Lacticaseibacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence.
Lacticaseibacillus paracasei subsp. paracasei 8700:2
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus.
The Genome Sequence of Lactobacillus paracasei subsp. paracasei strain 8700:2
Submitted (14-DEC-2010) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA
Submitted (13-AUG-2008) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002392.1.\nThis is a reference genome for the Human Microbiome Project. This\nproject is co-owned with the Human Microbiome Project DACC.\nSource DNA provided by Saulnier, D. (Baylor College of Medicine,\nUSA).\nBacteria provided by Saulnier, D., Antonsson, M., and Molin, G.\n(Baylor College of Medicine, USA).\nAnnotation done by GeneMark; Glimmer; Metagene; PFAM; Blast to\nnon-redundant protein database; Manual curation.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.1-PreRelease-4/28/2009\nGenome Coverage :: missing\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/21/2022 01:51:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,938\nCDSs (total) :: 2,861\nGenes (coding) :: 2,803\nCDSs (with protein) :: 2,803\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 35 of 58\nPseudo Genes (incomplete) :: 19 of 58\nPseudo Genes (internal stop) :: 8 of 58\nPseudo Genes (multiple problems) :: 4 of 58\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014567979.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010620892.1
COORDINATES: similar to AA sequence:RefSeq:WP_007124583.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
COORDINATES: similar to AA sequence:RefSeq:WP_016511122.1
COORDINATES: similar to AA sequence:RefSeq:WP_014216292.1
COORDINATES: similar to AA sequence:RefSeq:WP_003680239.1
COORDINATES: similar to AA sequence:RefSeq:WP_016370337.1
CagC family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_014216295.1
COORDINATES: similar to AA sequence:RefSeq:WP_016381866.1
TrsD/TraD family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_003680243.1
COORDINATES: similar to AA sequence:RefSeq:WP_016370339.1
COORDINATES: similar to AA sequence:RefSeq:WP_003680247.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552815.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552816.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590784.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003712736.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003660147.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552820.1
COORDINATES: similar to AA sequence:RefSeq:WP_002825296.1
COORDINATES: similar to AA sequence:RefSeq:WP_002825295.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003660156.1
COORDINATES: similar to AA sequence:RefSeq:WP_002819865.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003680034.1
COORDINATES: similar to AA sequence:RefSeq:WP_010623258.1
COORDINATES: similar to AA sequence:RefSeq:WP_008212490.1