Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Prauserella.
Complete genome sequence of Prauserella marina DSM 45268, isolated from ocean sediment of the South China Sea
Submitted (06-JUL-2016) CeBiTec, Bielefeld University, Sequenz 1, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP016354.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nGenome Coverage :: 33.7x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/04/2023 03:43:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,590\nCDSs (total) :: 6,531\nGenes (coding) :: 6,478\nCDSs (with protein) :: 6,478\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 53\nCDSs (without protein) :: 53\nPseudo Genes (ambiguous residues) :: 0 of 53\nPseudo Genes (frameshifted) :: 19 of 53\nPseudo Genes (incomplete) :: 40 of 53\nPseudo Genes (internal stop) :: 2 of 53\nPseudo Genes (multiple problems) :: 7 of 53\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011210397.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014981764.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024913.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:NF041638.1
GO:0008270 - zinc ion binding [Evidence IEA]
RRQRL motif-containing zinc-binding protein
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016070.2
COORDINATES: protein motif:HMM:NF040183.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017577211.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033521.1
lasso RiPP family leader peptide-containing protein
COORDINATES: protein motif:HMM:NF012936.2
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017239.2
PqqD family peptide modification chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_018090021.1
COORDINATES: protein motif:HMM:NF013315.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF014643.2
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: similar to AA sequence:RefSeq:WP_020502349.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020640101.1
COORDINATES: similar to AA sequence:RefSeq:WP_018832112.1
COORDINATES: similar to AA sequence:RefSeq:WP_009086587.1
COORDINATES: protein motif:HMM:NF016550.2
COORDINATES: similar to AA sequence:RefSeq:WP_006240101.1
Scr1 family TA system antitoxin-like transcriptional regulator
COORDINATES: protein motif:HMM:NF014941.2
COORDINATES: similar to AA sequence:RefSeq:WP_007027000.1
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: similar to AA sequence:RefSeq:WP_020461055.1
COORDINATES: similar to AA sequence:RefSeq:WP_009152136.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_005444396.1
COORDINATES: similar to AA sequence:RefSeq:WP_006238938.1
COORDINATES: similar to AA sequence:RefSeq:WP_013678687.1
COORDINATES: protein motif:HMM:NF013335.2
COORDINATES: similar to AA sequence:RefSeq:WP_015786972.1
COORDINATES: similar to AA sequence:RefSeq:WP_009152710.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: protein motif:HMM:NF020952.2
COORDINATES: similar to AA sequence:RefSeq:WP_003941063.1
COORDINATES: protein motif:HMM:NF039700.1
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: similar to AA sequence:RefSeq:WP_020659771.1
COORDINATES: similar to AA sequence:RefSeq:WP_009086589.1
COORDINATES: similar to AA sequence:RefSeq:WP_014144101.1
COORDINATES: protein motif:HMM:NF024911.2
COORDINATES: protein motif:HMM:NF012610.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024784.2
COORDINATES: similar to AA sequence:RefSeq:WP_020388915.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009157232.1
COORDINATES: similar to AA sequence:RefSeq:WP_010243684.1
COORDINATES: similar to AA sequence:RefSeq:WP_017975764.1
COORDINATES: similar to AA sequence:RefSeq:WP_014985649.1
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF025001.2