Thermococcus peptonophilus strain OG-1 plasmid unnamed, complete sequence.
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.
Submitted (11-MAR-2016) Umr 5240 Microbiologie, Adaptation et Pathogenie, Institut des Sciences Appliquees de Lyon, 11 Avenue Jean Capelle, Batiment Pasteur, Villeurbanne, Rhone 69621, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP014751.1.\nplasmid.\nSource DNA available from the Oger lab, UMR5240, INSA de Lyon,\nbatiment Pasteur, 11 rue Jean Capelle, 69621 Villeurbanne cedex,\nFrance.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newlber v. 2.8; MIRA v. 4\nGenome Coverage :: 200x\nSequencing Technology :: 454; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 03:09:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,101\nCDSs (total) :: 2,049\nGenes (coding) :: 2,024\nCDSs (with protein) :: 2,024\nGenes (RNA) :: 52\nrRNAs :: 2, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 13 of 25\nPseudo Genes (incomplete) :: 14 of 25\nPseudo Genes (internal stop) :: 1 of 25\nPseudo Genes (multiple problems) :: 3 of 25\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Thermococcus peptonophilus
COORDINATES: protein motif:HMM:NF013607.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011249793.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0009986 - cell surface [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
LPXTG cell wall anchor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004069911.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013467649.1
COORDINATES: similar to AA sequence:RefSeq:WP_013905656.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013467651.1
COORDINATES: similar to AA sequence:RefSeq:WP_015849973.1
COORDINATES: similar to AA sequence:RefSeq:WP_013905614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011011867.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918846.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_015173095.1
COORDINATES: similar to AA sequence:RefSeq:WP_013467657.1
COORDINATES: similar to AA sequence:RefSeq:WP_013467658.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013467659.1
COORDINATES: similar to AA sequence:RefSeq:WP_004068018.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004068003.1
COORDINATES: similar to AA sequence:RefSeq:WP_015283431.1
COORDINATES: similar to AA sequence:RefSeq:WP_015858583.1
COORDINATES: similar to AA sequence:RefSeq:WP_014011610.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013467664.1
COORDINATES: similar to AA sequence:RefSeq:WP_013467665.1
COORDINATES: similar to AA sequence:RefSeq:WP_013467667.1
COORDINATES: similar to AA sequence:RefSeq:WP_013467668.1
COORDINATES: similar to AA sequence:RefSeq:WP_013467669.1
COORDINATES: similar to AA sequence:RefSeq:WP_013905646.1
COORDINATES: protein motif:HMM:NF027473.2
COORDINATES: similar to AA sequence:RefSeq:WP_015868506.1
COORDINATES: similar to AA sequence:RefSeq:WP_017950738.1
COORDINATES: similar to AA sequence:RefSeq:WP_011973056.1
COORDINATES: similar to AA sequence:RefSeq:WP_013905641.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_004067998.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013905639.1
COORDINATES: similar to AA sequence:RefSeq:WP_013905638.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013905637.1
COORDINATES: similar to AA sequence:RefSeq:WP_013905635.1
COORDINATES: similar to AA sequence:RefSeq:WP_013905634.1
COORDINATES: similar to AA sequence:RefSeq:WP_011011846.1
COORDINATES: protein motif:HMM:NF022972.2
COORDINATES: similar to AA sequence:RefSeq:WP_012940750.1
COORDINATES: similar to AA sequence:RefSeq:WP_012571431.1
COORDINATES: similar to AA sequence:RefSeq:WP_011011830.1