Lacticaseibacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence.
type: Entry
definition: Lacticaseibacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence.
sequence version: NC_022114.1
sequence date: 2022-12-29
sequence: sequence
division: CON
label: NC_022114.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02463682
keyword: RefSeq
source: Lacticaseibacillus paracasei subsp. paracasei 8700:2
organism: Lacticaseibacillus paracasei subsp. paracasei 8700:2
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002392.1.\nThis is a reference genome for the Human Microbiome Project. This\nproject is co-owned with the Human Microbiome Project DACC.\nSource DNA provided by Saulnier, D. (Baylor College of Medicine,\nUSA).\nBacteria provided by Saulnier, D., Antonsson, M., and Molin, G.\n(Baylor College of Medicine, USA).\nAnnotation done by GeneMark; Glimmer; Metagene; PFAM; Blast to\nnon-redundant protein database; Manual curation.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.1-PreRelease-4/28/2009\nGenome Coverage :: missing\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/21/2022 01:51:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,938\nCDSs (total) :: 2,861\nGenes (coding) :: 2,803\nCDSs (with protein) :: 2,803\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 35 of 58\nPseudo Genes (incomplete) :: 19 of 58\nPseudo Genes (internal stop) :: 8 of 58\nPseudo Genes (multiple problems) :: 4 of 58\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 24207
topology: circular
so has quality: SO_0000988
location: 1..24207
location: region:1-24207:1
RO_0002162: 537973

NC_022114
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02463682
type: BioSample
SIO_000068: biosample

1
title: The Genome Sequence of Lactobacillus paracasei subsp. paracasei strain 8700:2
author: Ward, D.
author: Earl, A.
author: Feldgarden, M.
author: Young, S.K.
author: Gargeya, S.
author: Zeng, Q.
author: Alvarado, L.
author: Berlin, A.
author: Bochicchio, J.
author: Chapman, S.B.
author: Chen, Z.
author: Freedman, E.
author: Gellesch, M.
author: Goldberg, J.
author: Griggs, A.
author: Gujja, S.
author: Heilman, E.
author: Heiman, D.
author: Howarth, C.
author: Mehta, T.
author: Neiman, D.
author: Pearson, M.
author: Roberts, A.
author: Saif, S.
author: Shea, T.
author: Shenoy, N.
author: Sisk, P.
author: Stolte, C.
author: Sykes, S.
author: White, J.
author: Yandava, C.
author: Saulnier, D.
author: Haas, B.
author: Nusbaum, C.
author: Birren, B.
journal: Unpublished

2
title: Direct Submission
author: Ward, D.
author: Earl, A.
author: Feldgarden, M.
author: Young, S.K.
author: Gargeya, S.
author: Zeng, Q.
author: Alvarado, L.
author: Berlin, A.
author: Bochicchio, J.
author: Chapman, S.B.
author: Chen, Z.
author: Freedman, E.
author: Gellesch, M.
author: Goldberg, J.
author: Griggs, A.
author: Gujja, S.
author: Heilman, E.
author: Heiman, D.
author: Howarth, C.
author: Mehta, T.
author: Neiman, D.
author: Pearson, M.
author: Roberts, A.
author: Saif, S.
author: Shea, T.
author: Shenoy, N.
author: Sisk, P.
author: Stolte, C.
author: Sykes, S.
author: White, J.
author: Yandava, C.
author: Saulnier, D.
author: Haas, B.
author: Nusbaum, C.
author: Birren, B.
journal: Submitted (14-DEC-2010) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA

3
title: Direct Submission
author: Antonsson, M.
author: Ward, D.
author: Shenoy, N.
author: Young, S.
author: Jaffe, D.
author: Gnerre, S.
author: Berlin, A.
author: Heiman, D.
author: Hepburn, T.
author: Shea, T.
author: Sykes, S.
author: Alvarado, L.
author: Kodira, C.
author: Lander, E.
author: Galagan, J.
author: Nusbaum, C.
author: Birren, B.
journal: Submitted (13-AUG-2008) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24207:1
position: 24207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24207:1:source
so part of: sequence
organism: Lacticaseibacillus paracasei subsp. paracasei 8700:2
mol type: genomic DNA
strain: 362.5013889
isolation source: biological product [ENVO:02000043]
host: Homo sapiens
sub species: paracasei
plasmid: 1

537973
type: Taxonomy
SIO_000068: taxonomy

LBPG_RS14310
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14310
old locus tag: LBPG_04100
so part of: sequence
location: 124..1227
location: region:124-1227:1
so has part: feature:124-1227:1:exon
subclass of: SO_0000010

57091509
type: Gene
SIO_000068: ncbigene

position:124:1
position: 124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1227:1
position: 1227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124-1227:1:exon

LBPG_RS14310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14310
old locus tag: LBPG_04100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014567979.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MDQTNFKFYQADNVYGALFFQFPKVLMYGEQYRHLSNDAKLAYMVLKDRLEYSLRNNWVDEDGNIYFVYTNAELMELFNSSEKTVIKIKKELEGLNLLRQKRMGFQPKAGKQLPNRLYLAGLDVQANDVYLRGEQSETPETLAARRTVNSTVQHDTVETLAARRTVNSTVQHDTVEKDAQTLAARRTVNSTVNLYKDSKNIDTNRYNIDTQKLDFSTANFSPAELEKQNQDLVHHANDFLTDEDSGLPVFLEPEAVQLLSFWCRTPQQMRRFIGIILNAKYRVEKDHKAIGVLIPLDDEELKPLMTKALRRYFNALRSNEKHIKNVENYLYGTMQNLFGVWWNKQAAREYAAKHPEEQNTDNERSWN
SIO_010081: LBPG_RS14310
subclass of: SO_0000673
so part of: LBPG_RS14310
location: 124..1227
location: region:124-1227:1
so has part: feature:124-1227:1:exon

WP_020967644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:124-1227:1:exon

LBPG_RS14315
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14315
old locus tag: LBPG_04101
so part of: sequence
location: 1631..1912
location: region:1631-1912:1
so has part: feature:1631-1912:1:exon
subclass of: SO_0000010

57091510
type: Gene
SIO_000068: ncbigene

position:1631:1
position: 1631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1912:1
position: 1912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1631-1912:1:exon

LBPG_RS14315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14315
old locus tag: LBPG_04101
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MAVKEKKRVQVQIDKELADNTEAVLSQLGLNPTTAINMFYKRIVANGALPFNVSLSEEERANLRFLKATKETPVTEFKDAKEVADWLNDPDED
SIO_010081: LBPG_RS14315
subclass of: SO_0000673
so part of: LBPG_RS14315
location: 1631..1912
location: region:1631-1912:1
so has part: feature:1631-1912:1:exon

WP_003660204.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1631-1912:1:exon

LBPG_RS14320
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14320
old locus tag: LBPG_04102
so part of: sequence
location: 1959..2144
location: region:1959-2144:1
so has part: feature:1959-2144:1:exon
subclass of: SO_0000010

57091511
type: Gene
SIO_000068: ncbigene

position:1959:1
position: 1959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2144:1
position: 2144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1959-2144:1:exon

LBPG_RS14320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14320
old locus tag: LBPG_04102
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDTIRINDFFEIAKETDLKDLLDKSLHEPDPEKRKVYDALYTYFLDKRQDEVIKRKDFVR
SIO_010081: LBPG_RS14320
subclass of: SO_0000673
so part of: LBPG_RS14320
location: 1959..2144
location: region:1959-2144:1
so has part: feature:1959-2144:1:exon

WP_041168821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1959-2144:1:exon

LBPG_RS14325
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14325
old locus tag: LBPG_04103
so part of: sequence
location: 2141..2821
location: region:2141-2821:1
so has part: feature:2141-2821:1:exon
subclass of: SO_0000010

57091512
type: Gene
SIO_000068: ncbigene

position:2141:1
position: 2141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2821:1
position: 2821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2141-2821:1:exon

LBPG_RS14325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14325
old locus tag: LBPG_04103
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007124583.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zeta toxin family protein
translation: MIDKPQYIIVAGINGAGKSTLYDTFPILFDKTKRINADELLRQMGGDWHKDSDNLKAMKEEIKQLHYALDHQQSIHVETTLAGRGKVQLNLIDKAHKNGFEVTLLYVALRDENLAIQRVNERVQKGGHGVPVATIKKRYQQSKHNLPLVAFKSDKVMIYDNSEKFTSVYAREKGQVFKNDLRHFPWINQNITYPEKVQKQLQNFADQNPEVKPKNDPENKNDRPSY
SIO_010081: LBPG_RS14325
subclass of: SO_0000673
so part of: LBPG_RS14325
location: 2141..2821
location: region:2141-2821:1
so has part: feature:2141-2821:1:exon

WP_003660201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2141-2821:1:exon

LBPG_RS14330
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14330
old locus tag: LBPG_04104
so part of: sequence
location: complement(2811..3089)
location: region:2811-3089:-1
so has part: feature:2811-3089:-1:exon
subclass of: SO_0000010

57091513
type: Gene
SIO_000068: ncbigene

position:2811:-1
position: 2811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3089:-1
position: 3089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2811-3089:-1:exon

LBPG_RS14330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14330
old locus tag: LBPG_04104
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQYEKLVEQQARLKQKIEREDFKLRQSKYYENRQARKARSRRLIQKGALLEKYFQADNLSVEQTEELLKTFADYVNAHKPDKLKNDQPNN
SIO_010081: LBPG_RS14330
subclass of: SO_0000673
so part of: LBPG_RS14330
location: complement(2811..3089)
location: region:2811-3089:-1
so has part: feature:2811-3089:-1:exon

WP_003603789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2811-3089:-1:exon

LBPG_RS14335
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14335
old locus tag: LBPG_04105
so part of: sequence
location: complement(3112..3339)
location: region:3112-3339:-1
so has part: feature:3112-3339:-1:exon
subclass of: SO_0000010

