Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseovarius.
Genetic Globetrotter - A new plasmid hitch-hiking vast phylogenetic and geographic distances
Submitted (12-AUG-2018) Single Cell Genomics, Leibniz Institute DSMZ, Inhoffenstr. 8, Brunswick 38126, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP031599.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: FEB-2018\nAssembly Method :: HGAP v. 3\nAssembly Name :: DSMZ_RIdsm\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:27:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,061\nCDSs (total) :: 6,008\nGenes (coding) :: 5,922\nCDSs (with protein) :: 5,922\nGenes (RNA) :: 53\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 25 of 86\nPseudo Genes (incomplete) :: 60 of 86\nPseudo Genes (internal stop) :: 16 of 86\nPseudo Genes (multiple problems) :: 15 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Qiliang Lai, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China
COORDINATES: similar to AA sequence:RefSeq:WP_012187363.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008840017.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956874.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807542.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020818725.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017183284.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449375.1
COORDINATES: similar to AA sequence:RefSeq:WP_012115013.1
zincin-like metallopeptidase domain-containing protein
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040380.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187358.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807539.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009820261.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803591.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807536.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503768.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327427.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187348.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187112.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187346.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803576.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803574.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819806.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007803570.1
mercury resistance system transport protein MerF
COORDINATES: similar to AA sequence:RefSeq:WP_007803569.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803565.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009209168.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007811882.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807941.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820257.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536569.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120663.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807938.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807937.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009815557.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400291.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815559.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815560.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815561.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808070.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327391.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820228.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327387.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536592.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807512.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820232.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120678.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807508.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007191299.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009494081.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327373.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_009808058.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327370.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187165.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803471.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120600.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012187317.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065816.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612407.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827262.1
COORDINATES: similar to AA sequence:RefSeq:WP_012180151.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807971.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613342.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187183.1
COORDINATES: similar to AA sequence:RefSeq:WP_008182253.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335980.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009808026.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808025.1
COORDINATES: protein motif:HMM:NF020859.2
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803284.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819590.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008335622.1
COORDINATES: protein motif:HMM:NF024606.2
TerB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF026952.2
COORDINATES: similar to AA sequence:RefSeq:WP_007011034.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336138.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012114967.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501442.1
COORDINATES: similar to AA sequence:RefSeq:WP_011500463.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875254.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488599.1
COORDINATES: protein motif:HMM:NF025808.2
multiubiquitin domain-containing protein
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: protein motif:HMM:NF039808.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336057.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328216.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875060.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910861.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]
GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009506401.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009803886.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121180.1
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296961.1
GO:0008168 - methyltransferase activity [Evidence IEA]
trimethylamine methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009812756.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011536738.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011970278.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009028971.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_017927528.1
COORDINATES: protein motif:HMM:NF024600.2
COORDINATES: similar to AA sequence:RefSeq:WP_008674675.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_006466126.1
COORDINATES: protein motif:HMM:NF001419.0
GO:0047134 - protein-disulfide reductase (NAD(P)) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_012643537.1
COORDINATES: similar to AA sequence:RefSeq:WP_008833701.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660893.1
COORDINATES: similar to AA sequence:RefSeq:WP_008553622.1
hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014283753.1
COORDINATES: similar to AA sequence:RefSeq:WP_008548472.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014874013.1
COORDINATES: similar to AA sequence:RefSeq:WP_014283756.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008208106.1
COORDINATES: similar to AA sequence:RefSeq:WP_010437549.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019052766.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_026155209.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817807.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503126.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819962.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015225 - biotin transmembrane transporter activity [Evidence IEA]
GO:0015878 - biotin transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009803477.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009803478.1
biotin carboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009803479.1
crotonase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819966.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009803481.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009803484.1
COORDINATES: similar to AA sequence:RefSeq:WP_016848399.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803486.1
transferase hexapeptide repeat family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020648026.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503116.1
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009503115.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803490.1
acyclic terpene utilization AtuA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009503113.1
COORDINATES: similar to AA sequence:RefSeq:WP_007574730.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503111.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803494.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803495.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803496.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803497.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803498.1
COORDINATES: similar to AA sequence:RefSeq:WP_003815607.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803500.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503105.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503104.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503103.1
COORDINATES: similar to AA sequence:RefSeq:WP_011270027.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803508.1
COORDINATES: similar to AA sequence:RefSeq:WP_017562879.1
NADPH-dependent 2,4-dienoyl-CoA reductase
COORDINATES: similar to AA sequence:RefSeq:WP_009803510.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803511.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819984.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504381.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803514.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504378.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819988.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504375.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009803518.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504372.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504370.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009504368.1
COORDINATES: protein motif:HMM:NF024850.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014684.2
branched-chain amino acid ABC transporter permease
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_008917694.1
COORDINATES: similar to AA sequence:RefSeq:WP_012248579.1
COORDINATES: similar to AA sequence:RefSeq:WP_006223316.1
COORDINATES: protein motif:HMM:NF014564.2
COORDINATES: similar to AA sequence:RefSeq:WP_009504611.1
COORDINATES: similar to AA sequence:RefSeq:WP_013391017.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504610.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_009504608.1
COORDINATES: similar to AA sequence:RefSeq:WP_005796378.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504606.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF015445.2
GO:0055085 - transmembrane transport [Evidence IEA]
TRAP transporter substrate-binding protein DctP
COORDINATES: protein motif:HMM:NF012656.2
COORDINATES: similar to AA sequence:RefSeq:WP_009504603.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009803534.1
