Pseudomonas ficuserectae strain ZJDX-003 plasmid pZJDX3, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Genome Sequencing of Pseudomonas syringae strain ZJDX-003
Submitted (22-OCT-2021) Department of Sericulture, South china agriculture university, Wushan, Guangzhou, Guangdong 510642, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP085687.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.9\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 366.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/08/2022 13:05:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,850\nCDSs (total) :: 5,766\nGenes (coding) :: 5,442\nCDSs (with protein) :: 5,442\nGenes (RNA) :: 84\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 324\nCDSs (without protein) :: 324\nPseudo Genes (ambiguous residues) :: 0 of 324\nPseudo Genes (frameshifted) :: 124 of 324\nPseudo Genes (incomplete) :: 172 of 324\nPseudo Genes (internal stop) :: 84 of 324\nPseudo Genes (multiple problems) :: 50 of 324\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004667960.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005741149.1
COORDINATES: similar to AA sequence:RefSeq:WP_019331345.1
COORDINATES: similar to AA sequence:RefSeq:WP_003373511.1
COORDINATES: similar to AA sequence:RefSeq:WP_017684686.1
COORDINATES: similar to AA sequence:RefSeq:WP_020312565.1
COORDINATES: similar to AA sequence:RefSeq:WP_002556024.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005746136.1
COORDINATES: similar to AA sequence:RefSeq:WP_020325467.1
PapB/FocB family fimbrial expression transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002556116.1
COORDINATES: similar to AA sequence:RefSeq:WP_010217615.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010217627.1
COORDINATES: similar to AA sequence:RefSeq:WP_005746145.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279381.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477429.1
COORDINATES: similar to AA sequence:RefSeq:WP_013105051.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014028961.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_005734742.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014417.2
transcription termination/antitermination NusG family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004666693.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019331245.1
COORDINATES: similar to AA sequence:RefSeq:WP_007250593.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666658.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666657.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666965.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668141.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668066.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077935.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008077460.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011168770.1
COORDINATES: protein motif:HMM:NF025917.2
protein-tyrosine phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011103324.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005760288.1
putative DNA binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005740914.1
COORDINATES: protein motif:HMM:NF015354.2