Clostridium carboxidivorans P7 plasmid unnamed, complete sequence.
type: Entry
definition: Clostridium carboxidivorans P7 plasmid unnamed, complete sequence.
sequence version: NZ_CP011804.1
sequence date: 2023-04-13
sequence: sequence
division: CON
label: NZ_CP011804.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03740584
keyword: RefSeq
source: Clostridium carboxidivorans P7
organism: Clostridium carboxidivorans P7
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP011804.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.5.0\nGenome Coverage :: 141\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/13/2023 02:06:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,285\nCDSs (total) :: 5,171\nGenes (coding) :: 5,135\nCDSs (with protein) :: 5,135\nGenes (RNA) :: 114\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 8\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 9 of 36\nPseudo Genes (incomplete) :: 25 of 36\nPseudo Genes (internal stop) :: 10 of 36\nPseudo Genes (multiple problems) :: 8 of 36\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19902
topology: circular
so has quality: SO_0000988
location: 1..19902
location: region:1-19902:1
RO_0002162: 536227

NZ_CP011804
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03740584
type: BioSample
SIO_000068: biosample

1
title: The complete genome sequence of Clostriidum carboxidivorans P7 which can use CO/CO2 as a solo carbon resource producing butanol and hexanol
author: Li, N.
author: Yang, J.
author: Chai, C.
author: Yang, S.
author: Jiang, W.
author: Gu, Y.
journal: Unpublished

2
title: Direct Submission
author: Li, N.
author: Yang, J.
author: Chai, C.
author: Yang, S.
author: Jiang, W.
author: Gu, Y.
journal: Submitted (09-JUN-2015) Shanghai Institute of Plant Physiology and Ecology (SIPPE), The Shanghai Institutes for Biological Sciences of the Chinese Academy of Sciences, 300 Feng Lin Road, Shanghai, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19902:1
position: 19902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19902:1:source
so part of: sequence
organism: Clostridium carboxidivorans P7
mol type: genomic DNA
strain: P7
isolation source: agricultural settling lagoon
type material: type strain of Clostridium carboxidivorans
plasmid: unnamed

536227
type: Taxonomy
SIO_000068: taxonomy

Ccar_RS25850
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25850
old locus tag: Ccar_25855
so part of: sequence
location: complement(898..1212)
location: region:898-1212:-1
so has part: feature:898-1212:-1:exon
subclass of: SO_0000010

position:898:-1
position: 898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1212:-1
position: 1212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:898-1212:-1:exon

Ccar_RS25850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25850
old locus tag: Ccar_25855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063242.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMNNNLKKVINGAMELAYQNSVENDGYRLDQNEELKKADDKISDLLNEIKMILPEEKRNLITELEDAETNLICMTMRNGFKLGVVSGFTQLEFLKEYGVRLLYL
SIO_010081: Ccar_RS25850
subclass of: SO_0000673
so part of: Ccar_RS25850
location: complement(898..1212)
location: region:898-1212:-1
so has part: feature:898-1212:-1:exon

WP_007063242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:898-1212:-1:exon

Ccar_RS25855
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25855
old locus tag: Ccar_25860
so part of: sequence
location: complement(1292..1564)
location: region:1292-1564:-1
so has part: feature:1292-1564:-1:exon
subclass of: SO_0000010

position:1292:-1
position: 1292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1564:-1
position: 1564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1292-1564:-1:exon

Ccar_RS25855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25855
old locus tag: Ccar_25860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063243.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKQFLNPKEFAIETGLTYQNVLHLCKTKEIESKTTVNGRRFLIPNSELLKFQGGNINYISIEKYEEILRENQRLELILEQIKTLVKEIV
SIO_010081: Ccar_RS25855
subclass of: SO_0000673
so part of: Ccar_RS25855
location: complement(1292..1564)
location: region:1292-1564:-1
so has part: feature:1292-1564:-1:exon

WP_007063243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1292-1564:-1:exon

Ccar_RS25860
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25860
old locus tag: Ccar_25865
so part of: sequence
location: 1784..1945
location: region:1784-1945:1
so has part: feature:1784-1945:1:exon
subclass of: SO_0000010

position:1784:1
position: 1784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1945:1
position: 1945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1784-1945:1:exon