57091514
type: Gene
SIO_000068: ncbigene

position:3112:-1
position: 3112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3339:-1
position: 3339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3112-3339:-1:exon

LBPG_RS14335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14335
old locus tag: LBPG_04105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGGIVMSQSNLEKQEAKLKALNQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKQFSEFLKVKSVDH
SIO_010081: LBPG_RS14335
subclass of: SO_0000673
so part of: LBPG_RS14335
location: complement(3112..3339)
location: region:3112-3339:-1
so has part: feature:3112-3339:-1:exon

WP_003555660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3112-3339:-1:exon

LBPG_RS14340
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14340
old locus tag: LBPG_04106
so part of: sequence
location: 3592..5655
location: region:3592-5655:1
so has part: feature:3592-5655:1:exon
subclass of: SO_0000010

57091515
type: Gene
SIO_000068: ncbigene

position:3592:1
position: 3592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5655:1
position: 5655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3592-5655:1:exon

LBPG_RS14340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14340
old locus tag: LBPG_04106
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511122.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWNEVERKDRRSNSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNRPFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIPDRISEKSFENQGIDEVPTQHEGINSKRHERKEFNQQVKDYRKTKASYKNNQEKAINRGHLDSLSKHFSFNEKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLLMQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLKRAFPNGDLDDLSLGKQEQVYTAVMYYDPTLKPLKVETMEQWQANPPQVFSTQEHQLGLAYLSGQLSLDQLENHHLQRVLKHDGTKQIFFGECKVDPTIKNSQIEKIQKQLKEQQAKDDQYRKANIGHYQPLNYKPVSPDYYLKTAFSNAIMTALYARDEDYQRQKQARSLKETEWEMTKKQRQHQTRNRHEDGGMHL
SIO_010081: LBPG_RS14340
subclass of: SO_0000673
so part of: LBPG_RS14340
location: 3592..5655
location: region:3592-5655:1
so has part: feature:3592-5655:1:exon

WP_003660197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3592-5655:1:exon

LBPG_RS15880
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS15880
old locus tag: LBPG_04107
so part of: sequence
location: 5739..6065
location: region:5739-6065:1
so has part: feature:5739-6065:1:exon
subclass of: SO_0000010

57091644
type: Gene
SIO_000068: ncbigene

position:5739:1
position: 5739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6065:1
position: 6065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5739-6065:1:exon

LBPG_RS15880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS15880
old locus tag: LBPG_04107
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014216292.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKEEWYNLGQASQKLGRSRSYVSLWLRRHKGEVPENMILEGGKSKLISAQGIEWIRDRIKKEGVLVSNSSANGDQHLESQLLGVTLLTVHFTGWVRGTSREQLSRLI
SIO_010081: LBPG_RS15880
subclass of: SO_0000673
so part of: LBPG_RS15880
location: 5739..6065
location: region:5739-6065:1
so has part: feature:5739-6065:1:exon

WP_003660195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5739-6065:1:exon

LBPG_RS14350
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14350
old locus tag: LBPG_04108
so part of: sequence
location: 6079..6693
location: region:6079-6693:1
so has part: feature:6079-6693:1:exon
subclass of: SO_0000010

57091516
type: Gene
SIO_000068: ncbigene

position:6079:1
position: 6079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6693:1
position: 6693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6079-6693:1:exon

LBPG_RS14350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14350
old locus tag: LBPG_04108
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003680239.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVESWQGINGKLIHNGQKAIVVKDEQELADQDKLQDRLKQEGKPIDEVRKALIKNTVKRQIKTDPLKISSWFNRHQDSKNAKKTEKLVSDKPTHQYKQIKNEMTFFGESFLEGFLGFYGLEVDNALGRYEHNLHVLETQELGQSEKEYYLATSENGRVKLATDPLPSQQIAEEQLNKFYQREPEETQAEQIQLRTSEDDRKEE
SIO_010081: LBPG_RS14350
subclass of: SO_0000673
so part of: LBPG_RS14350
location: 6079..6693
location: region:6079-6693:1
so has part: feature:6079-6693:1:exon

WP_020967646.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6079-6693:1:exon

LBPG_RS14355
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14355
old locus tag: LBPG_04109
so part of: sequence
location: 6695..7030
location: region:6695-7030:1
so has part: feature:6695-7030:1:exon
subclass of: SO_0000010

57091517
type: Gene
SIO_000068: ncbigene

position:6695:1
position: 6695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7030:1
position: 7030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6695-7030:1:exon

LBPG_RS14355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14355
old locus tag: LBPG_04109
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016370337.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CagC family type IV secretion system protein
translation: MKFSKVKALATTGATAIYLGLMNAQVVLAADGGEVKSKLTSAGKTIQGILTGLVVLVGICVALFIIIKRMPDADDPREKSEVYHAVGRVAGLVALAAAIIWILPWVYSLFT
SIO_010081: LBPG_RS14355
subclass of: SO_0000673
so part of: LBPG_RS14355
location: 6695..7030
location: region:6695-7030:1
so has part: feature:6695-7030:1:exon

WP_003660303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6695-7030:1:exon