COORDINATES: similar to AA sequence:RefSeq:WP_008167683.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504600.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803537.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504598.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803539.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504596.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803541.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009504593.1
Zn-ribbon domain-containing OB-fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_009504592.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803544.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009504590.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504589.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009504588.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803548.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009504586.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504585.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009504584.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504583.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009504581.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803554.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504579.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803556.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504577.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504576.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803559.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504574.1
C4-dicarboxylate TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009504572.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504570.1
COORDINATES: protein motif:HMM:NF014790.2
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: similar to AA sequence:RefSeq:WP_009504565.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504564.1
phenylacetate--CoA ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009504563.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803586.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819995.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803588.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803589.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819998.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819999.1
COORDINATES: similar to AA sequence:RefSeq:WP_017148819.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820001.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820002.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803595.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803596.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825319.1
COORDINATES: similar to AA sequence:RefSeq:WP_011046470.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009820006.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803600.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504324.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504326.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803604.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820012.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820013.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504332.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504333.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803535.1
COORDINATES: similar to AA sequence:RefSeq:WP_006934892.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006174421.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504349.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504351.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009504353.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504355.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014761855.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_009507231.1
COORDINATES: similar to AA sequence:RefSeq:WP_009507232.1
COORDINATES: similar to AA sequence:RefSeq:WP_009507233.1
COORDINATES: similar to AA sequence:RefSeq:WP_011350280.1
COORDINATES: similar to AA sequence:RefSeq:WP_009507235.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126090.1
COORDINATES: similar to AA sequence:RefSeq:WP_007679405.1
COORDINATES: protein motif:HMM:NF027439.2
COORDINATES: protein motif:HMM:NF036525.2
COORDINATES: similar to AA sequence:RefSeq:WP_009803450.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803451.1
COORDINATES: protein motif:HMM:NF013920.2
COORDINATES: similar to AA sequence:RefSeq:WP_009803454.1
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: similar to AA sequence:RefSeq:WP_013504070.1
COORDINATES: similar to AA sequence:RefSeq:WP_012205503.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827128.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827129.1
COORDINATES: similar to AA sequence:RefSeq:WP_011908829.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427389.1
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018264781.1
COORDINATES: similar to AA sequence:RefSeq:WP_019104956.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_009803442.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611339.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013761204.1
COORDINATES: similar to AA sequence:RefSeq:WP_007681362.1
TM0106 family RecB-like putative nuclease
COORDINATES: protein motif:HMM:NF025625.2
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: similar to AA sequence:RefSeq:WP_008336115.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398642.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001728.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008336095.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008336094.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138156.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859617.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859619.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859622.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336089.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859624.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139195.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139194.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574160.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336084.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574167.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001740.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336079.1
COORDINATES: similar to AA sequence:RefSeq:WP_009157799.1
COORDINATES: similar to AA sequence:RefSeq:WP_009466155.1
COORDINATES: protein motif:HMM:TIGR01928.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013539.2
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007802974.1
COORDINATES: similar to AA sequence:RefSeq:WP_007802977.1
COORDINATES: similar to AA sequence:RefSeq:WP_012871162.1
COORDINATES: similar to AA sequence:RefSeq:WP_008944136.1
COORDINATES: similar to AA sequence:RefSeq:WP_006614626.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF005710.0
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018302974.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859685.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803321.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336066.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_007803318.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859691.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574176.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803314.1
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009225518.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574187.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803302.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336055.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065919.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803282.1
COORDINATES: similar to AA sequence:RefSeq:WP_020038226.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803278.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820093.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335997.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065909.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803272.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001781.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009807475.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282890.1
GO:0045275 - respiratory chain complex III [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008282895.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_008282896.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_009573615.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009573616.1
COORDINATES: similar to AA sequence:RefSeq:WP_020042978.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030787.1
COORDINATES: similar to AA sequence:RefSeq:WP_005976862.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065819.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065820.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807488.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820193.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009820194.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819808.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009820196.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253816.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959907.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120885.1
COORDINATES: similar to AA sequence:RefSeq:WP_010968681.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820147.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820148.1
COORDINATES: protein motif:HMM:NF013488.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005613353.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005613354.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824511.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613358.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613360.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613361.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613363.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613364.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613366.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824503.1
DsbE family thiol:disulfide interchange protein
COORDINATES: similar to AA sequence:RefSeq:WP_009824502.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824501.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613371.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573583.1
COORDINATES: similar to AA sequence:RefSeq:WP_005666901.1
COORDINATES: similar to AA sequence:RefSeq:WP_005666899.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824496.1
COORDINATES: similar to AA sequence:RefSeq:WP_018991653.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008335971.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807474.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824455.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499460.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335977.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824453.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824452.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327468.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001709.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573528.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_005859475.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819736.1
COORDINATES: similar to AA sequence:RefSeq:WP_018329048.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187368.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331447.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503866.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012187365.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815512.1