Ccar_RS25860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25860
old locus tag: Ccar_25865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063244.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MIKKDNIRIAITLPKTLHEQLKNEAEYQNRTVSNLTVTILQKYMEALNKKREK
SIO_010081: Ccar_RS25860
subclass of: SO_0000673
so part of: Ccar_RS25860
location: 1784..1945
location: region:1784-1945:1
so has part: feature:1784-1945:1:exon

WP_007063244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1784-1945:1:exon

Ccar_RS25865
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25865
old locus tag: Ccar_25870
so part of: sequence
location: 2375..2617
location: region:2375-2617:1
so has part: feature:2375-2617:1:exon
subclass of: SO_0000010

position:2375:1
position: 2375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2617:1
position: 2617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2375-2617:1:exon

Ccar_RS25865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25865
old locus tag: Ccar_25870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063245.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSVSSKIKALLKLKGKGNEELANHLDISKQSLSNKFYRDSFSTQDLIKISTFLGYTLAFVIDESQMIILDKSDLKGEGAK
SIO_010081: Ccar_RS25865
subclass of: SO_0000673
so part of: Ccar_RS25865
location: 2375..2617
location: region:2375-2617:1
so has part: feature:2375-2617:1:exon

WP_007063245.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2375-2617:1:exon

Ccar_RS25870
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25870
old locus tag: Ccar_25875
so part of: sequence
location: 2745..3071
location: region:2745-3071:1
so has part: feature:2745-3071:1:exon
subclass of: SO_0000010

position:2745:1
position: 2745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3071:1
position: 3071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2745-3071:1:exon

Ccar_RS25870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25870
old locus tag: Ccar_25875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011930384.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDTELKNILVKLLEGQSKLESEVKKNSIKLESIETKLNTIAEIQKAHMDQNEKAHTEVIKPLSEKVDVIELAVKDTSKDMQELKDKFDKVEKVTIQNTYDVAYLKSVK
SIO_010081: Ccar_RS25870
subclass of: SO_0000673
so part of: Ccar_RS25870
location: 2745..3071
location: region:2745-3071:1
so has part: feature:2745-3071:1:exon

WP_007064962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2745-3071:1:exon

Ccar_RS25875
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25875
old locus tag: Ccar_25880
so part of: sequence
location: complement(3083..4066)
location: region:3083-4066:-1
so has part: feature:3083-4066:-1:exon
subclass of: SO_0000010

position:3083:-1
position: 3083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4066:-1
position: 4066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3083-4066:-1:exon

Ccar_RS25875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25875
old locus tag: Ccar_25880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063247.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADEKNNPFSVRMELEEKERLLKLIQESGKNNKEFMSILINAYELNKAKIEIPDIAKDIEGLQALTQRINDYYVNIGKRIEDIQKSKDVEFAKETEMYKSRIETLKNENEKINSYYEDMKQSYNNINLDYEDVKKQLEQLQENLKDKALLVEEYKEKNDTMTGVLNEYKQYKKEIEDYKKIIDENQKLVDKISKESTERAYFLVERDKEIKGLKEDKEKTVQELKEYKERISQELKEDKEKTIQELNTKHKVELEANKEKSEIQRDKAILELRTQHQKEQQDLQHNHNKEIQEYQKKYKELLEELEKVKSSEKESTKTAKRSTKNES
SIO_010081: Ccar_RS25875
subclass of: SO_0000673
so part of: Ccar_RS25875
location: complement(3083..4066)
location: region:3083-4066:-1
so has part: feature:3083-4066:-1:exon

WP_007063247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3083-4066:-1:exon

Ccar_RS25880
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25880
old locus tag: Ccar_25885
so part of: sequence
location: complement(4264..4605)
location: region:4264-4605:-1
so has part: feature:4264-4605:-1:exon
subclass of: SO_0000010

position:4264:-1
position: 4264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4605:-1
position: 4605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4264-4605:-1:exon

