Enterobacter mori strain ACYC.E9L plasmid pACYC.E9L, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter.
Complete genome sequence of Enterobacter mori ACYC.E9L, an augmentin-resistant strain from a freshwater stream in Hong kong
Submitted (29-JAN-2022) Shuyuan Molecular Biology Laboratory, The Independent Schools Foundation Academy, 1 Kong Sin Wan Road, Pokfulam, Hong Kong HK SAR, Hong Kong
REFSEQ INFORMATION: The reference sequence is identical to\nCP091780.1.\nBacteria and source DNA available from Dr. Simon D. J. Griffin,\nShuyuan Molecular Biology Laboratory, ISF Academy, 1 Kong Sin Road,\nPokfulam, Hong Kong.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 25-JAN-2022\nAssembly Method :: Unicycler v. 0.4.8-beta\nAssembly Name :: Allison_Enterobacter_mori_ACYC.E9L\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 72.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/30/2023 04:54:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,597\nCDSs (total) :: 4,480\nGenes (coding) :: 4,430\nCDSs (with protein) :: 4,430\nGenes (RNA) :: 117\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 8\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 24 of 50\nPseudo Genes (incomplete) :: 32 of 50\nPseudo Genes (internal stop) :: 10 of 50\nPseudo Genes (multiple problems) :: 14 of 50\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013087098.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007778977.1
COORDINATES: similar to AA sequence:RefSeq:WP_014172383.1
COORDINATES: similar to AA sequence:RefSeq:WP_014172382.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572036.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998898.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019685983.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015366515.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014069041.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017206.2
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011388220.1
COORDINATES: similar to AA sequence:RefSeq:WP_014069040.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850576.1
FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000952219.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_008460008.1
GO:0015288 - porin activity [Evidence IEA]
GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019081707.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020333167.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020333158.1
GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004141419.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012817651.1
GO:0018580 - nitronate monooxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001700886.1
COORDINATES: similar to AA sequence:RefSeq:WP_000793772.1
COORDINATES: similar to AA sequence:RefSeq:WP_000678527.1
COORDINATES: similar to AA sequence:RefSeq:WP_001290416.1
COORDINATES: similar to AA sequence:RefSeq:WP_000350636.1
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: similar to AA sequence:RefSeq:WP_017460058.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152337.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152339.1
COORDINATES: similar to AA sequence:RefSeq:WP_017694191.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014172326.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010260829.1
ParA family plasmid-partitioning AAA ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_014172324.1
COORDINATES: similar to AA sequence:RefSeq:WP_000807689.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229773.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229772.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:YP_005229768.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229767.1
plasmid partitioning/stability family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013087139.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087140.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211749.1
COORDINATES: similar to AA sequence:RefSeq:WP_001104903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087145.1
COORDINATES: similar to AA sequence:RefSeq:WP_008502215.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087149.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063852.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013087154.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572064.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087156.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015572066.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087158.1
COORDINATES: similar to AA sequence:RefSeq:WP_004146149.1
COORDINATES: similar to AA sequence:RefSeq:WP_004146150.1
COORDINATES: protein motif:HMM:NF036604.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005229741.1
type I toxin-antitoxin system Hok family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014063857.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087181.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087183.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013087184.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063967.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087187.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063864.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013087191.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324960.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087194.1
GO:0005576 - extracellular region [Evidence IEA]
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_008324958.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_013087196.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_015572089.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_013087198.1
F-type conjugal transfer pilus assembly protein TraB
COORDINATES: similar to AA sequence:RefSeq:WP_008325086.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_013087205.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087206.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572098.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_008325089.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_013087209.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572101.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087211.1
COORDINATES: similar to AA sequence:RefSeq:WP_008325098.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087213.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512885.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_013087215.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_013087216.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_013087217.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_013087218.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087219.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087220.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_013087221.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087222.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843239.1
conjugal transfer pilus assembly protein TraH
COORDINATES: similar to AA sequence:RefSeq:WP_014063895.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_015572111.1
COORDINATES: similar to AA sequence:RefSeq:WP_003018683.1
conjugal transfer complement resistance protein TraT
COORDINATES: similar to AA sequence:RefSeq:WP_015572115.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324886.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_008324884.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_015572118.1
COORDINATES: similar to AA sequence:RefSeq:NP_462552.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004187061.1
COORDINATES: similar to AA sequence:RefSeq:WP_001072358.1
COORDINATES: similar to AA sequence:RefSeq:WP_020484075.1
COORDINATES: similar to AA sequence:RefSeq:WP_020484076.1
COORDINATES: similar to AA sequence:RefSeq:WP_017393312.1
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611902.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.