LBPG_RS14360
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14360
old locus tag: LBPG_04110
so part of: sequence
location: 7051..7413
location: region:7051-7413:1
so has part: feature:7051-7413:1:exon
subclass of: SO_0000010

57091518
type: Gene
SIO_000068: ncbigene

position:7051:1
position: 7051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7413:1
position: 7413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7051-7413:1:exon

LBPG_RS14360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14360
old locus tag: LBPG_04110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014216295.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKGKEFIFPENVDKDYGIWKDYTLKDFGYAALAGLVGLIFIAIPPYGLILVLIKIVIVVLAMTIVMAILTIRPVAARKNIKVRDNFNLKRRYANSQKLFYLKPKKRGELNAFEEEQNRQ
SIO_010081: LBPG_RS14360
subclass of: SO_0000673
so part of: LBPG_RS14360
location: 7051..7413
location: region:7051-7413:1
so has part: feature:7051-7413:1:exon

WP_003660301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7051-7413:1:exon

LBPG_RS14365
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14365
old locus tag: LBPG_04111
so part of: sequence
location: 7382..8041
location: region:7382-8041:1
so has part: feature:7382-8041:1:exon
subclass of: SO_0000010

57091519
type: Gene
SIO_000068: ncbigene

position:7382:1
position: 7382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8041:1
position: 8041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7382-8041:1:exon

LBPG_RS14365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14365
old locus tag: LBPG_04111
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016381866.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrsD/TraD family conjugative transfer protein
translation: MRLKKSKTANKSAKLDWDYQPPKINGGKQTIDDMSLVVGMYGNYEVTKTGNLVGILEVSGINLDLLNETEQQDVFEDYGAFLMSTLGEGVDDTLQFLEPTIPVNMTAYLNGLKRRYLALQKDHTEQQFKIQLIASYLDHFTKVQESKNMTTKQHLLIVKVPIKDKSVKSLNLAVTHLDEKIEQVKRDIENALTDFDVTAKVLTSQEVQEILKNLINFNG
SIO_010081: LBPG_RS14365
subclass of: SO_0000673
so part of: LBPG_RS14365
location: 7382..8041
location: region:7382-8041:1
so has part: feature:7382-8041:1:exon

WP_020967647.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7382-8041:1:exon

LBPG_RS14370
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14370
old locus tag: LBPG_04112
so part of: sequence
location: 8053..10068
location: region:8053-10068:1
so has part: feature:8053-10068:1:exon
subclass of: SO_0000010

57091520
type: Gene
SIO_000068: ncbigene

position:8053:1
position: 8053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10068:1
position: 10068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8053-10068:1:exon

LBPG_RS14370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14370
old locus tag: LBPG_04112
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003680243.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF87 domain-containing protein
translation: MNFGDKVIDLFMPTKKESQQNSEPAVNKQKPEVEDFTKLIDRDSLHSLFPFSWEQYPTYVQSGENFIRVLAIADYPKRVYGNWLSELKRKKGVIDIVQYIDSASNNSMITYYKKTIQNKEAQKLNTFDPYKKKILQNYIDSANMQLDKYLDNSTTFVYQHMLIYLRANSLAELDDLTENVKNTLIKLQMKPLVPVKATFQAFWSTMPINENLMSDYTYKESNTEVASSMFPFDDAEILDLKPRSDIEGVNKDTNSLIAVDMLDRNKTLNQNQVIIGTSGVGKTTYMIQKILRYAIQDYQIYIIDPENEYTKIVEALGGAVLHLTSNAKYKINPLQIFSEEILSADEAVTNLDLLVKDKIQRLKGFFEVLKTGITQVELAILDDVVKQAYVNSGVLKYSRLKEIKDDQWPTLSNVYDELEKLADKDADKFNRVKDFYYILGSYTHGSNSLFDGHTNVNLKGKIISFDLKPLQSEQEVQSAAYLNTFQYLWDEITKDRHSRKKLFVDEFHFLTLHKAAATFFHQAYKRFRKYNAGAIAGTQQIQDVIEGTTDTGQNIGEAIIGNSYTKVFFGLDGKGVDDVITKLRMTFSDKEKKLLERRRQGEALMIYGSQRAFMKVELTEEELRLIDPEAYQNKYDRDTPEQPNYQKRVVLTPSEIDTLTTTEEKGGTLNE
SIO_010081: LBPG_RS14370
subclass of: SO_0000673
so part of: LBPG_RS14370
location: 8053..10068
location: region:8053-10068:1
so has part: feature:8053-10068:1:exon

WP_020967648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8053-10068:1:exon

LBPG_RS14375
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14375
old locus tag: LBPG_04113
so part of: sequence
location: 10061..11479
location: region:10061-11479:1
so has part: feature:10061-11479:1:exon
subclass of: SO_0000010

57091521
type: Gene
SIO_000068: ncbigene

position:10061:1
position: 10061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11479:1
position: 11479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10061-11479:1:exon

LBPG_RS14375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14375
old locus tag: LBPG_04113
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016370339.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type VII secretion protein EssB/YukC
translation: MSKDLELLNIEVGTFKRIKDKLTLELDRSQFRYDNISELNELKKETPNFLQLLNIVEQDERVVLTYALPDRVKSLKSLPHENKAIRSAIAKEIMAQKVVNDSQYHIALNPANLWYYPMQHVWYAYRANELMPYDDKHSNLAKYKALILFCLTGTPYERLLSNPKEALAKHPDDYLQQVAKATSLNELTEVVNGIEDFVSYHEWQAVETAQQKTKQRLWLSVAGVAIVAVLAVGLVHKSDERKYQSLANQNQAQVTRLKYSGQIQTALNDHKWSEAQKDMQRAGYPATKQVNVFLKHGQYQQALKVDPSQLNKVVNTAYANKDSGQVAKWELPTKATSKQKDQLALEKAIVNYDTNTLNNQLSFTTNADVLLRMGQAFLAHNDTQDAQTVQTKLAGVNSPKAKYLKALLSLNAAKNEVSDAQKKLDDANKIDGSKDKDKDKKVDSAKSDLKNAQSDQSAAQKQVDQAKHKVGD
SIO_010081: LBPG_RS14375
subclass of: SO_0000673
so part of: LBPG_RS14375
location: 10061..11479
location: region:10061-11479:1
so has part: feature:10061-11479:1:exon

WP_003660132.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10061-11479:1:exon

LBPG_RS14380
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14380
old locus tag: LBPG_04114
so part of: sequence
location: 11480..12634
location: region:11480-12634:1
so has part: feature:11480-12634:1:exon
subclass of: SO_0000010

57091522
type: Gene
SIO_000068: ncbigene

position:11480:1
position: 11480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12634:1
position: 12634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11480-12634:1:exon

LBPG_RS14380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14380
old locus tag: LBPG_04114
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003680247.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage tail tip lysozyme
translation: MQVLSFEYKKKKWKLIAYIVGGAILLIILLIAAVTGQLQENSCDNSTTTETQLDSKSMTENAKNIYAHWKQKYGATPQAAAGILGVLQLESRLDPKSVNSSSGATGLAQWLGGRKDKLEDLAHKENKSATNLGVQLDYLDQELNSSYYASNKQIFKYTDVHKATKSWLMDYEGMSKNPEQWYLSQRYGYADHWYSVLGASDPVAGNTLDNASSGDLTELGCDSDPSYSGGSIVKNAESMKGDFYYVQTHPSPDLGSDLKNPSKTGGTDCSGFVWLALNKAGYKVPANMGWFTGTMASDAKGSHQYLKQISENDAKAGDIVIVNQGAGAGNNGHTAILLGKWQGKATKIIEQGGVGDKVNESTFGTAFYSLLSGSDVTLARPIKK
SIO_010081: LBPG_RS14380
subclass of: SO_0000673
so part of: LBPG_RS14380
location: 11480..12634
location: region:11480-12634:1
so has part: feature:11480-12634:1:exon

WP_003660135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11480-12634:1:exon

LBPG_RS14385
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14385
old locus tag: LBPG_04115
so part of: sequence
location: 12648..13265
location: region:12648-13265:1
so has part: feature:12648-13265:1:exon
subclass of: SO_0000010

57091523
type: Gene
SIO_000068: ncbigene

position:12648:1
position: 12648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13265:1
position: 13265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12648-13265:1:exon

LBPG_RS14385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14385
old locus tag: LBPG_04115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012552815.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRSMVLSIAIGSLILIMSLGANAYQHSQVKQAQQQISRLQQQKRQVNRQLTKANQQKQLLSTQIDSYKTYQNNKDKSQAELSFNTVVTKFFDVMNNFKPKTYGQRKDGVKDLISDKLYQQYFSNKGTYGDSNSVSAKLDQLNLYTQSKQGQNMKGLAVVSYESKSGDNDWQKATVLYQVTFDTTTNRITAVQNLGSSFKASDLN
SIO_010081: LBPG_RS14385
subclass of: SO_0000673
so part of: LBPG_RS14385
location: 12648..13265
location: region:12648-13265:1
so has part: feature:12648-13265:1:exon

WP_003660138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12648-13265:1:exon

LBPG_RS14390
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14390
old locus tag: LBPG_04116
so part of: sequence
location: 13252..13620
location: region:13252-13620:1
so has part: feature:13252-13620:1:exon
subclass of: SO_0000010

57091524
type: Gene
SIO_000068: ncbigene

position:13252:1
position: 13252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13620:1
position: 13620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13252-13620:1:exon

LBPG_RS14390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14390
old locus tag: LBPG_04116
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012552816.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTLIKRVGKALAVIVVVLAVGGFTGHQYVNHVEKQRPVVTLAKHPKKVLFFYRDDCPDCQAIFHRIYWHNVISHNIILINMNQPKNRHYIQQYQLTSVPTLIHGKQRYAGTKQSQIKRIVGD
SIO_010081: LBPG_RS14390
subclass of: SO_0000673
so part of: LBPG_RS14390
location: 13252..13620
location: region:13252-13620:1
so has part: feature:13252-13620:1:exon