Ccar_RS25880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25880
old locus tag: Ccar_25885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007064307.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MATKKNSNEAVNLKGILNTLEETVEETVQSTINDTNSKTNIDTNINIDTSNDTNNKFTLKKKLDDKKEKKAFNVYMNPDLIKELDKISKKSGYSRNELINLMCEYCVKNLELI
SIO_010081: Ccar_RS25880
subclass of: SO_0000673
so part of: Ccar_RS25880
location: complement(4264..4605)
location: region:4264-4605:-1
so has part: feature:4264-4605:-1:exon

WP_007064307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4264-4605:-1:exon

Ccar_RS25885
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25885
old locus tag: Ccar_25890
so part of: sequence
location: complement(4595..5359)
location: region:4595-5359:-1
so has part: feature:4595-5359:-1:exon
subclass of: SO_0000010

position:4595:-1
position: 4595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5359:-1
position: 5359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4595-5359:-1:exon

Ccar_RS25885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25885
old locus tag: Ccar_25890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007064308.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MEIIALTNQKGGVSKTTSCVNIGTILAEQGKKVLLIDLDSQGNLTSILNINTNDNTIRYTIYDCLCNTIGLSDAIVHTEFNVDIVPSDLNLSNADIELLNRNNKECTLKKLIEKSYLDYDYILIDCNPSLNLLTINALVASNSFIIPLEASILSIYGLNQLIKIVKLIQKKLNPGLKNMGVFLAKVDSRSTLSKEFDLQLKEIFGDKLFSTIIHQNTAIVRSQINRKPINFYDRSAKGYKEYLELTKEVMKRGN
SIO_010081: Ccar_RS25885
subclass of: SO_0000673
so part of: Ccar_RS25885
location: complement(4595..5359)
location: region:4595-5359:-1
so has part: feature:4595-5359:-1:exon

WP_007064308.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4595-5359:-1:exon

Ccar_RS25890
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25890
old locus tag: Ccar_25895
so part of: sequence
location: complement(5717..7156)
location: region:5717-7156:-1
so has part: feature:5717-7156:-1:exon
subclass of: SO_0000010

position:5717:-1
position: 5717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7156:-1
position: 7156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5717-7156:-1:exon

Ccar_RS25890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25890
old locus tag: Ccar_25895
inference: COORDINATES: protein motif:HMM:NF022633.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2971 domain-containing protein
translation: MCNYIYRMRSLDALLDGYHELENQEIYFASNDELNDPMEGFRDIFWHGDEIVWKNFLTHYLLCLEHVFSIVLVGGTSIDKSLLNIPVFKGEEDLNTDDYKESFYSMRKAFFSHDLVSKLPKLLAGRNSPIRKKEMVFYLRLIHPLALDSIQSVLLSEGFIKEKVSLPTSFGFGGLGAEKFFDLVNKFNSEVLESKDSLSETVFDLSCNTLMQMQLILEYNHRNEEHNYAKLFIVIKFPEEYLSKIEEMVYPNWYTACFMGDCTNSSSWGKYGYNHTGVCLKFKTKEVNGLNTISLTGVIGCGSNGDIIGNRDYTFEKVNYEDEFVEIDFFKSLGRLSFNKLYSQWYENENNELSSCADWVNDTPIDDWRKQYWENFIKCVTTKTKDWQYENEHRLIINDFFHDYSKKESRKIKYNFDDLEGIIFGIKTPNSDKVKIMEIIEKKCRVSGRKNFNFYQAEYCRKSGQIQPVKLNLLEFENI
SIO_010081: Ccar_RS25890
subclass of: SO_0000673
so part of: Ccar_RS25890
location: complement(5717..7156)
location: region:5717-7156:-1
so has part: feature:5717-7156:-1:exon

WP_007064961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5717-7156:-1:exon

Ccar_RS25895
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25895
old locus tag: Ccar_25900
so part of: sequence
location: complement(7291..7506)
location: region:7291-7506:-1
so has part: feature:7291-7506:-1:exon
subclass of: SO_0000010

position:7291:-1
position: 7291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7506:-1
position: 7506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7291-7506:-1:exon

Ccar_RS25895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25895
old locus tag: Ccar_25900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063228.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDELLTVLGQALEEIKKTKVKNAIKDQKGKKELTFTFLNKPSEKAMKFHAEFMYRMYLEGKILQCDNEEKQ
SIO_010081: Ccar_RS25895
subclass of: SO_0000673
so part of: Ccar_RS25895
location: complement(7291..7506)
location: region:7291-7506:-1
so has part: feature:7291-7506:-1:exon

