Rhodococcus opacus PD630 plasmid pRoPD630_3, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus.
Submitted (07-AUG-2021) Department of Pharmacy and Biotechnology, University of Bologna, Via Irnerio, 42, Bologna 40126, Italy
REFSEQ INFORMATION: The reference sequence is identical to\nCP080957.1.\nBacteria and source DNA available from culture collection\nidentifier: DSMZ 44193.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 2.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 438.9x\nSequencing Technology :: Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/29/2022 07:59:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 8,336\nCDSs (total) :: 8,270\nGenes (coding) :: 8,070\nCDSs (with protein) :: 8,070\nGenes (RNA) :: 66\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 200\nCDSs (without protein) :: 200\nPseudo Genes (ambiguous residues) :: 0 of 200\nPseudo Genes (frameshifted) :: 118 of 200\nPseudo Genes (incomplete) :: 123 of 200\nPseudo Genes (internal stop) :: 14 of 200\nPseudo Genes (multiple problems) :: 48 of 200\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Germany: gas-works plant 10 km north of Gottingen
COORDINATES: similar to AA sequence:RefSeq:WP_005249419.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005249418.1
COORDINATES: similar to AA sequence:RefSeq:WP_005567559.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011210843.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012691871.1
DnaB-like helicase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007734781.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212305.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_009480744.1
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: similar to AA sequence:RefSeq:WP_011212346.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011212348.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212350.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212351.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212352.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212354.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212356.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212357.1
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_020171094.1
COORDINATES: similar to AA sequence:RefSeq:WP_013798101.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_005245070.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691826.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013287372.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011599905.1
COORDINATES: similar to AA sequence:RefSeq:WP_016456418.1
COORDINATES: protein motif:HMM:NF036700.2
COORDINATES: similar to AA sequence:RefSeq:WP_011212312.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249412.1
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_013827699.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253039.1
COORDINATES: similar to AA sequence:RefSeq:WP_013827697.1
Swt1 family HEPN domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019511228.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249408.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213210.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011600422.1
COORDINATES: similar to AA sequence:RefSeq:WP_016882006.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475924.1
COORDINATES: similar to AA sequence:RefSeq:WP_003944658.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.