Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Dietziaceae; Dietzia.
Complete genome sequence of Dietzia lutea YIM 80766T, a strain isolated from desert soil in Egypt
Submitted (27-APR-2016) College of Engineering, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing, Beijing 100871, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP015451.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP Assembley 3 in SMRT analysis v. 2.3\nGenome Coverage :: 169.35x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:02:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,685\nCDSs (total) :: 3,620\nGenes (coding) :: 3,531\nCDSs (with protein) :: 3,531\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 89\nCDSs (without protein) :: 89\nPseudo Genes (ambiguous residues) :: 0 of 89\nPseudo Genes (frameshifted) :: 40 of 89\nPseudo Genes (incomplete) :: 58 of 89\nPseudo Genes (internal stop) :: 7 of 89\nPseudo Genes (multiple problems) :: 13 of 89\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
TM0106 family RecB-like putative nuclease
COORDINATES: similar to AA sequence:RefSeq:WP_007626147.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007626149.1
COORDINATES: protein motif:HMM:NF028358.2
neutral/alkaline non-lysosomal ceramidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011596523.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR03491.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF040114.1
COORDINATES: protein motif:HMM:NF016149.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010539873.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013530.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024950.2