Haloterrigena turkmenica DSM 5511 plasmid pHTUR05, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.
Complete genome sequence of Haloterrigena turkmenica type strain (4k)
Submitted (11-JAN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001865.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4082988\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Haloterrigena turkmenica VKM, DSM 5511\nCulture Collection ID :: DSM 5511, VKM B-1734\nGOLD Stamp ID :: Gi02245\nGreengenes ID :: 665\nFunding Program :: DOE-GEBA 2007\nTemperature Range :: Mesophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/28/2022 03:13:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,283\nCDSs (total) :: 5,221\nGenes (coding) :: 5,061\nCDSs (with protein) :: 5,061\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 160\nCDSs (without protein) :: 160\nPseudo Genes (ambiguous residues) :: 0 of 160\nPseudo Genes (frameshifted) :: 76 of 160\nPseudo Genes (incomplete) :: 114 of 160\nPseudo Genes (internal stop) :: 45 of 160\nPseudo Genes (multiple problems) :: 63 of 160\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006187035.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012943132.1
type IV pilin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006182346.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006671477.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876082.1
COORDINATES: similar to AA sequence:RefSeq:WP_006671474.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006671473.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876079.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876073.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665481.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665482.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111386.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876069.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111399.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111400.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111401.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876066.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111405.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665490.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665491.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139939.1
helix-hairpin-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007141421.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024555.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: similar to AA sequence:RefSeq:WP_006107496.1
COORDINATES: similar to AA sequence:RefSeq:WP_006168578.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876039.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430276.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187076.1
COORDINATES: similar to AA sequence:RefSeq:WP_006673610.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187069.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876027.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665509.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187068.1
COORDINATES: protein motif:HMM:NF019407.2
COORDINATES: similar to AA sequence:RefSeq:WP_013876023.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413617.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876021.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876010.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018259312.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430236.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430235.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187049.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008451607.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005576758.1
COORDINATES: similar to AA sequence:RefSeq:WP_006664187.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451612.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827268.1
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: similar to AA sequence:RefSeq:WP_008423518.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451626.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217554.1
COORDINATES: similar to AA sequence:RefSeq:WP_005043468.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430213.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557311.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875989.1