Clostridium carboxidivorans P7 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
The complete genome sequence of Clostriidum carboxidivorans P7 which can use CO/CO2 as a solo carbon resource producing butanol and hexanol
Submitted (09-JUN-2015) Shanghai Institute of Plant Physiology and Ecology (SIPPE), The Shanghai Institutes for Biological Sciences of the Chinese Academy of Sciences, 300 Feng Lin Road, Shanghai, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP011804.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.5.0\nGenome Coverage :: 141\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/13/2023 02:06:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,285\nCDSs (total) :: 5,171\nGenes (coding) :: 5,135\nCDSs (with protein) :: 5,135\nGenes (RNA) :: 114\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 8\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 9 of 36\nPseudo Genes (incomplete) :: 25 of 36\nPseudo Genes (internal stop) :: 10 of 36\nPseudo Genes (multiple problems) :: 8 of 36\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Clostridium carboxidivorans
COORDINATES: similar to AA sequence:RefSeq:WP_007063242.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007063243.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063244.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063245.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011930384.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063247.1
COORDINATES: similar to AA sequence:RefSeq:WP_007064307.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007064308.1
COORDINATES: protein motif:HMM:NF022633.2
COORDINATES: similar to AA sequence:RefSeq:WP_007063228.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063230.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063231.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007063232.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063233.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063234.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063235.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063236.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063237.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007063238.1
COORDINATES: similar to AA sequence:RefSeq:WP_002166247.1
COORDINATES: similar to AA sequence:RefSeq:WP_007063240.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007063241.1