Haloterrigena turkmenica DSM 5511 plasmid pHTUR03, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.
Complete genome sequence of Haloterrigena turkmenica type strain (4k)
Submitted (11-JAN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001863.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4082988\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Haloterrigena turkmenica VKM, DSM 5511\nCulture Collection ID :: DSM 5511, VKM B-1734\nGOLD Stamp ID :: Gi02245\nGreengenes ID :: 665\nFunding Program :: DOE-GEBA 2007\nTemperature Range :: Mesophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/28/2022 03:13:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,283\nCDSs (total) :: 5,221\nGenes (coding) :: 5,061\nCDSs (with protein) :: 5,061\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 160\nCDSs (without protein) :: 160\nPseudo Genes (ambiguous residues) :: 0 of 160\nPseudo Genes (frameshifted) :: 76 of 160\nPseudo Genes (incomplete) :: 114 of 160\nPseudo Genes (internal stop) :: 45 of 160\nPseudo Genes (multiple problems) :: 63 of 160\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015298873.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945562.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_006431758.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007979205.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012942443.1
COORDINATES: similar to AA sequence:RefSeq:WP_006089011.1
COORDINATES: similar to AA sequence:RefSeq:WP_015323308.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005558327.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
GO:0015074 - DNA integration [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035011.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107200.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945183.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890462.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014053521.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945184.1
COORDINATES: similar to AA sequence:RefSeq:WP_005556443.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648274.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945194.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895897.1
COORDINATES: similar to AA sequence:RefSeq:WP_007110124.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257617.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945131.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004267706.1
rubrerythrin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008015343.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945833.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091967.1
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014251091.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557823.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945919.1
COORDINATES: similar to AA sequence:RefSeq:WP_008425351.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651706.1
COORDINATES: protein motif:HMM:NF012398.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007140036.1
COORDINATES: protein motif:HMM:TIGR00813.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090747.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016831.2
helix-turn-helix domain-containing protein
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008422355.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419387.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422353.1
COORDINATES: similar to AA sequence:RefSeq:WP_004054154.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008893174.1
COORDINATES: similar to AA sequence:RefSeq:WP_013879473.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945662.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945582.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035684.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008364336.1
COORDINATES: similar to AA sequence:RefSeq:WP_015910934.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652464.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: similar to AA sequence:RefSeq:WP_012772035.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630550.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006666898.1
COORDINATES: similar to AA sequence:RefSeq:WP_014052684.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_007142428.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_011324024.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013061674.1
COORDINATES: similar to AA sequence:RefSeq:WP_006629965.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289547.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904154.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111360.1
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_006067313.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945884.1
COORDINATES: similar to AA sequence:RefSeq:WP_012943125.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043378.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111135.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433244.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423716.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008321236.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890437.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890438.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945891.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890440.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006630762.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524569.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107559.1
COORDINATES: similar to AA sequence:RefSeq:WP_007993908.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865572.1
COORDINATES: similar to AA sequence:RefSeq:WP_013878465.1
COORDINATES: similar to AA sequence:RefSeq:WP_012941838.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576789.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260922.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419452.1
COORDINATES: similar to AA sequence:RefSeq:WP_008386898.1
COORDINATES: similar to AA sequence:RefSeq:WP_008425301.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666459.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945908.1
COORDINATES: similar to AA sequence:RefSeq:WP_008164830.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182411.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825912.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825917.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111152.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667070.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667031.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825922.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825923.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825924.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111162.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421987.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825928.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111165.1
COORDINATES: similar to AA sequence:RefSeq:WP_015301027.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423191.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667050.1
SWIM zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945934.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006067203.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024997.2
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005038645.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006054555.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612288.1
COORDINATES: protein motif:HMM:NF019884.2
COORDINATES: similar to AA sequence:RefSeq:WP_008892579.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421961.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006667023.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216174.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488178.1
COORDINATES: similar to AA sequence:RefSeq:WP_008312240.1
COORDINATES: protein motif:HMM:NF012600.2
COORDINATES: similar to AA sequence:RefSeq:WP_006183447.1
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:WP_008895891.1
COORDINATES: similar to AA sequence:RefSeq:WP_012942773.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0042398 - cellular modified amino acid biosynthetic process [Evidence IEA]
glutamate-cysteine ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289254.1
COORDINATES: similar to AA sequence:RefSeq:WP_008009005.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_006667010.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432512.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945964.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825891.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825892.1
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: similar to AA sequence:RefSeq:WP_006111192.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667002.1
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: similar to AA sequence:RefSeq:WP_006111197.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825899.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111199.1
COORDINATES: protein motif:HMM:NF013964.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945620.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649288.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_012941537.1
PGF-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892896.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein