDEATNDFIDAYLPDWIDTLPGDLSRKIETSDDGTEPIRHGWVKLIDAGIDPRTVMDAATRDIDNAHDPARLIRYRLDEQLRLRDTGKRNQLPPVSGQTDIELDTWLRTHNPYDRAETTRLTGKEHNLNRLNQSVLVEHARFASSKVESLTWQEASITTRLHEDKDAAANEVQADYQQVVLDAGRIRAYEQAMADHSAALREEETARADIEHQRLLAEDYTRPVAERAYDHDVDGYGTYQQRINHAHKRLEQAQQRRKLAQQAIEDTGANLPEAGLWEEICYRADDTEEWDKRLNAAVQHDSEHVHKLQQRLDSIRREKMDFADRADIATRLRAEEIPNDVADHAGYIADEVNLLAAQRTYELRRLGVDEPAQEAIRDMVAETIAAAYEPDNDETHHDEQDAAAQNTVEEEQPAPETTTENENADNTQDEDTSRLNEGARASMDFIASLGLDDAPHITTTHSNNHDNEEQTPTDDLEEEQSPEL
SIO_010081: CAURI_RS00120
subclass of: SO_0000673
so part of: CAURI_RS00120
location: complement(22648..27129)
location: region:22648-27129:-1
so has part: feature:22648-27129:-1:exon

WP_029158875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22648-27129:-1:exon

CAURI_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00125
so part of: sequence
location: 27359..27733
location: region:27359-27733:1
so has part: feature:27359-27733:1:exon
subclass of: SO_0000010

31922624
type: Gene
SIO_000068: ncbigene

position:27359:1
position: 27359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27733:1
position: 27733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27359-27733:1:exon

CAURI_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005326133.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
translation: MKKRQELRQHLEEGQRKLRDRKKSINSLLSLIDQRDELNEKIGEVSQSIIDLGEAKEFVRELVDMSQRDFNAMLKTAQESSPSVNDSPREDESHTGDSECQDVDEAASAAEGAGGDGDHEKGGQ
SIO_010081: CAURI_RS00125
subclass of: SO_0000673
so part of: CAURI_RS00125
location: 27359..27733
location: region:27359-27733:1
so has part: feature:27359-27733:1:exon

WP_236660799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27359-27733:1:exon

CAURI_RS00135
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS00135
pseudo: true
so part of: sequence
location: 28324..>28464
location: region:28324-28464:1
so has part: feature:28324-28464:1:exon
subclass of: SO_0000010

31922626
type: Gene
SIO_000068: ncbigene

position:28324:1
position: 28324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28464:1
position: 28464
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28324-28464:1:exon

CAURI_RS00135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS00135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558200.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: CAURI_RS00135
subclass of: SO_0000673
so part of: CAURI_RS00135
location: 28324..>28464
location: region:28324-28464:1
so has part: feature:28324-28464:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28324-28464:1:exon

CAURI_RS13905
type: Gene
subclass of: SO_0000704
RO_0002162: 548476
locus tag: CAURI_RS13905
so part of: sequence
location: 28512..28661
location: region:28512-28661:1
so has part: feature:28512-28661:1:exon
subclass of: SO_0000010

43965159
type: Gene
SIO_000068: ncbigene

position:28512:1
position: 28512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28661:1
position: 28661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28512-28661:1:exon

CAURI_RS13905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 548476
locus tag: CAURI_RS13905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018296872.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAITAMLPKLEESHWNQVAADFEEKTINNLFNQIMLNGLKDEPEEQEQE
SIO_010081: CAURI_RS13905
subclass of: SO_0000673
so part of: CAURI_RS13905
location: 28512..28661
location: region:28512-28661:1
so has part: feature:28512-28661:1:exon

WP_010187846.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28512-28661:1:exon