Lacticaseibacillus paracasei subsp. paracasei 8700:2 plasmid 2, complete sequence.
Lacticaseibacillus paracasei subsp. paracasei 8700:2
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus.
The Genome Sequence of Lactobacillus paracasei subsp. paracasei strain 8700:2
Submitted (14-DEC-2010) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA
Submitted (13-AUG-2008) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002393.1.\nThis is a reference genome for the Human Microbiome Project. This\nproject is co-owned with the Human Microbiome Project DACC.\nSource DNA provided by Saulnier, D. (Baylor College of Medicine,\nUSA).\nBacteria provided by Saulnier, D., Antonsson, M., and Molin, G.\n(Baylor College of Medicine, USA).\nAnnotation done by GeneMark; Glimmer; Metagene; PFAM; Blast to\nnon-redundant protein database; Manual curation.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.1-PreRelease-4/28/2009\nGenome Coverage :: missing\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/21/2022 01:51:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,938\nCDSs (total) :: 2,861\nGenes (coding) :: 2,803\nCDSs (with protein) :: 2,803\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 35 of 58\nPseudo Genes (incomplete) :: 19 of 58\nPseudo Genes (internal stop) :: 8 of 58\nPseudo Genes (multiple problems) :: 4 of 58\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003660088.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004559982.1
COORDINATES: protein motif:HMM:NF037639.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SpaA isopeptide-forming pilin-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_016388584.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003570604.1
COORDINATES: similar to AA sequence:RefSeq:WP_016388775.1
COORDINATES: similar to AA sequence:RefSeq:WP_016379708.1
COORDINATES: similar to AA sequence:RefSeq:WP_003570610.1
COORDINATES: similar to AA sequence:RefSeq:WP_016386558.1
COORDINATES: similar to AA sequence:RefSeq:WP_003570615.1
COORDINATES: similar to AA sequence:RefSeq:WP_016388590.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003585727.1
COORDINATES: similar to AA sequence:RefSeq:WP_016382951.1
COORDINATES: similar to AA sequence:RefSeq:WP_003660106.1
COORDINATES: similar to AA sequence:RefSeq:WP_016382284.1
COORDINATES: similar to AA sequence:RefSeq:WP_016382283.1
COORDINATES: similar to AA sequence:RefSeq:WP_019887479.1
COORDINATES: similar to AA sequence:RefSeq:WP_016364071.1
COORDINATES: similar to AA sequence:RefSeq:WP_016388594.1
COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003625174.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612319.1
COORDINATES: similar to AA sequence:RefSeq:WP_016385734.1
COORDINATES: similar to AA sequence:RefSeq:WP_003660216.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003606766.1
GO:0019197 - phosphoenolpyruvate-dependent sugar phosphotransferase complex [Evidence IEA]
GO:0015155 - lactose transmembrane transporter activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
lactose-specific PTS transporter subunit EIIC
COORDINATES: similar to AA sequence:RefSeq:WP_003589794.1
GO:0009341 - beta-galactosidase complex [Evidence IEA]
GO:0004565 - beta-galactosidase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003589792.1
PTS lactose/cellobiose transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_016497299.1
GO:0006825 - copper ion transport [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
CopY/TcrY family copper transport repressor
COORDINATES: similar to AA sequence:RefSeq:WP_003660027.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014333962.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005685191.1
ABC transporter permease/substrate-binding protein
glycine/betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_003589057.1
COORDINATES: similar to AA sequence:RefSeq:WP_003660036.1
COORDINATES: similar to AA sequence:RefSeq:WP_003586972.1
COORDINATES: similar to AA sequence:RefSeq:WP_003600318.1
COORDINATES: similar to AA sequence:RefSeq:WP_003586975.1
COORDINATES: similar to AA sequence:RefSeq:WP_003569634.1
COORDINATES: similar to AA sequence:RefSeq:WP_016363316.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_016388631.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016383741.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603517.1
COORDINATES: similar to AA sequence:RefSeq:WP_016387269.1
COORDINATES: similar to AA sequence:RefSeq:WP_003600575.1
COORDINATES: similar to AA sequence:RefSeq:WP_003679899.1
COORDINATES: similar to AA sequence:RefSeq:WP_003660060.1
COORDINATES: similar to AA sequence:RefSeq:WP_011101323.1
COORDINATES: similar to AA sequence:RefSeq:WP_016386691.1
COORDINATES: similar to AA sequence:RefSeq:WP_003660066.1
COORDINATES: similar to AA sequence:RefSeq:WP_003660068.1
COORDINATES: similar to AA sequence:RefSeq:WP_020751524.1
COORDINATES: similar to AA sequence:RefSeq:WP_003574021.1
COORDINATES: similar to AA sequence:RefSeq:WP_016383987.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016368519.1
COORDINATES: similar to AA sequence:RefSeq:WP_020751798.1
COORDINATES: similar to AA sequence:RefSeq:WP_003586220.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004559979.1
GO:0009986 - cell surface [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016383240.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016379506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004559981.1
COORDINATES: similar to AA sequence:RefSeq:WP_003660085.1