WP_007063228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7291-7506:-1:exon

Ccar_RS25900
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25900
old locus tag: Ccar_25905
so part of: sequence
location: complement(7830..9101)
location: region:7830-9101:-1
so has part: feature:7830-9101:-1:exon
subclass of: SO_0000010

position:7830:-1
position: 7830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9101:-1
position: 9101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7830-9101:-1:exon

Ccar_RS25900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25900
old locus tag: Ccar_25905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063229.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNFAYCDHLFDSSTDGYIQLMQINEKKIKVYNTKYKALRTVIEEVEGEKDIYISSNTYYKPKRSTSYIRQFRALYIDLDLKKYGKSEAVYIIYDLVNKNKIPTPSMIVDSGRGIHLYWRIKNAPYGAIHTWQELEDYLYNQLKVLGADIQATDSVRVLRLPNTVNSRINEECKVLIINDDIEYSMYDLREEFLNYSSKKAYQLEFEQTKINKQKKQSVISRLFNSYTLHLARVGDIETLCKLRSYNVKGYRNFILHCYAYWKGIYTRDVEELEKEVIEFNNSFRNPLRSSEVNAILRCIPKAISKFVEYEQGLRNGETKRVTKGMSDKGGYWYKNQTLIERLDITLDEQKHMKTIISQEEKYRRNNDKRKASRRNEEGLTQKQLEIKQLMEQVKKLKEQGLNNSEIARALDINRTKVIRLLK
SIO_010081: Ccar_RS25900
subclass of: SO_0000673
so part of: Ccar_RS25900
location: complement(7830..9101)
location: region:7830-9101:-1
so has part: feature:7830-9101:-1:exon

WP_007063229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7830-9101:-1:exon

Ccar_RS25905
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25905
old locus tag: Ccar_25910
so part of: sequence
location: complement(9460..10203)
location: region:9460-10203:-1
so has part: feature:9460-10203:-1:exon
subclass of: SO_0000010

position:9460:-1
position: 9460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10203:-1
position: 10203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9460-10203:-1:exon

Ccar_RS25905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25905
old locus tag: Ccar_25910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063230.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ORF6C domain-containing protein
translation: MNELVPIEFKNKRILTTEQLAEIYEAPIDNIKVNFNNHKNNFEEGKHYFYLEGDDLKEFKRHVNNIYPPLINKFTSSLYLWTERGANRHCKILDTDKAWEQFDNLEENYFNVKEGNQLSPMEILDLQYQALREQGKKINSIEGRVETLSLTMNISAGQAQTIQKLVHKRVKTLCYGDESNAYNNQKLRKKVYQYIWKTLKDYLNVTVYHNILRKDYAIAIRYIETITLQGALLREVQEANSQILINV
SIO_010081: Ccar_RS25905
subclass of: SO_0000673
so part of: Ccar_RS25905
location: complement(9460..10203)
location: region:9460-10203:-1
so has part: feature:9460-10203:-1:exon

WP_007063230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9460-10203:-1:exon

Ccar_RS25910
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25910
old locus tag: Ccar_25915
so part of: sequence
location: complement(10285..11172)
location: region:10285-11172:-1
so has part: feature:10285-11172:-1:exon
subclass of: SO_0000010

position:10285:-1
position: 10285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11172:-1
position: 11172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10285-11172:-1:exon

Ccar_RS25910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25910
old locus tag: Ccar_25915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063231.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MDNIGIKSEEKEIYIKIIKKVPDRYKNIAQEFIIKKIDEGKRTETIKGYFNDLIQFIRYLEIKGVDLFNIDSKEIELFKGKMLRRGLKPKSINRKLTSINQFLKSIDSQVKFRKIKEQSQNFLNDVFTREEIERLIKCCSNIRDKAIISTLWKTGIRVSELLQLKVRDVGKESIDIEGKGGKHRDILISNELNKLLKEYLKVRISVPGNELFTGKRGALKRGAINKIILKYAKLAKIRKEKAHPHSFRHAFCKALADNGVSIDIIADLAGHKSLDTTRIYTRHTKKELIKILDNI
SIO_010081: Ccar_RS25910
subclass of: SO_0000673
so part of: Ccar_RS25910
location: complement(10285..11172)
location: region:10285-11172:-1
so has part: feature:10285-11172:-1:exon