WP_003660139.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13252-13620:1:exon

LBPG_RS14395
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14395
old locus tag: LBPG_04117
so part of: sequence
location: 13623..14108
location: region:13623-14108:1
so has part: feature:13623-14108:1:exon
subclass of: SO_0000010

57091525
type: Gene
SIO_000068: ncbigene

position:13623:1
position: 13623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14108:1
position: 14108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13623-14108:1:exon

LBPG_RS14395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14395
old locus tag: LBPG_04117
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003590784.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDRSIAVIKASWPYVLTLIIGLYLAEILAGAVMALSRYKLTFADHMPTVLKQLALHPWHYYNLYLGQKNPVLIIVSVAVVLYTIYFALKRNSKHKAWETADTETHGSATWGDLKELSDHYFSISPKDLTTSFNTMTDLEAVKMLIDKSQSETKPEKENLK
SIO_010081: LBPG_RS14395
subclass of: SO_0000673
so part of: LBPG_RS14395
location: 13623..14108
location: region:13623-14108:1
so has part: feature:13623-14108:1:exon

WP_003660141.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13623-14108:1:exon

LBPG_RS14400
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14400
old locus tag: LBPG_04118
so part of: sequence
location: 14105..14494
location: region:14105-14494:1
so has part: feature:14105-14494:1:exon
subclass of: SO_0000010

57091526
type: Gene
SIO_000068: ncbigene

position:14105:1
position: 14105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14494:1
position: 14494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14105-14494:1:exon

LBPG_RS14400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14400
old locus tag: LBPG_04118
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKENYVTKNSYTRAEADLLIAISEWVSAIGQLPESKALALDDLAAIQAKQVLQQPLPGQLSFPTHTPSGYLSGLKYLVDVYLDLSKHLPPAHAINNDLNNVETKYVQVELANALKAKLDEDYQLADKA
SIO_010081: LBPG_RS14400
subclass of: SO_0000673
so part of: LBPG_RS14400
location: 14105..14494
location: region:14105-14494:1
so has part: feature:14105-14494:1:exon

WP_003660144.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14105-14494:1:exon

LBPG_RS14405
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14405
old locus tag: LBPG_04119
so part of: sequence
location: 14510..16051
location: region:14510-16051:1
so has part: feature:14510-16051:1:exon
subclass of: SO_0000010

57091527
type: Gene
SIO_000068: ncbigene

position:14510:1
position: 14510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16051:1
position: 16051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14510-16051:1:exon

LBPG_RS14405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14405
old locus tag: LBPG_04119
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003712736.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MNGTILGIVDKRIVYQNNSTKPNRNIFVVGGPGSYKTQSVVITNLFNETENSIVVTDPKGELYEKTAGIKLAQGYQVHVVNFANMAHSDRYNPFDYIQRDIQAETVATKIVQSENAEGKKDVWFSTQRQLLKALILFVMNHRPPEQQNLAGVTQVLQENDVEAEEKGADSPLDTLFLDLTMSDPARRAYELGFKKAKGEMKASIIESLLATISKFVDKEVANFTSFSDFDLKEIGKAKVVLYVIIPVMDNTYESFINLFFSQLFDELYKLAADHHAKLPHQVDFILDEFVNLGKFPKYEEFLATCRGYGIGVTTICQTLTQLQALYGKDKAESILGNHAVKICLNAANDVTAKYFSDLLGKSTVKVETGSESTSHSKEESHSKSDSYSYTSRSLMTPDEIMRMPEDQSLLIFSNARPVKATKAFQFKLFPGADHLVNLSQNEYQGQPEASQETNFHQKVAKWKAKLKETDQKKAANKMSQTEEEQQQDSLDSDLERVSNKDSQTEEPDDNLFG
SIO_010081: LBPG_RS14405
subclass of: SO_0000673
so part of: LBPG_RS14405
location: 14510..16051
location: region:14510-16051:1
so has part: feature:14510-16051:1:exon

WP_003660146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14510-16051:1:exon

LBPG_RS14410
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14410
old locus tag: LBPG_04120
so part of: sequence
location: 16066..16455
location: region:16066-16455:1
so has part: feature:16066-16455:1:exon
subclass of: SO_0000010

57091528
type: Gene
SIO_000068: ncbigene

position:16066:1
position: 16066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16455:1
position: 16455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16066-16455:1:exon

LBPG_RS14410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14410
old locus tag: LBPG_04120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003660147.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKYRKYIIAVMTVLLIAVGLTACGKSTAQDLQSHQWTFASSKDNGMAATAKFSKSNLTLTQAGFSEVYEYKLLESKGNEQIKFIGKNSVSGSTETRLFKIKKQSDKYKLTPINTLAKSDTGTVSLIPK
SIO_010081: LBPG_RS14410
subclass of: SO_0000673
so part of: LBPG_RS14410
location: 16066..16455
location: region:16066-16455:1
so has part: feature:16066-16455:1:exon

