Haloterrigena turkmenica DSM 5511 plasmid pHTUR04, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.
Complete genome sequence of Haloterrigena turkmenica type strain (4k)
Submitted (11-JAN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001864.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4082988\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Haloterrigena turkmenica VKM, DSM 5511\nCulture Collection ID :: DSM 5511, VKM B-1734\nGOLD Stamp ID :: Gi02245\nGreengenes ID :: 665\nFunding Program :: DOE-GEBA 2007\nTemperature Range :: Mesophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/28/2022 03:13:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,283\nCDSs (total) :: 5,221\nGenes (coding) :: 5,061\nCDSs (with protein) :: 5,061\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 160\nCDSs (without protein) :: 160\nPseudo Genes (ambiguous residues) :: 0 of 160\nPseudo Genes (frameshifted) :: 76 of 160\nPseudo Genes (incomplete) :: 114 of 160\nPseudo Genes (internal stop) :: 45 of 160\nPseudo Genes (multiple problems) :: 63 of 160\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006664184.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014863628.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_004214697.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007142911.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895555.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895554.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895553.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827914.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008895551.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895549.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895548.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895546.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895545.1
type II/IV secretion system ATPase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008895544.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945994.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895542.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184310.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006431302.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_006825583.1
COORDINATES: similar to AA sequence:RefSeq:WP_006663988.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895537.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008159046.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067339.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559009.1
GO:0004765 - shikimate kinase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091113.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261165.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005556424.1
COORDINATES: similar to AA sequence:RefSeq:WP_007697029.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_006091109.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895528.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179533.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895525.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091105.1
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_007109271.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895521.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895520.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881987.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946018.1
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895514.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895513.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453202.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091093.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008895510.1
monovalent cation/H+ antiporter subunit D family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946024.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946025.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109263.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895506.1
GO:0005451 - monovalent cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_006431472.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946029.1
monovalent cation/H+ antiporter subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_012946030.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895502.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067402.1
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012944557.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091079.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946036.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006222 - UMP biosynthetic process [Evidence IEA]
quinone-dependent dihydroorotate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012946037.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946038.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946039.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895494.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091071.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946043.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109247.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109246.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895651.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895650.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946048.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091062.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091061.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261592.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895645.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895644.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946054.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431222.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895641.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946057.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067370.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091051.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895636.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895635.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895634.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261605.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014863798.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895631.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431234.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091043.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179444.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696620.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006664155.1
2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_008895623.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946072.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_008895620.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895619.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895618.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863655.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091009.1
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008895614.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067349.1
COORDINATES: similar to AA sequence:RefSeq:WP_006185974.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895611.1
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946083.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895609.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895608.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158847.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880601.1
peptidase M10A and M12B matrixin and adamalysin
COORDINATES: similar to AA sequence:RefSeq:WP_008895605.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895604.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895603.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179641.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184412.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895599.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895598.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895597.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090961.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895594.1
PGF-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895593.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864157.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895591.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090953.1
protein sorting system archaetidylserine decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_006067194.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895587.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261503.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895586.1
COORDINATES: similar to AA sequence:RefSeq:WP_008850135.1
COORDINATES: similar to AA sequence:RefSeq:WP_007187798.1
COORDINATES: similar to AA sequence:RefSeq:WP_006167171.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090937.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895583.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524254.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946115.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946116.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946117.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895576.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895575.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654419.1
COORDINATES: similar to AA sequence:RefSeq:WP_005575957.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453299.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067264.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895570.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431438.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895568.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895567.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895566.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895565.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946131.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090889.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946133.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895561.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261676.1