WP_007063231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10285-11172:-1:exon

Ccar_RS25915
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25915
old locus tag: Ccar_25920
so part of: sequence
location: complement(11216..11425)
location: region:11216-11425:-1
so has part: feature:11216-11425:-1:exon
subclass of: SO_0000010

position:11216:-1
position: 11216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11425:-1
position: 11425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11216-11425:-1:exon

Ccar_RS25915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25915
old locus tag: Ccar_25920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063232.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIEIVDAKTIANIFEMSDRSVRRFASKGIFIKHQNGQYDIAGCVKGYIQYIKKQTEIEIRRKLKKEQNL
SIO_010081: Ccar_RS25915
subclass of: SO_0000673
so part of: Ccar_RS25915
location: complement(11216..11425)
location: region:11216-11425:-1
so has part: feature:11216-11425:-1:exon

WP_007063232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11216-11425:-1:exon

Ccar_RS25920
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25920
old locus tag: Ccar_25925
so part of: sequence
location: complement(11610..11846)
location: region:11610-11846:-1
so has part: feature:11610-11846:-1:exon
subclass of: SO_0000010

position:11610:-1
position: 11610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11846:-1
position: 11846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11610-11846:-1:exon

Ccar_RS25920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25920
old locus tag: Ccar_25925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063233.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNNVIDITKQVKAKVNKEQMNKQLFDIAELINAGYIKEIIGILVDNDENYYPIMPYENIKVVDFKKILDEYIDKVPKD
SIO_010081: Ccar_RS25920
subclass of: SO_0000673
so part of: Ccar_RS25920
location: complement(11610..11846)
location: region:11610-11846:-1
so has part: feature:11610-11846:-1:exon

WP_007063233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11610-11846:-1:exon

Ccar_RS25925
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25925
old locus tag: Ccar_25930
so part of: sequence
location: complement(11962..14490)
location: region:11962-14490:-1
so has part: feature:11962-14490:-1:exon
subclass of: SO_0000010

position:11962:-1
position: 11962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14490:-1
position: 14490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11962-14490:-1:exon

Ccar_RS25925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25925
old locus tag: Ccar_25930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063234.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASKMYEIAFQLGAKLQASFGNAFNTASNRIKSLEAESKAANKGFLGLGEGGTKVFKAAAGLIGGIGFAEAAKQSVMLASDLTEVQNVVDTTFGSSSKQINAWSSTALKGFGLSELQAKQFNGTMGALMKSSGITGNSLVKMSENLTGLSGDFASFYNLPIGEAFEKIKSGISGETEPLKSLGINMSEANLQAFALTQGITKPFQKMSQGEQTLLRYNYLMNVSKDVQGDFTKTSNTFANQLRIAKTSLAQTGATIGAKVLPMLNSLLLAFNNGAMGNLGPILDKTFKAAGTAMNFAKQHAELFKASLLGIASSIAVLKTSATISNVFKSFSDGVKDVKTATGLISNLGRSFNTLKTGGGAIRAISQAFGIANPTILIVVASIAAVSAAAYLIYKNWGPISKFFSNVWSNVKSVFNSFWNWLKSFIGTWGPTILAVTVPIIGIPLLIAQHWGQIKPKLSAIWNSLKNSISNAWASIVKTISSVLKTVSTVVSNGWKAITKAITSSALFKVVSAVFKGILAVTIIFVVNQYNRIVTGWTRIFSAVSSVLSRIWQVISRIWNSIYITVSGVVIRVWNYIVSVWNTIYGTVSGIMTRVWSVIVSIWNSVYRSVSNIVTTIWNVIVKIWNAVYTSVSSVLTTIWTFIVTVWNNVYSSISGIVTTIWNTIVNGFNSAASGVTSIFTNMYNSIVNIFSGIWSAIKSIINGGISMLNGFIGGVNNMISKANSIPGVHIGTVGTIPQLATGGYVKHRPGGILANIGEGSEDEIVSPVSKLRSIIDNVFTNQKSTTVNNQEQPNINFTVNVTIQGNASKSDVYEAITMSKYQIEKVIDEYFNKRKRLSFDS
SIO_010081: Ccar_RS25925
subclass of: SO_0000673
so part of: Ccar_RS25925
location: complement(11962..14490)
location: region:11962-14490:-1
so has part: feature:11962-14490:-1:exon

WP_007063234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11962-14490:-1:exon

Ccar_RS27195
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS27195
so part of: sequence
location: complement(14530..14700)
location: region:14530-14700:-1
so has part: feature:14530-14700:-1:exon
subclass of: SO_0000010

position:14530:-1
position: 14530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14700:-1
position: 14700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14530-14700:-1:exon

Ccar_RS27195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS27195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063235.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIKNVKDLRQAYPELIKQIEDEAIRKIKVDQLEEILTPEDAAVINLSRCMNRIRK
SIO_010081: Ccar_RS27195
subclass of: SO_0000673
so part of: Ccar_RS27195
location: complement(14530..14700)
location: region:14530-14700:-1
so has part: feature:14530-14700:-1:exon

WP_007063235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14530-14700:-1:exon

Ccar_RS25930
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25930
old locus tag: Ccar_25935
so part of: sequence
location: complement(14721..15440)
location: region:14721-15440:-1
so has part: feature:14721-15440:-1:exon
subclass of: SO_0000010

position:14721:-1
position: 14721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15440:-1
position: 15440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14721-15440:-1:exon

Ccar_RS25930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25930
old locus tag: Ccar_25935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063236.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFFKTTTEEKVNSLLKESAAREVKIKESIQSIDEQIGDLQNKNSDLMNKYVSLEIEGNTAGLKEIDKSINITRKQIESLKGKKEAYSRLSNEDRFIKKAIPKIIESARNDRKERAKLLNKKINDKDILINQIKQMEQQLRVTENDIQDLHNEKEVQQVKKILQYIETRKIRYGSEECYIGALLDEAGEEYLEQYIKPELRKFNPEILNINSTRMNQAKETKEDIKNEPENLVLDEIKYR
SIO_010081: Ccar_RS25930
subclass of: SO_0000673
so part of: Ccar_RS25930
location: complement(14721..15440)
location: region:14721-15440:-1
so has part: feature:14721-15440:-1:exon

WP_007063236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14721-15440:-1:exon

Ccar_RS25935
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25935
old locus tag: Ccar_25940
so part of: sequence
location: 15825..16535
location: region:15825-16535:1
so has part: feature:15825-16535:1:exon
subclass of: SO_0000010

position:15825:1
position: 15825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16535:1
position: 16535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15825-16535:1:exon

Ccar_RS25935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25935
old locus tag: Ccar_25940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063237.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MDKFGKRLKELREEFDLTQSDLASNLSTKEHVVSTQNISYWENGREPSYDILVKIADRFNVTTDYLTGRCPFRDYSVQMELKNTEIFGSMDAHEKKNAYALIENIFTNLSNFHNQSTQHYKSFYNALNLVNEFYFELLESTLSQDRITEEDYMKELLDNGIIILDDNSQYKLIDPVKLLKNSNTPLNSTSKLRDEIISNLNNSYQDILSFVHIKRLPEYYTIIEKLTSTWKPEKDQ
SIO_010081: Ccar_RS25935
subclass of: SO_0000673
so part of: Ccar_RS25935
location: 15825..16535
location: region:15825-16535:1
so has part: feature:15825-16535:1:exon

WP_007063237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15825-16535:1:exon

Ccar_RS25940
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25940
old locus tag: Ccar_25945
so part of: sequence
location: complement(16604..17440)
location: region:16604-17440:-1
so has part: feature:16604-17440:-1:exon
subclass of: SO_0000010

position:16604:-1
position: 16604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17440:-1
position: 17440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16604-17440:-1:exon

