Enterococcus durans strain BDGP3 plasmid pEdBDGP3A, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.
Complete Genome Sequence of Enterococcus durans Oregon-R-modENCODE strain BDGP3, a lactic acid bacterium found in the Drosophila melanogaster gut
Submitted (15-AUG-2017) BDGP, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP022931.1.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 11-SEP-2015\nAssembly Method :: Celera Assembler v. 2015-09-11\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 04:31:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,816\nCDSs (total) :: 2,725\nGenes (coding) :: 2,683\nCDSs (with protein) :: 2,683\nGenes (RNA) :: 91\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 4\nPseudo Genes (total) :: 42\nCDSs (without protein) :: 42\nPseudo Genes (ambiguous residues) :: 0 of 42\nPseudo Genes (frameshifted) :: 26 of 42\nPseudo Genes (incomplete) :: 16 of 42\nPseudo Genes (internal stop) :: 10 of 42\nPseudo Genes (multiple problems) :: 9 of 42\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Drosophila melanogaster Oregon-R modENCODE
COORDINATES: similar to AA sequence:RefSeq:WP_015081747.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002339159.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: protein motif:HMM:NF020567.2
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002830882.1
COORDINATES: similar to AA sequence:RefSeq:WP_016632525.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system prevent-host-death family antitoxin