Roseovarius indicus strain DSM 26383 plasmid pRIdsm_04, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseovarius.
Genetic Globetrotter - A new plasmid hitch-hiking vast phylogenetic and geographic distances
Submitted (12-AUG-2018) Single Cell Genomics, Leibniz Institute DSMZ, Inhoffenstr. 8, Brunswick 38126, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP031602.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: FEB-2018\nAssembly Method :: HGAP v. 3\nAssembly Name :: DSMZ_RIdsm\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:27:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,061\nCDSs (total) :: 6,008\nGenes (coding) :: 5,922\nCDSs (with protein) :: 5,922\nGenes (RNA) :: 53\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 25 of 86\nPseudo Genes (incomplete) :: 60 of 86\nPseudo Genes (internal stop) :: 16 of 86\nPseudo Genes (multiple problems) :: 15 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Qiliang Lai, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China
COORDINATES: similar to AA sequence:RefSeq:WP_006115964.1
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013833376.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009175426.1
sulfurtransferase/chromate resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_009175531.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF041496.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824546.1