Ccar_RS25940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25940
old locus tag: Ccar_25945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063238.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MLDEFEKYLLQEGKAKNTIKSYMLHVGNYFKWFRDSFGEDPLKLYRQNVLEYKSYLEKIKKENGNTINAKLAALTKFNDFLIYKNIQSESVLSKKDNIKIQMSYASPATITKQDVEVFRQRILQNECNRSYAVVTVLSYAGLRISECLNLKIDDVNLVSKELIVREGKGSKQRIVYINTKIVDAIKEYLKERKKVACEYMFVSNKGNRLDRTVVNKLFNKYSDKITPHTLRHFYCSNALESGFSVHEVANQAGHSNIHTTLLYTNPSKEELKRKTELL
SIO_010081: Ccar_RS25940
subclass of: SO_0000673
so part of: Ccar_RS25940
location: complement(16604..17440)
location: region:16604-17440:-1
so has part: feature:16604-17440:-1:exon

WP_007063238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16604-17440:-1:exon

Ccar_RS25945
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25945
old locus tag: Ccar_25950
so part of: sequence
location: complement(17814..18122)
location: region:17814-18122:-1
so has part: feature:17814-18122:-1:exon
subclass of: SO_0000010

position:17814:-1
position: 17814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18122:-1
position: 18122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17814-18122:-1:exon

Ccar_RS25945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25945
old locus tag: Ccar_25950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002166247.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKSKEMSICDILGRDTSEYKEYVSIDLPKIKISEMLRDAIHSQNLSLRKISKIIDNMNLDDYKASYTQIARVTSGENYNINTLLKILDVLNLEIDIKEKRN
SIO_010081: Ccar_RS25945
subclass of: SO_0000673
so part of: Ccar_RS25945
location: complement(17814..18122)
location: region:17814-18122:-1
so has part: feature:17814-18122:-1:exon

WP_007063239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17814-18122:-1:exon

Ccar_RS25950
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25950
old locus tag: Ccar_25955
so part of: sequence
location: complement(18432..18788)
location: region:18432-18788:-1
so has part: feature:18432-18788:-1:exon
subclass of: SO_0000010

position:18432:-1
position: 18432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18788:-1
position: 18788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18432-18788:-1:exon

Ccar_RS25950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25950
old locus tag: Ccar_25955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MQQLQDLPNLCFTKRALEVLKEDISLTKKARKESFKVLTFLDKFGPNKDFIGSKKLKKFSEGWYELRIRDGSNTWRILFRKIGSCTYGIVHMFLKDTNEISDRDWKIAKQLVRSENWI
SIO_010081: Ccar_RS25950
subclass of: SO_0000673
so part of: Ccar_RS25950
location: complement(18432..18788)
location: region:18432-18788:-1
so has part: feature:18432-18788:-1:exon

WP_007063240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18432-18788:-1:exon

Ccar_RS25955
type: Gene
subclass of: SO_0000704
RO_0002162: 536227
locus tag: Ccar_RS25955
old locus tag: Ccar_25960
so part of: sequence
location: complement(18930..19856)
location: region:18930-19856:-1
so has part: feature:18930-19856:-1:exon
subclass of: SO_0000010

position:18930:-1
position: 18930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19856:-1
position: 19856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18930-19856:-1:exon

Ccar_RS25955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 536227
locus tag: Ccar_RS25955
old locus tag: Ccar_25960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063241.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MGRNLQYQFLNSIDKAFDGGGHDKHTDKHNGKHLDTVYSYAERKGLIELSSQIARFIKESYPDTKKVLDIKEEMIQNFLNSKSETCNKETLGQYGSRIHKLEHIVNDVYKGSASWYNDLIIPTSKVSNDKTRNISMSREDYNSILNRAYNMNSSSKALIAIELAGHFGMRVSETCKFQPRDVSLEAMKLHIHESKGKKNRDIDIRKRDVNFLERIIEGLPQDARIVDIKEDSVNKYLARAEEALGIRDKYQEADTGIHCIRKMVAQERYDEFRKQGLSKKDSLNAVSIYLGHGMDRDETMKQYVLNIH
SIO_010081: Ccar_RS25955
subclass of: SO_0000673
so part of: Ccar_RS25955
location: complement(18930..19856)
location: region:18930-19856:-1
so has part: feature:18930-19856:-1:exon

WP_007063241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18930-19856:-1:exon