WP_003660147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16066-16455:1:exon

LBPG_RS14415
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14415
old locus tag: LBPG_04121
so part of: sequence
location: 16474..17313
location: region:16474-17313:1
so has part: feature:16474-17313:1:exon
subclass of: SO_0000010

57091529
type: Gene
SIO_000068: ncbigene

position:16474:1
position: 16474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17313:1
position: 17313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16474-17313:1:exon

LBPG_RS14415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14415
old locus tag: LBPG_04121
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012552820.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNIIQSAISHFFEWLLSGLLDGLFNICKAIIDQANQSLPIVKTWYAIFLSFATSLVVVVVLGRIVMTILKEADESTDVTWANIIMDGIKSAAVIPVFVFLQGFIQGSITLPLLKYMFSSDQKFTAKSISGMNKVPGLKDVGVSLPLQILFLLIFTVVTVVFFIKMCVFVADMAWYNLTIPLAAMSMATESFDYSNTWWKKYIYYNASIISQVLCMSLSVWCFTNMAKYGFIAFIASIGFGFLVVKTPDAVKDFWASTGVTKSTGMGAMRMFQNYFRNH
SIO_010081: LBPG_RS14415
subclass of: SO_0000673
so part of: LBPG_RS14415
location: 16474..17313
location: region:16474-17313:1
so has part: feature:16474-17313:1:exon

WP_003660150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16474-17313:1:exon

LBPG_RS14420
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14420
old locus tag: LBPG_04122
so part of: sequence
location: 17328..17738
location: region:17328-17738:1
so has part: feature:17328-17738:1:exon
subclass of: SO_0000010

57091530
type: Gene
SIO_000068: ncbigene

position:17328:1
position: 17328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17738:1
position: 17738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17328-17738:1:exon

LBPG_RS14420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14420
old locus tag: LBPG_04122
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002825296.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIAHWLLEKAKKDMRTDPFTTPSRRTKLSYYFDNLVSMVFYIMGIYLMLMDLYQELFTANHTDFLGTALMALVLLLGGLLFRWSAYADLKAINRYQHYLKQQSIEQQQELRRETWLKAAKQGKTELDQKLNHKE
SIO_010081: LBPG_RS14420
subclass of: SO_0000673
so part of: LBPG_RS14420
location: 17328..17738
location: region:17328-17738:1
so has part: feature:17328-17738:1:exon

WP_003660151.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17328-17738:1:exon

LBPG_RS14425
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
gene: topB
locus tag: LBPG_RS14425
old locus tag: LBPG_04123
so part of: sequence
location: 17745..19880
location: region:17745-19880:1
so has part: feature:17745-19880:1:exon
subclass of: SO_0000010

57091531
type: Gene
SIO_000068: ncbigene

position:17745:1
position: 17745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19880:1
position: 19880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17745-19880:1:exon

LBPG_RS14425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
gene: topB
locus tag: LBPG_RS14425
old locus tag: LBPG_04123
EC number: 5.6.2.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002825295.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IA DNA topoisomerase
translation: MTTVILAEKPSQGRSYVQAFQKSTKKQGYYEVSDPVLPENTLVTYGLGHLVELATPDKYDQKYQQWALSNLPIFPDKYKFVVSASKKDQFKVVKDLLTKADTIIVATDSGREGSNIAWSIMNQAQIDVKKKTIKRLWLNSLEKDAIITGFKNLGDWHKDYLAYKEAQTRQISDWLIGMNGSPLYTLLLRQKGVRGVYSIGRVQTPTLYMVYQRDQAIKNFKPEPYFELNAEILANQQKFVAKLDPYQRFKDETRLMTFMQAKHVQKGSQGGLIKDVQKQAKKSASPQLFSLSSLQSAMNKRYHASASQTLAAIQSLYEAKLLSYPRTDCAYITDEEFDYLLANLTKYLGLVSKPVALTNTTPNKRYVNGKKVEEHYAIIMTKVVPTKEKLASLPKLQQQVYDLVLRTTLAMFADPYEYEETTIITQVGDANFKATGKVPTKQGWQALFDDHQADQQETATLPLVHQGDQVQANLQTPQKETTPPVPFTEGTLITAMKTAGKTLDDEEAQAILKDVQGIGTSATRANVLEVLKKRGYLVTEKNKLHVSEAGITLCKAVELEPLLTSPEMTAKWEQALQQISTEERTPDNFLSQIKKFVEKLIADVPTQLTGSAAIKQQIDHQQQAQKAAEVFLETPQATVLNKQKFYIVKPKQGEDFTLPKKWSSKTLGKTAIKALVTKGETSKLKGFKSKKGKSFDAKLKLDGHKLSFDFD
SIO_010081: LBPG_RS14425
subclass of: SO_0000673
so part of: LBPG_RS14425
location: 17745..19880
location: region:17745-19880:1
so has part: feature:17745-19880:1:exon

WP_003660153.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17745-19880:1:exon

LBPG_RS14430
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14430
old locus tag: LBPG_04124
so part of: sequence
location: 20001..20216
location: region:20001-20216:1
so has part: feature:20001-20216:1:exon
subclass of: SO_0000010

57091532
type: Gene
SIO_000068: ncbigene

position:20001:1
position: 20001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20216:1
position: 20216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20001-20216:1:exon

LBPG_RS14430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14430
old locus tag: LBPG_04124
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003660156.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNELEALASELPILTDKSSYKYLSEVAGNGKYIQVAWQKKNAEYLALYGTQSIKLPQIDNSVEFVDAEEV
SIO_010081: LBPG_RS14430
subclass of: SO_0000673
so part of: LBPG_RS14430
location: 20001..20216
location: region:20001-20216:1
so has part: feature:20001-20216:1:exon

WP_003660156.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20001-20216:1:exon

LBPG_RS16425
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS16425
pseudo: true
so part of: sequence
location: 20219..>21094
location: region:20219-21094:1
so has part: feature:20219-21094:1:exon
subclass of: SO_0000010

77229884
type: Gene
SIO_000068: ncbigene

position:20219:1
position: 20219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21094:1
position: 21094
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20219-21094:1:exon

LBPG_RS16425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS16425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002819865.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ImmA/IrrE family metallo-endopeptidase
SIO_010081: LBPG_RS16425
subclass of: SO_0000673
so part of: LBPG_RS16425
location: 20219..>21094
location: region:20219-21094:1
so has part: feature:20219-21094:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20219-21094:1:exon

LBPG_RS14440
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14440
old locus tag: LBPG_04126
so part of: sequence
location: 21754..22341
location: region:21754-22341:1
so has part: feature:21754-22341:1:exon
subclass of: SO_0000010

57091534
type: Gene
SIO_000068: ncbigene

position:21754:1
position: 21754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22341:1
position: 22341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21754-22341:1:exon

LBPG_RS14440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14440
old locus tag: LBPG_04126
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003680034.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAKIGYARVSSKEQHLDRQLAALKAVDKLFTDKLSGANTNRPELQKMLAYIREGDIVMVTELDRLGRNNHDLTKIMNSIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKQQGKYHGRKPQYTKDDPRLLHAFKLYQAGMSDVDVARNTGIKRTTFIRYRKKYKIKRK
SIO_010081: LBPG_RS14440
subclass of: SO_0000673
so part of: LBPG_RS14440
location: 21754..22341
location: region:21754-22341:1
so has part: feature:21754-22341:1:exon

WP_003660160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21754-22341:1:exon

LBPG_RS14445
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14445
old locus tag: LBPG_04127
so part of: sequence
location: 22473..23522
location: region:22473-23522:1
so has part: feature:22473-23522:1:exon
subclass of: SO_0000010

57091535
type: Gene
SIO_000068: ncbigene

position:22473:1
position: 22473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23522:1
position: 23522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22473-23522:1:exon

LBPG_RS14445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14445
old locus tag: LBPG_04127
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010623258.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParM/StbA family protein
translation: MDIFSLDLGNKQTKLKSSKAEYVLPSRYLNQADMPMSVGNSTMNNDLHTYSVPFSDDKYVWGRDIDGLHLDEYLADTIMYGARYDSEAFKLLANFALGLLASDFKAAKDQVLEVVVTAGLPTGDYADQGQLKALLKVLEGQHQVTIDDKIVTVRVRKVYILPQPIGTLYNELLDDEGFIQNKDLLDEKVGIVDVGGGTILIDTILNFELSGKNRHQFNTGVNDLYEAIANGINGDTSLYQLEKDLRKGNQQHHWSYRFSKNRQDDITDLVCKEIDRFTRRLVANVTSTLKNLDSIDTLFFTGGGANLLNQKILNTTFTNAVIVKNTEVANVNGFYKYGLSQQAQNEGSK
SIO_010081: LBPG_RS14445
subclass of: SO_0000673
so part of: LBPG_RS14445
location: 22473..23522
location: region:22473-23522:1
so has part: feature:22473-23522:1:exon

WP_003660162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22473-23522:1:exon

LBPG_RS14450
type: Gene
subclass of: SO_0000704
RO_0002162: 537973
locus tag: LBPG_RS14450
old locus tag: LBPG_04128
so part of: sequence
location: 23525..23800
location: region:23525-23800:1
so has part: feature:23525-23800:1:exon
subclass of: SO_0000010

57091536
type: Gene
SIO_000068: ncbigene

position:23525:1
position: 23525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23800:1
position: 23800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23525-23800:1:exon

LBPG_RS14450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 537973
locus tag: LBPG_RS14450
old locus tag: LBPG_04128
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008212490.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGKVKTLNVRLNPEKIVDKEILDYFDKSLIPKTTLVKTALIHEIERLKAQGDPYVKDELKAPEAPKNSTESPSDSKERLQGGFNAFSDDDI
SIO_010081: LBPG_RS14450
subclass of: SO_0000673
so part of: LBPG_RS14450
location: 23525..23800
location: region:23525-23800:1
so has part: feature:23525-23800:1:exon

WP_003660163.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23525-23800:1:exon