Enterococcus mundtii strain DSM 4838 plasmid pLDW-8, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.
The whole genome sequencing and assembly of Enterococcus mundtii DSM 4838 strain
Submitted (16-NOV-2016) Kyungpook National University, School of Applied Biosciences, 80 Daehak-Ro, Bukgu, Daegu 41566, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP018062.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SART analysis 23 v. HGAP protocol 2\nGenome Coverage :: 204.78\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 07:49:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,262\nCDSs (total) :: 3,177\nGenes (coding) :: 3,121\nCDSs (with protein) :: 3,121\nGenes (RNA) :: 85\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 33 of 56\nPseudo Genes (incomplete) :: 24 of 56\nPseudo Genes (internal stop) :: 17 of 56\nPseudo Genes (multiple problems) :: 15 of 56\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011834695.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002364712.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002352952.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002302840.1
COORDINATES: similar to AA sequence:RefSeq:WP_002319846.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002351562.1
COORDINATES: similar to AA sequence:RefSeq:WP_002369673.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002344867.1
COORDINATES: similar to AA sequence:RefSeq:WP_002330586.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002293531.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010750861.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR01716.1
Rgg/GadR/MutR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: similar to AA sequence:RefSeq:WP_002339774.1
COORDINATES: similar to AA sequence:RefSeq:WP_002347218.1
COORDINATES: similar to AA sequence:RefSeq:WP_016922517.1
COORDINATES: similar to AA sequence:RefSeq:WP_002295613.1
COORDINATES: similar to AA sequence:RefSeq:WP_000382611.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015347.2
BspA family leucine-rich repeat surface protein
COORDINATES: similar to AA sequence:RefSeq:WP_006864222.1
COORDINATES: protein motif:HMM:NF025636.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008381812.1
GO:0009986 - cell surface [Evidence IEA]
LPXTG cell wall anchor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019723490.1
COORDINATES: similar to AA sequence:RefSeq:WP_010734520.1
DUF916 and DUF3324 domain-containing protein
COORDINATES: protein motif:HMM:NF025108.2
COORDINATES: similar to AA sequence:RefSeq:WP_016609813.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016609812.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612408.1
COORDINATES: similar to AA sequence:RefSeq:WP_002321860.1
COORDINATES: similar to AA sequence:RefSeq:WP_002372955.1
COORDINATES: similar to AA sequence:RefSeq:WP_015543863.1
COORDINATES: similar to AA sequence:RefSeq:WP_005225252.1
COORDINATES: similar to AA sequence:RefSeq:WP_011673824.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002345951.1
COORDINATES: similar to AA sequence:RefSeq:WP_010736442.1
COORDINATES: similar to AA sequence:RefSeq:WP_010736441.1
COORDINATES: similar to AA sequence:RefSeq:WP_010736440.1
COORDINATES: similar to AA sequence:RefSeq:WP_016613052.1
COORDINATES: similar to AA sequence:RefSeq:WP_016250022.1
COORDINATES: similar to AA sequence:RefSeq:WP_016614778.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00050
FMN riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_010737162.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
COORDINATES: similar to AA sequence:RefSeq:WP_010734603.1
COORDINATES: similar to AA sequence:RefSeq:WP_002331308.1
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
COORDINATES: similar to AA sequence:RefSeq:WP_002315494.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005227582.1
COORDINATES: similar to AA sequence:RefSeq:WP_002287522.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019520.2
COORDINATES: similar to AA sequence:RefSeq:WP_010766851.1
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018380910.1
COORDINATES: similar to AA sequence:RefSeq:WP_006584648.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611166.1
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002300097.1
COORDINATES: similar to AA sequence:RefSeq:WP_005816675.1
COORDINATES: similar to AA sequence:RefSeq:WP_002349331.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015509371.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019380.2
COORDINATES: protein motif:HMM:NF023225.2
COORDINATES: similar to AA sequence:RefSeq:WP_010734521.1
COORDINATES: similar to AA sequence:RefSeq:WP_010736294.1
COORDINATES: similar to AA sequence:RefSeq:WP_016629457.1
COORDINATES: similar to AA sequence:RefSeq:WP_002286278.1
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010736951.1
COORDINATES: similar to AA sequence:RefSeq:WP_003703247.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016613676.1
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002300092.1
COORDINATES: similar to AA sequence:RefSeq:WP_002300091.1
COORDINATES: similar to AA sequence:RefSeq:WP_002300090.1
COORDINATES: similar to AA sequence:RefSeq:WP_000947690.1
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005230920.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005877489.1
COORDINATES: similar to AA sequence:RefSeq:WP_010738555.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010738571.1
COORDINATES: similar to AA sequence:RefSeq:WP_002307568.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_002395901.1
COORDINATES: similar to AA sequence:RefSeq:WP_002311523.1
COORDINATES: similar to AA sequence:RefSeq:WP_002334034.1
isopeptide-forming domain-containing fimbrial protein
COORDINATES: similar to AA sequence:RefSeq:WP_016249929.1
COORDINATES: similar to AA sequence:RefSeq:WP_002325556.1
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_016628759.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002339831.1
COORDINATES: similar to AA sequence:RefSeq:WP_002343435.1
COORDINATES: similar to AA sequence:RefSeq:WP_002302855.1
COORDINATES: similar to AA sequence:RefSeq:WP_002307536.1
COORDINATES: similar to AA sequence:RefSeq:WP_002295649.1
GO:0004040 - amidase activity [Evidence IEA]
glucosaminidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002326164.1
COORDINATES: similar to AA sequence:RefSeq:WP_002295645.1
COORDINATES: similar to AA sequence:RefSeq:WP_002358225.1
COORDINATES: similar to AA sequence:RefSeq:WP_002322839.1
COORDINATES: similar to AA sequence:RefSeq:WP_002299246.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016622811.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
ABC transporter transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein