Deinococcus deserti VCD115 plasmid 3, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti
Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons
Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti
Submitted (18-APR-2014) DSV, EBEB, SBVME, LEMIRE, CEA, CEA Cadarache, Saint Paul Lez Durnance 13108, France
Submitted (20-DEC-2010) DSV, EBEB, SBVME, LEMIRE, CEA, CEA Cadarache, Saint Paul Lez Durnance 13108, France
Submitted (09-JUL-2008) DSV, EBEB, SBVME, LEMIRE, CEA, CEA Cadarache, Saint Paul Lez Durnance 13108, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP001117.1.\nGenome sequencing was performed by Genoscope, www.genoscope.cns.fr.\nSource DNA is available from de Groot at nicolaas.degroot@cea.fr.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/07/2023 22:03:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,566\nCDSs (total) :: 3,504\nGenes (coding) :: 3,467\nCDSs (with protein) :: 3,467\nGenes (RNA) :: 62\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 11 of 37\nPseudo Genes (incomplete) :: 23 of 37\nPseudo Genes (internal stop) :: 14 of 37\nPseudo Genes (multiple problems) :: 10 of 37\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Deinococcus deserti VCD115
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:NF018290.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588710.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019585365.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526061.1
COORDINATES: similar to AA sequence:RefSeq:WP_017462102.1
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF019349.2
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024808.2
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012029570.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012904.2
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015235698.1
COORDINATES: similar to AA sequence:RefSeq:WP_020710170.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159417.1
COORDINATES: protein motif:HMM:NF012707.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019585081.1
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555246.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555247.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555248.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889234.1
COORDINATES: similar to AA sequence:RefSeq:WP_011531257.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015233972.1
COORDINATES: similar to AA sequence:RefSeq:WP_009631641.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011884.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586889.1
COORDINATES: similar to AA sequence:RefSeq:WP_011519093.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555311.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_019008133.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887756.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887755.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235528.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010322.1
COORDINATES: similar to AA sequence:RefSeq:WP_006620272.1
COORDINATES: similar to AA sequence:RefSeq:WP_014983273.1
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: similar to AA sequence:RefSeq:WP_015231546.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013555538.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555539.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555540.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612364.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019585823.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695010.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694649.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019588517.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233983.1
GO:0004559 - alpha-mannosidase activity [Evidence IEA]
GO:0006013 - mannose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684061.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684060.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_018465698.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530712.1
GO:0015379 - potassium:chloride symporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF037832.2
COORDINATES: similar to AA sequence:RefSeq:WP_015236592.1
bifunctional UDP-sugar hydrolase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_019010069.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015231477.1
FAD-dependent tricarballylate dehydrogenase TcuA
COORDINATES: similar to AA sequence:RefSeq:WP_015231478.1
COORDINATES: protein motif:HMM:NF028235.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612279.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019008357.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015231388.1
COORDINATES: protein motif:HMM:NF016167.2
COORDINATES: similar to AA sequence:RefSeq:WP_007282782.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586610.1
COORDINATES: protein motif:HMM:NF025918.2
COORDINATES: similar to AA sequence:RefSeq:WP_012694859.1
IS701-like element ISDds6 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_019011738.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015231577.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586672.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684183.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231574.1
COORDINATES: similar to AA sequence:RefSeq:WP_017492074.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015231572.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014432715.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231570.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015231567.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586663.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586662.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019586703.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115997.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586664.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019588771.1
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015231564.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386086.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017869612.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159621.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159622.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159624.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019588524.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588523.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588522.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231270.1
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01250.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612217.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009785160.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694783.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011529781.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585066.1
COORDINATES: similar to AA sequence:RefSeq:WP_019584696.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012680606.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530226.1
COORDINATES: similar to AA sequence:RefSeq:WP_019141834.1
COORDINATES: protein motif:HMM:NF025607.2
COORDINATES: similar to AA sequence:RefSeq:WP_015231658.1
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF038114.1
COORDINATES: similar to AA sequence:RefSeq:WP_011087510.1
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019588789.1
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_015721505.1
COORDINATES: similar to AA sequence:RefSeq:WP_019012405.1
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
phenylalanine--tRNA ligase beta subunit-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_019012404.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019012402.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887486.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014684028.1
COORDINATES: similar to AA sequence:RefSeq:WP_013704589.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_012889198.1
N-acetylmannosamine-6-phosphate 2-epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_002972014.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991753.1
COORDINATES: similar to AA sequence:RefSeq:WP_018117163.1
COORDINATES: similar to AA sequence:RefSeq:WP_018465368.1
COORDINATES: similar to AA sequence:RefSeq:WP_018465367.1
COORDINATES: protein motif:HMM:NF010730.0
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_018467903.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017992186.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018426723.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013556402.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017872025.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555461.1
COORDINATES: similar to AA sequence:RefSeq:WP_007510220.1
COORDINATES: similar to AA sequence:RefSeq:WP_019911031.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555289.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009803.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529726.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587093.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530265.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530264.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017262.2
COORDINATES: similar to AA sequence:RefSeq:WP_013555288.1
COORDINATES: similar to AA sequence:RefSeq:WP_014682840.1
COORDINATES: similar to AA sequence:RefSeq:WP_019616762.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018386975.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_015014325.1
COORDINATES: similar to AA sequence:RefSeq:WP_018465130.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556576.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011525595.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033296 - rhamnose binding [Evidence IEA]; GO:0015153 - rhamnose transmembrane transporter activity [Evidence IEA]
GO:0015762 - rhamnose transmembrane transport [Evidence IEA]
rhamnose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018434379.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525597.1
COORDINATES: similar to AA sequence:RefSeq:WP_018381527.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525599.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525600.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011525601.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
GO:0019299 - rhamnose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525602.1
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012887200.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888542.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525605.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0019516 - lactate oxidation [Evidence IEA]
LutB/LldF family L-lactate oxidation iron-sulfur protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525606.1
COORDINATES: protein motif:HMM:NF014443.2
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF017652.2
GO:0016740 - transferase activity [Evidence IEA]
GO:0019475 - L-lysine catabolic process to acetate [Evidence IEA]
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_013012616.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235219.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235214.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235213.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235212.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236081.1
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: similar to AA sequence:RefSeq:WP_012695319.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234491.1
GO:0004801 - transaldolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002628420.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236331.1
COORDINATES: similar to AA sequence:RefSeq:WP_018991465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008982602.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014739913.1
COORDINATES: protein motif:HMM:NF039927.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692549.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695032.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235091.1
COORDINATES: similar to AA sequence:RefSeq:WP_020284615.1
COORDINATES: similar to AA sequence:RefSeq:WP_018153113.1
COORDINATES: similar to AA sequence:RefSeq:WP_009637199.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:NF025697.2
COORDINATES: similar to AA sequence:RefSeq:WP_013703861.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012693127.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887075.1
GO:0008452 - RNA ligase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017870604.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870605.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586108.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586107.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586106.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586105.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695019.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695021.1
IS982-like element ISDds4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010886939.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018851897.1
COORDINATES: similar to AA sequence:RefSeq:WP_015237390.1
BMP family ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF017870.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695755.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587437.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588506.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556888.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015231554.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694683.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235918.1
COORDINATES: protein motif:HMM:NF012925.2
COORDINATES: similar to AA sequence:RefSeq:WP_019585284.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011525710.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525711.1
COORDINATES: similar to AA sequence:RefSeq:WP_017593089.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525714.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525716.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525810.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_007683979.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015951572.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695046.1
HTH-type transcriptional regulator DdrOP3
COORDINATES: similar to AA sequence:RefSeq:WP_009108669.1
delta(1)-pyrroline-2-carboxylate reductase family protein
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF013539.2
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015231347.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231348.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231349.1
COORDINATES: similar to AA sequence:RefSeq:WP_012871458.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236384.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585610.1
COORDINATES: similar to AA sequence:RefSeq:WP_013731159.1
COORDINATES: similar to AA sequence:RefSeq:WP_014259896.1
GO:0003885 - D-arabinono-1,4-lactone oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_016876802.1
COORDINATES: similar to AA sequence:RefSeq:WP_015184469.1
TIGR03885 family FMN-dependent LLM class oxidoreductase
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012694523.1
COORDINATES: similar to AA sequence:RefSeq:WP_013702943.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF013736.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019009289.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009288.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010741.1
COORDINATES: protein motif:HMM:NF012580.2
COORDINATES: similar to AA sequence:RefSeq:WP_018059756.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]; GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
YbaL family putative K(+) efflux transporter
COORDINATES: similar to AA sequence:RefSeq:WP_019011668.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011669.1
COORDINATES: similar to AA sequence:RefSeq:WP_003236618.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587563.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695078.1
IS982-like element ISDds5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014686666.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_011525804.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864785.1
GO:0015267 - channel activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525801.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008360.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694997.1
COORDINATES: protein motif:HMM:NF024701.2
COORDINATES: similar to AA sequence:RefSeq:WP_008005549.1
COORDINATES: protein motif:HMM:NF021214.2
COORDINATES: similar to AA sequence:RefSeq:WP_016692194.1
COORDINATES: similar to AA sequence:RefSeq:WP_015127721.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556448.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556449.1
COORDINATES: similar to AA sequence:RefSeq:WP_020523834.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529929.1
tRNA-binding-domain-containing CsaA-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_008121103.1
COORDINATES: similar to AA sequence:RefSeq:WP_008121101.1
COORDINATES: similar to AA sequence:RefSeq:WP_008121100.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235827.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694472.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019008420.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586711.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555504.1
COORDINATES: protein motif:HMM:NF015551.2
GO:0042925 - benzoate transmembrane transporter activity [Evidence IEA]
GO:0042919 - benzoate transport [Evidence IEA]
benzoate/H(+) symporter BenE family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_019010867.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231545.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235159.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235160.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231552.1
GO:0046872 - metal ion binding [Evidence IEA]
zinc ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695272.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231550.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015231549.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231548.1
COORDINATES: similar to AA sequence:RefSeq:WP_013157138.1
COORDINATES: similar to AA sequence:RefSeq:WP_018890797.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231609.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231610.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236680.1
COORDINATES: similar to AA sequence:RefSeq:WP_013616030.1