Streptomyces rutgersensis strain NBH77 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces diastaticus group.
Antarctic desert soil bacteria exhibit high novel natural product potential, evaluated through long-read genome sequencing and comparative genomics
Submitted (29-OCT-2019) School of Biotechnology and Biomolecular Sciences, University of New South Wales, Botany St, Sydney, NSW 2052, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP045705.1.\nBacteria and source DNA available from Belinda Ferrari, QAP Lab\n4002, Bioscience South E26, UNSW Sydney, Australia 2052 (Quarantine\nregulated isolate).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 07-DEC-2018\nAssembly Method :: FALCON v. v 1.8.6\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 62.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/20/2022 07:42:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,938\nCDSs (total) :: 5,848\nGenes (coding) :: 5,614\nCDSs (with protein) :: 5,614\nGenes (RNA) :: 90\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 234\nCDSs (without protein) :: 234\nPseudo Genes (ambiguous residues) :: 0 of 234\nPseudo Genes (frameshifted) :: 115 of 234\nPseudo Genes (incomplete) :: 170 of 234\nPseudo Genes (internal stop) :: 18 of 234\nPseudo Genes (multiple problems) :: 63 of 234\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008404467.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014677568.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018551950.1
COORDINATES: similar to AA sequence:RefSeq:WP_018551949.1
COORDINATES: similar to AA sequence:RefSeq:WP_019075784.1
COORDINATES: similar to AA sequence:RefSeq:WP_004921061.1
COORDINATES: similar to AA sequence:RefSeq:WP_012998015.1
COORDINATES: similar to AA sequence:RefSeq:WP_019355422.1
COORDINATES: similar to AA sequence:RefSeq:WP_010279001.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636425.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158422.1
COORDINATES: similar to AA sequence:RefSeq:WP_011028484.1
COORDINATES: similar to AA sequence:RefSeq:WP_014182560.1
COORDINATES: similar to AA sequence:RefSeq:WP_018532027.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010636431.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636432.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611868.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020123097.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019227.2
polymorphic toxin-type HINT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010636440.1
COORDINATES: similar to AA sequence:RefSeq:WP_017584321.1
COORDINATES: similar to AA sequence:RefSeq:WP_013227944.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554992.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523012.1
COORDINATES: protein motif:HMM:TIGR00254.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: similar to AA sequence:RefSeq:WP_037846392.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015449470.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636449.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636452.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636453.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522975.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979057.1
COORDINATES: similar to AA sequence:RefSeq:WP_010988922.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645463.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329438.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636459.1
COORDINATES: similar to AA sequence:RefSeq:WP_010985152.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158427.1
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:TIGR01596.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010064753.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
type I-C CRISPR-associated protein Cas5c
COORDINATES: protein motif:HMM:TIGR01863.1
type I-C CRISPR-associated protein Cas8c/Csd1
COORDINATES: similar to AA sequence:RefSeq:WP_018829733.1
type I-C CRISPR-associated protein Cas7/Csd2
COORDINATES: similar to AA sequence:RefSeq:WP_017540925.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010357659.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-C CRISPR-associated endonuclease Cas1c
COORDINATES: similar to AA sequence:RefSeq:WP_010357658.1
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523916.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522413.1
COORDINATES: similar to AA sequence:RefSeq:WP_010639986.1
COORDINATES: similar to AA sequence:RefSeq:WP_020665611.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109680.1
COORDINATES: similar to AA sequence:RefSeq:WP_018539785.1
COORDINATES: protein motif:HMM:NF018154.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003958342.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004994192.1
COORDINATES: similar to AA sequence:RefSeq:WP_003958343.1
COORDINATES: similar to AA sequence:RefSeq:WP_018471758.1
peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007506608.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449524.1
COORDINATES: similar to AA sequence:RefSeq:WP_018808433.1
COORDINATES: similar to AA sequence:RefSeq:WP_018571181.1
COORDINATES: similar to AA sequence:RefSeq:WP_014044707.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014044708.1
TnsA-like heteromeric transposase endonuclease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019329412.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505100.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449532.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015449533.1
COORDINATES: similar to AA sequence:RefSeq:WP_016644112.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039441.1
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_011039444.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636381.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636379.1
COORDINATES: protein motif:HMM:NF019886.2
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_015656956.1
COORDINATES: similar to AA sequence:RefSeq:WP_010639174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043651.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268884.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039465.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636373.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636372.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636371.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636370.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010636369.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636368.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636367.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: protein motif:HMM:NF019428.2
COORDINATES: similar to AA sequence:RefSeq:WP_015385224.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636365.1
pilus assembly protein TadG-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_010636364.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010636363.1
COORDINATES: similar to AA sequence:RefSeq:WP_014140277.1
COORDINATES: similar to AA sequence:RefSeq:WP_010644534.1
COORDINATES: similar to AA sequence:RefSeq:WP_013002097.1
COORDINATES: similar to AA sequence:RefSeq:WP_010982322.1
leucine zipper domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018854280.1
COORDINATES: similar to AA sequence:RefSeq:WP_014044031.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505818.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993653.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606213.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012377534.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006125094.1
COORDINATES: similar to AA sequence:RefSeq:WP_009332786.1
COORDINATES: similar to AA sequence:RefSeq:WP_012948817.1
COORDINATES: similar to AA sequence:RefSeq:WP_015610676.1
COORDINATES: similar to AA sequence:RefSeq:WP_003969235.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268493.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636357.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010636356.1
COORDINATES: similar to AA sequence:RefSeq:WP_018468838.1
LamG-like jellyroll fold domain-containing protein
COORDINATES: protein motif:HMM:NF017411.2
COORDINATES: protein motif:HMM:TIGR03696.1