Streptomyces venezuelae strain NRRL B-65442 plasmid unnamed.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Genome sequence of Streptomyces venezuelae NRRL B-65442
Submitted (14-NOV-2016) Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, Norfolk NR4 7UH, United Kingdom (Great Britain)
REFSEQ INFORMATION: The reference sequence is identical to\nCP018075.1.\nNo terminal inverted repeats so not clear that it is complete.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 31-AUG-2015\nAssembly Method :: HGAP3 within SMRT Pipe v. 1.87.139483\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 155.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 04:54:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,610\nCDSs (total) :: 7,514\nGenes (coding) :: 7,417\nCDSs (with protein) :: 7,417\nGenes (RNA) :: 96\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 3\nPseudo Genes (total) :: 98\nCDSs (without protein) :: 97\nPseudo Genes (ambiguous residues) :: 0 of 98\nPseudo Genes (frameshifted) :: 30 of 98\nPseudo Genes (incomplete) :: 76 of 98\nPseudo Genes (internal stop) :: 7 of 98\nPseudo Genes (multiple problems) :: 14 of 98\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_018565838.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019889402.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014677576.1
COORDINATES: similar to AA sequence:RefSeq:WP_008749772.1
COORDINATES: similar to AA sequence:RefSeq:WP_018352102.1
COORDINATES: similar to AA sequence:RefSeq:WP_012180833.1
COORDINATES: similar to AA sequence:RefSeq:WP_008749770.1
COORDINATES: similar to AA sequence:RefSeq:WP_008749769.1
COORDINATES: similar to AA sequence:RefSeq:WP_008749768.1
COORDINATES: similar to AA sequence:RefSeq:WP_003995098.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014668660.1
COORDINATES: similar to AA sequence:RefSeq:WP_006139026.1
COORDINATES: similar to AA sequence:RefSeq:WP_016438275.1
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_010042642.1
helicase associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019061596.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025669.2
COORDINATES: similar to AA sequence:RefSeq:WP_019068254.1
COORDINATES: similar to AA sequence:RefSeq:WP_006378616.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003977829.1
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: protein motif:HMM:NF014941.2
endonuclease VII domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020124411.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106288.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008742102.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523893.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329412.1
COORDINATES: similar to AA sequence:RefSeq:WP_003964242.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377746.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828477.1
COORDINATES: similar to AA sequence:RefSeq:WP_004994192.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018522336.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261809.1
COORDINATES: similar to AA sequence:RefSeq:WP_018385912.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004921137.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600011.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014912324.1
COORDINATES: similar to AA sequence:RefSeq:WP_015031872.1
COORDINATES: similar to AA sequence:RefSeq:WP_015037266.1
COORDINATES: similar to AA sequence:RefSeq:WP_001527024.1
COORDINATES: similar to AA sequence:RefSeq:WP_017238383.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558180.1
COORDINATES: similar to AA sequence:RefSeq:WP_010042677.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017950101.1
COORDINATES: similar to AA sequence:RefSeq:WP_014135502.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522718.1
COORDINATES: protein motif:HMM:NF015297.2
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_018955462.1
COORDINATES: similar to AA sequence:RefSeq:WP_007076165.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010359205.1
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_004993803.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018510066.1
COORDINATES: protein motif:HMM:NF040391.1
COORDINATES: similar to AA sequence:RefSeq:WP_017238179.1
COORDINATES: similar to AA sequence:RefSeq:WP_009717709.1
COORDINATES: similar to AA sequence:RefSeq:WP_018539062.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008742142.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: similar to AA sequence:RefSeq:WP_018523884.1
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: similar to AA sequence:RefSeq:WP_018520744.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_017237988.1
COORDINATES: protein motif:HMM:NF012260.2
COORDINATES: similar to AA sequence:RefSeq:WP_004980428.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377634.1
COORDINATES: similar to AA sequence:RefSeq:WP_006139034.1
COORDINATES: similar to AA sequence:RefSeq:WP_005313673.1
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012380001.1
COORDINATES: similar to AA sequence:RefSeq:WP_015037350.1
COORDINATES: protein motif:HMM:NF017832.2
COORDINATES: similar to AA sequence:RefSeq:WP_018523908.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074365.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523902.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449488.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039386.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011039387.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011039388.1
COORDINATES: protein motif:HMM:NF012610.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007830732.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677467.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505218.1
COORDINATES: similar to AA sequence:RefSeq:WP_018563321.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043592.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677476.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449476.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109701.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329446.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109703.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505690.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449470.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505686.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449468.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329452.1
RRQRL motif-containing zinc-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018569241.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677507.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449460.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569232.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039414.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830774.1
histone-like nucleoid-structuring protein Lsr2
COORDINATES: similar to AA sequence:RefSeq:WP_006143063.1
COORDINATES: similar to AA sequence:RefSeq:WP_019887596.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554133.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449450.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014670176.1
COORDINATES: similar to AA sequence:RefSeq:WP_014670178.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_014690412.1
COORDINATES: similar to AA sequence:RefSeq:WP_014172614.1
COORDINATES: similar to AA sequence:RefSeq:WP_003963877.1
sigma-70 family RNA polymerase sigma factor