Natrialba magadii ATCC 43099 plasmid pNMAG03, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.
A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
Complete sequence of plasmid3 of Natrialba magadii ATCC 43099
Submitted (15-SEP-2016) Computational Biology Group, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, Martinsreid D-82152, Germany
Submitted (12-FEB-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001935.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4083620\nSource DNA and organism available from Julie A. Maupin-Furlow\n(jmaupin@ufl.edu)\nContacts: Julie A. Maupin-Furlow (jmaupin@ufl.edu)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Natrialba magadii ATCC 43099\nCulture Collection ID :: ATCC 43099, DSM 3394, NCIMB 2190\nGOLD Stamp ID :: Gi02060\nIsolation Site :: Lake Magadi in Kenya\nSource of Isolate :: ATCC 43099\nLatitude :: \"-189,635\"\nLongitude :: \"36,273,931\"\nOxygen Requirement :: Aerobe\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nSalinity :: Halophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Fresh water\nPhenotypes :: Alkaliphile\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 18:51:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,252\nCDSs (total) :: 4,189\nGenes (coding) :: 4,111\nCDSs (with protein) :: 4,111\nGenes (RNA) :: 63\nrRNAs :: 5, 3, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 3, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 33 of 78\nPseudo Genes (incomplete) :: 56 of 78\nPseudo Genes (internal stop) :: 28 of 78\nPseudo Genes (multiple problems) :: 29 of 78\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004217564.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004217566.1
COORDINATES: similar to AA sequence:RefSeq:WP_012996995.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268176.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268177.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268178.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268179.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268180.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268181.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268183.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268184.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268185.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268186.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268187.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268188.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268189.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268190.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268191.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268203.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268204.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268205.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268206.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268209.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268211.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268213.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268216.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268217.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268223.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268224.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268225.1
COORDINATES: similar to AA sequence:RefSeq:WP_012997000.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268227.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268228.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004268230.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268235.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268238.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268240.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268242.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268243.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268246.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268247.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268248.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268250.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268251.1
XkdF-like putative serine protease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004268254.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268255.1
COORDINATES: similar to AA sequence:RefSeq:WP_015968031.1
COORDINATES: similar to AA sequence:RefSeq:WP_012997003.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268259.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268260.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268261.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268262.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268265.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268266.1
COORDINATES: protein motif:HMM:NF013964.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004268268.1
COORDINATES: protein motif:HMM:NF021648.2
COORDINATES: similar to AA sequence:RefSeq:WP_004268270.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268271.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268272.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268274.1
Gp138 family membrane-puncturing spike protein
COORDINATES: similar to AA sequence:RefSeq:WP_004268276.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268277.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268278.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268280.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268282.1
COORDINATES: similar to AA sequence:RefSeq:WP_015968038.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268286.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268285.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268284.1
COORDINATES: similar to AA sequence:RefSeq:WP_012997007.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217542.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217543.1
COORDINATES: similar to AA sequence:RefSeq:WP_012997008.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217545.1
COORDINATES: similar to AA sequence:RefSeq:WP_012997009.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217547.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217549.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004217550.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217552.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217554.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217555.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217557.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217559.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004217560.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217561.1